From 803503eea52eec33408a1c85dc87e1757cd36303 Mon Sep 17 00:00:00 2001 From: ozerov_d Date: Wed, 6 Sep 2023 15:26:50 +0200 Subject: [PATCH] Update README.md --- README.md | 9 ++++++--- 1 file changed, 6 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index b6cdcd0..c84f168 100644 --- a/README.md +++ b/README.md @@ -6,7 +6,6 @@ Runs on files produced by [sf-daq](https://github.com/paulscherrerinstitute/sf_d # Table of Contents * [Installation](#installation) -* [Configuration files](#config) * [Google Authentication](#google-api) * [Usage](#usage) * [Before beamtime](#usage1) @@ -16,6 +15,7 @@ Runs on files produced by [sf-daq](https://github.com/paulscherrerinstitute/sf_d * [data re-processing](#usage2_reprocess) * [pausing indexing](#usage2_pause) * [After beamtime](#usage3) +* [Configuration files](#config) ## Description Automatic Processing tool checks for the new files/runs produced by sf-daq and runs automatically workload (currently - indexing (by crystfel)) and fills logbook (google spreadsheet) with information with some daq parameters from the sf-daq and processing. @@ -23,7 +23,7 @@ Automatic Processing tool checks for the new files/runs produced by sf-daq and r ## Installation ### Pre-installed software (recommended) -Automatic Processing tool is installed in /sf/jungfrau/applications/ap place and it's recommended to use if from that place (all examples below will be using that tool place). +Automatic Processing tool is installed in **/sf/jungfrau/applications/ap** place and it's recommended to use if from that place (all examples below will be using that tool place). Installed conda environment can be activated with ``` @@ -32,10 +32,13 @@ $ conda activate ap ``` ### Installation from source -Automatic Processing tool can also be installed from scratch with: +Automatic Processing tool can also be installed from scratch (put this to the place which is accessible from online computing nodes. res/ directory of corresponding pgroup is perfect place for this): ``` $ git clone https://gitlab.psi.ch/sf-daq/ap.git # or via ssh with # git clone git@gitlab.psi.ch:sf-daq/ap.git +``` +Needed conda environment can be sourced/used from the common place. In case new conda environment is needed, please do (and don't use res/ for this purpose): +``` $ conda create -n ap gspread numpy matplotlib $ conda activate ap ```