From 60624bcd6de144550b923d8c6dcb05a2ed6fb014 Mon Sep 17 00:00:00 2001
From: Andrej Babic <andrej.babic@psi.ch>
Date: Wed, 26 Sep 2018 14:43:14 +0200
Subject: [PATCH] Clean up csaxs format

---
 csaxs/CsaxsFormat.cpp | 74 +++++++++++++++++++++++++++++++++++++++++++
 1 file changed, 74 insertions(+)
 create mode 100644 csaxs/CsaxsFormat.cpp

diff --git a/csaxs/CsaxsFormat.cpp b/csaxs/CsaxsFormat.cpp
new file mode 100644
index 0000000..9bba396
--- /dev/null
+++ b/csaxs/CsaxsFormat.cpp
@@ -0,0 +1,74 @@
+#include <memory>
+#include <unordered_map>
+
+#include "config.hpp"
+#include "H5Format.hpp"
+
+using namespace std;
+using s_ptr = shared_ptr<h5_base>;
+
+class CsaxsFormat : public H5Format
+{
+    shared_ptr<unordered_map<string, DATA_TYPE>> input_value_type = NULL;
+    shared_ptr<unordered_map<string, boost::any>> default_values = NULL;
+    shared_ptr<unordered_map<string, std::string>> dataset_move_mapping = NULL;
+    shared_ptr<h5_parent> file_format = NULL;
+
+    public:
+        ~CsaxsFormat(){};
+
+        CsaxsFormat(const string& dataset_name, int n_bad_modules)
+        {
+           
+            // After format has been writen, where to move the raw datasets.
+            dataset_move_mapping.reset(new std::unordered_map<string, string>(
+            {
+                {config::raw_image_dataset_name, "data/" + dataset_name + "/data"},
+            }));
+
+            // Definition of the file format.
+            file_format.reset(
+            new h5_parent("", EMPTY_ROOT, {
+                s_ptr(new h5_group("data", {
+                    s_ptr(new h5_group(dataset_name, {}))
+                }))
+            }));
+        }
+
+        const h5_parent& get_format_definition() const override
+        {
+            return *file_format;
+        }
+
+        const unordered_map<string, boost::any>& get_default_values() const override
+        {
+            return *default_values;
+        }
+
+        void add_calculated_values(unordered_map<string, boost::any>& values) const override
+        {
+            // No calculated values.
+        }
+
+        void add_input_values(unordered_map<string, boost::any>& values,
+            const unordered_map<string, boost::any>& input_values) const override
+        {
+            // Input value mapping is 1:1.
+            for (const auto& input_value : input_values) {
+                const auto& name = input_value.first;
+                const auto& value = input_value.second;
+
+                values[name] = value;
+            }
+        }
+
+        const std::unordered_map<string, DATA_TYPE>& get_input_value_type() const override
+        {
+            return *input_value_type;
+        }
+
+        const unordered_map<string, string>& get_dataset_move_mapping() const override {
+            return *dataset_move_mapping;
+        }
+
+};