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Transition format to shared_ptr

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This commit is contained in:
babic_a
2018-02-07 15:54:20 +01:00
parent b1ecf5367d
commit 76adc32747
3 changed files with 939 additions and 912 deletions
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src/H5Format.cpp
+33 -21
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@@ -7,6 +7,7 @@
using namespace std;
hsize_t H5FormatUtils::expand_dataset(H5::DataSet& dataset, hsize_t frame_index, hsize_t dataset_increase_step)
{
hsize_t dataset_rank = 3;
@@ -56,6 +57,12 @@ const boost::any& H5FormatUtils::get_value_from_reference(const string& dataset_
{
try {
auto reference_string = boost::any_cast<string>(value_reference);
#ifdef DEBUG_OUTPUT
cout << "[H5FormatUtils::get_value_from_reference] Getting dataset " << dataset_name;
cout << " reference value '" << reference_string << "'." << endl;
#endif
return values.at(reference_string);
} catch (const boost::bad_any_cast& exception) {
@@ -107,7 +114,7 @@ H5::PredType H5FormatUtils::get_dataset_data_type(const string& type)
H5::DataSet H5FormatUtils::write_dataset(H5::Group& target, const h5_dataset& dataset, const map<string, boost::any>& values)
{
string name = dataset.name;
const string& name = dataset.name;
boost::any value;
// Value is stored directly in the struct.
@@ -264,33 +271,37 @@ void H5FormatUtils::write_format_data(H5::Group& file_node, const h5_parent& for
{
auto node_group = H5FormatUtils::create_group(file_node, format_node.name);
for (const auto item : format_node.items) {
for (const auto item_ptr : format_node.items) {
const h5_base& item = *item_ptr;
if (item->node_type == GROUP) {
auto sub_group = dynamic_cast<h5_group*>(item);
if (item.node_type == GROUP) {
auto sub_group = dynamic_cast<const h5_group&>(item);
write_format_data(node_group, *sub_group, values);
} else if (item->node_type == ATTRIBUTE) {
auto sub_attribute = dynamic_cast<h5_attr*>(item);
write_format_data(node_group, sub_group, values);
H5FormatUtils::write_attribute(node_group, *sub_attribute, values);
} else if (item->node_type == DATASET) {
auto sub_dataset = dynamic_cast<h5_dataset*>(item);
auto current_dataset = H5FormatUtils::write_dataset(node_group, *sub_dataset, values);
} else if (item.node_type == ATTRIBUTE) {
auto sub_attribute = dynamic_cast<const h5_attr&>(item);
H5FormatUtils::write_attribute(node_group, sub_attribute, values);
for (const auto dataset_attr : sub_dataset->items) {
} else if (item.node_type == DATASET) {
auto sub_dataset = dynamic_cast<const h5_dataset&>(item);
auto current_dataset = H5FormatUtils::write_dataset(node_group, sub_dataset, values);
for (const auto dataset_attr_ptr : sub_dataset.items) {
const h5_base& dataset_attr = *dataset_attr_ptr;
// You can specify only attributes inside a dataset.
if (dataset_attr->node_type != ATTRIBUTE) {
if (dataset_attr.node_type != ATTRIBUTE) {
stringstream error_message;
error_message << "Invalid element " << dataset_attr->name << " on dataset " << sub_dataset->name << ". Only attributes allowd.";
error_message << "Invalid element " << dataset_attr.name << " on dataset " << sub_dataset.name << ". Only attributes allowd.";
throw invalid_argument( error_message.str() );
}
auto sub_attribute = dynamic_cast<h5_attr*>(dataset_attr);
auto sub_attribute = dynamic_cast<const h5_attr&>(dataset_attr);
H5FormatUtils::write_attribute(current_dataset, *sub_attribute, values);
H5FormatUtils::write_attribute(current_dataset, sub_attribute, values);
}
}
}
@@ -298,14 +309,15 @@ void H5FormatUtils::write_format_data(H5::Group& file_node, const h5_parent& for
void H5FormatUtils::write_format(H5::H5File& file, const H5Format& format, const std::map<std::string, h5_value>& input_values)
{
auto format_definition = format.get_format_definition();
auto values = format.get_default_values();
auto default_values = format.get_default_values();
map<string, boost::any> format_values(default_values);
format.add_input_values(*values, input_values);
format.add_calculated_values(*values);
format.add_input_values(format_values, input_values);
format.add_calculated_values(format_values);
write_format_data(file, *format_definition, *values);
write_format_data(file, format_definition, format_values);
file.move(format.get_raw_frames_dataset_name().c_str(), format.get_frames_dataset_name().c_str());
}