diff --git a/dap/algos/peakfind.py b/dap/algos/peakfind.py index 82ea29c..0ed3932 100644 --- a/dap/algos/peakfind.py +++ b/dap/algos/peakfind.py @@ -13,8 +13,9 @@ def calc_peakfinder_analysis(results, data, pixel_mask_pf): if k not in results: return - x_beam = results["beam_center_x"] - 0.5 # to coordinates where position of first pixel/point is 0.5, 0.5 - y_beam = results["beam_center_y"] - 0.5 # to coordinates where position of first pixel/point is 0.5, 0.5 + # to coordinates where position of first pixel/point is 0.5, 0.5 + x_beam = results["beam_center_x"] - 0.5 + y_beam = results["beam_center_y"] - 0.5 hitfinder_min_snr = results["hitfinder_min_snr"] hitfinder_min_pix_count = int(results["hitfinder_min_pix_count"]) @@ -47,9 +48,11 @@ def calc_peakfinder_analysis(results, data, pixel_mask_pf): number_of_spots = len(peak_list_x) results["number_of_spots"] = number_of_spots + + # to coordinates where position of first pixel/point is 1, 1 results["spot_x"] = [x + 0.5 for x in peak_list_x] results["spot_y"] = [y + 0.5 for y in peak_list_y] - results["spot_intensity"] = copy(peak_list_value) + results["spot_intensity"] = copy(peak_list_value) #TODO: why is this copy needed? npeaks_threshold_hit = results.get("npeaks_threshold_hit", 15)