Fix memory leak in streak finder #3
@@ -8,7 +8,6 @@ https://github.com/simply-nicky/streak_finder/
|
||||
"""
|
||||
import h5py
|
||||
import numpy as np
|
||||
from psutil import virtual_memory
|
||||
from streak_finder.label import Structure2D
|
||||
from streak_finder.streak_finder import detect_peaks, detect_streaks, filter_peaks
|
||||
from streak_finder._src.src.median import median
|
||||
@@ -52,7 +51,6 @@ def calc_streakfinder_analysis(results, data, pf_pixel_mask):
|
||||
_calc_streakfinder_analysis(results, snr, pf_pixel_mask)
|
||||
except Exception as error: # Broad exception - we don't want to break anything here
|
||||
results["cbd_error"] = f"StreakFind - Error processing CBD data:\n{error}"
|
||||
print(f"mem used after {virtual_memory().used // pow(2, 30)} Gb \n")
|
||||
|
||||
return data
|
||||
|
||||
@@ -142,8 +140,8 @@ def _calc_streakfinder_analysis(results, snr, mask):
|
||||
]
|
||||
|
||||
if not all(param in results.keys() for param in params_required):
|
||||
print(f"ERROR: Not enough parameters for streak finder analysis. Skipping.\n"
|
||||
f"{params_required=}")
|
||||
results["cbd_error"] = (f"ERROR: Not enough parameters for streak finder analysis. "
|
||||
f"Skipping.\n{params_required=}")
|
||||
return
|
||||
|
||||
peak_structure_radius = results["cbd_peak_structure_radius"] # peak
|
||||
@@ -164,7 +162,6 @@ def _calc_streakfinder_analysis(results, snr, mask):
|
||||
y_center = results.get("beam_center_y", None)
|
||||
|
||||
mask_rois = results.get("cbd_mask_rois", []) # list of [x_min, x_max, y_min, y_max]
|
||||
|
||||
for mask_roi in mask_rois:
|
||||
mask[mask_roi[2]: mask_roi[3], mask_roi[0]: mask_roi[1]] = False
|
||||
|
||||
|
||||
Reference in New Issue
Block a user