#!/bin/bash if [ $# -lt 3 ] then echo "Usage : $0 detector_name start_pulse_id end_pulse_id " echo "Example : $0 JF07T32V01 11709404000 11709405000 " echo "Optional parameters: output_file_name rate_multiplicator jf_conversion run_file raw_file" exit fi DETECTOR=$1 START_PULSE_ID=$2 STOP_PULSE_ID=$3 PULSE_ID_STEP=1 # by default assume 100Hz JF_CONVERSION=0 # by default don't call ju_export RUN_FILE=None RAW_FILE=None echo "Request to retrieve : $@ " echo "Started : "`date` date1=$(date +%s) if [ $# -ge 4 ] then OUTFILE=$4 else OUTFILE=/gpfs/photonics/swissfel/buffer/test.${START_PULSE_ID}-${STOP_PULSE_ID}.h5 fi if [ $# -ge 5 ] then PULSE_ID_STEP=$5 fi if [ $# -ge 6 ] then JF_CONVERSION=$6 if [ $# -ge 7 ] then RUN_FILE=$7 fi if [ $# -eq 8 ] then RAW_FILE=$8 fi fi case ${DETECTOR} in 'JF01T03V01') NM=3 DET_CONFIG_FILE=/gpfs/photonics/swissfel/buffer/config/stream-JF01.json ;; 'JF02T09V02') NM=9 DET_CONFIG_FILE=/gpfs/photonics/swissfel/buffer/config/stream-JF02.json ;; 'JF06T32V02') NM=32 DET_CONFIG_FILE=/gpfs/photonics/swissfel/buffer/config/stream-JF06.json ;; 'JF06T08V02') NM=8 DET_CONFIG_FILE=/gpfs/photonics/swissfel/buffer/config/stream-JF06_4M.json ;; 'JF07T32V01') NM=32 DET_CONFIG_FILE=/gpfs/photonics/swissfel/buffer/config/stream-JF07.json ;; 'JF13T01V01') NM=1 DET_CONFIG_FILE=/gpfs/photonics/swissfel/buffer/config/stream-JF13.json ;; *) NM=1 esac #coreAssociated="7,8,9,10,11,12,13,14" coreAssociated="9,10,11,12,13,14,15,16,17" touch /tmp/detector_retrieve.log cd /gpfs/photonics/swissfel/buffer/ PREVIOUS_STILL_RUN=0 while [ ${PREVIOUS_STILL_RUN} == 0 ] do sleep 15 # we need to sleep at least to make sure that we don't read from CURRENT file # ps -fe | grep "bin/sf_writer " | grep -v grep | grep sf_writer > /dev/null # PREVIOUS_STILL_RUN=$? # not found == 1 # PREVIOUS_STILL_RUN=1 n=`ps -fe | grep "bin/sf_writer " | grep -v grep | grep sf_writer | wc -l` if [ ${n} -lt 9 ] then PREVIOUS_STILL_RUN=1 fi done date2=$(date +%s) echo -n "Waited Time : " echo $((date2-date1)) | awk '{print int($1/60)":"int($1%60)}' echo "Started actual retrieve : "`date` if [ ${JF_CONVERSION} == 0 ] then OUTFILE_RAW=${OUTFILE} else if [ ${RAW_FILE} != "None" ] then OUTFILE_RAW=${RAW_FILE} D1=`dirname ${OUTFILE_RAW}` mkdir -p ${D1} else RUN_NUMBER=`basename ${RUN_FILE} | awk -F '.' '{print $1}'` D1=`dirname ${RUN_FILE}` D2=`dirname ${D1}` OUTFILE_RAW=${D2}/.raw/${RUN_NUMBER}.${DETECTOR}.h5 mkdir -p ${D2}/.raw/ fi fi taskset -c ${coreAssociated} /usr/bin/sf_writer ${OUTFILE_RAW} /gpfs/photonics/swissfel/buffer/${DETECTOR} ${NM} ${START_PULSE_ID} ${STOP_PULSE_ID} ${PULSE_ID_STEP}>> /tmp/detector_retrieve.log & wait #coreAssociatedConversion="35,34,33,32,31,30,29,28,27" coreAssociatedConversion="35,34,33,32,31,30,29,28,27,26,25,24,23,22,21,20,19,18" #TODO: calculate this number from coreAssociatedConversion #export NUMBA_NUM_THREADS=18 date3=$(date +%s) echo "Finished : "`date` echo -n "Retrieve Time : " echo $((date3-date2)) | awk '{print int($1/60)":"int($1%60)}' if [ ${JF_CONVERSION} == 0 ] then echo "File is written in raw format, no compression" else echo "Will call compression/convertion ${OUTFILE_RAW} --> ${OUTFILE}" PREVIOUS_STILL_RUN=0 while [ ${PREVIOUS_STILL_RUN} == 0 ] do sleep 15 # we need to sleep at least to make sure that we don't read from CURRENT file n=`ps -fe | grep "scripts/export_file.py " | grep -v grep | grep export | wc -l` if [ ${n} -lt 18 ] then PREVIOUS_STILL_RUN=1 fi done date4=$(date +%s) echo -n "Sleep Time : " echo $((date4-date3)) | awk '{print int($1/60)":"int($1%60)}' export PATH=/home/dbe/miniconda3/bin:$PATH source deactivate >/dev/null 2>&1 source activate conversion taskset -c ${coreAssociatedConversion} python /home/dbe/git/sf_daq_buffer/scripts/export_file.py ${OUTFILE_RAW} ${OUTFILE} ${RUN_FILE} ${DET_CONFIG_FILE} python /home/dbe/git/sf_daq_buffer/scripts/make_crystfel_list.py ${OUTFILE} ${RUN_FILE} date5=$(date +%s) echo "Finished : "`date` echo -n "Conversion Time : " echo $((date5-date4)) | awk '{print int($1/60)":"int($1%60)}' fi