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added mill dir

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This commit is contained in:
augustin_s
2025-04-25 11:51:19 +02:00
parent 0ebfff17b5
commit 65c8045f50
1 changed files with 19 additions and 6 deletions
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25
scripts/run_index.sh
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@ -30,6 +30,13 @@ else
FILESTREAM=stream.stream FILESTREAM=stream.stream
fi fi
if [ $# -ge 5 ]
then
MILLDIR=$5
else
MILLDIR=unknown-mill
fi
# list of indexing methods : xgandalf-latt-cell,asdf-latt-cell,dirax-latt-cell,mosflm-latt-cell # list of indexing methods : xgandalf-latt-cell,asdf-latt-cell,dirax-latt-cell,mosflm-latt-cell
# but usually all is indexed by xgandalf (99.99%) # but usually all is indexed by xgandalf (99.99%)
@ -46,7 +53,7 @@ then
--peaks=peakfinder8 \ --peaks=peakfinder8 \
--integration=rings-grad \ --integration=rings-grad \
--tolerance=10.0,10.0,10.0,2,3,2 \ --tolerance=10.0,10.0,10.0,2,3,2 \
--threshold=2000 \ --threshold=10 \
--min-snr=5 \ --min-snr=5 \
--int-radius=2,3,6 \ --int-radius=2,3,6 \
-j ${NP} \ -j ${NP} \
@ -54,8 +61,10 @@ then
--no-retry \ --no-retry \
--check-peaks \ --check-peaks \
--max-res=3000 \ --max-res=3000 \
--min-pix-count=1 \ --min-pix-count=2 \
--local-bg-radius=4 --local-bg-radius=4 \
--mille \
--mille-dir=${MILLDIR}
else else
@ -66,7 +75,7 @@ else
--peaks=peakfinder8 \ --peaks=peakfinder8 \
--integration=rings-grad \ --integration=rings-grad \
--tolerance=10.0,10.0,10.0,2,2,2 \ --tolerance=10.0,10.0,10.0,2,2,2 \
--threshold=2000 \ --threshold=10 \
--min-snr=5 \ --min-snr=5 \
--int-radius=2,3,6 \ --int-radius=2,3,6 \
-j ${NP} \ -j ${NP} \
@ -74,8 +83,12 @@ else
--no-retry \ --no-retry \
--check-peaks \ --check-peaks \
--max-res=3000 \ --max-res=3000 \
--min-pix-count=1 \ --min-pix-count=2 \
--local-bg-radius=4 --local-bg-radius=4 \
--mille \
--mille-dir=${MILLDIR}
fi fi
chmod -R g+rwx ${MILLDIR}