RugnuxLiveRefinement¶
The placed model refined against the merge it was placed on, as the report’s REFINE_ keys state it. Set where a placed model was refined or its refinement failed; absent where the model was not placed or refinement was skipped. On a machine without a GPU it runs on the CPU, slower, and the run’s deadline or cancel can cut it.
Properties¶
Name | Type | Description | Notes |
|---|---|---|---|
performed | bool | Refinement ran; false with `reason` where it failed | |
cancelled | bool | The deadline or a cancel cut the refinement short: the weight trials that ran were chosen among, the rest left out (cut before the first, the model is the placement’s) | |
reason | str | Why refinement did not run to the end; empty otherwise | |
on_gpu | bool | ||
seconds | float | Wall time of the refinement | |
r_work | float | R-work of the refined model (after the restrained stage, else after the rigid body and grouped B) | [optional] |
r_free | float | R-free of the refined model, on the same reflections as `r_work` | [optional] |
rmsd_bonds_a | float | RMS deviation of the bond lengths from the dictionary, where the restrained stage ran | [optional] |
rmsd_angles_deg | float | RMS deviation of the bond angles from the dictionary, where the restrained stage ran | [optional] |
blob_count | int | Unexplained blobs of the refined model’s mFo-DFc map (above 3 sigma, peaking above 4) | |
blobs | The strongest blobs, at most 50, strongest first |
Example¶
from jfjoch_client.models.rugnux_live_refinement import RugnuxLiveRefinement
# TODO update the JSON string below
json = "{}"
# create an instance of RugnuxLiveRefinement from a JSON string
rugnux_live_refinement_instance = RugnuxLiveRefinement.from_json(json)
# print the JSON string representation of the object
print(RugnuxLiveRefinement.to_json())
# convert the object into a dict
rugnux_live_refinement_dict = rugnux_live_refinement_instance.to_dict()
# create an instance of RugnuxLiveRefinement from a dict
rugnux_live_refinement_from_dict = RugnuxLiveRefinement.from_dict(rugnux_live_refinement_dict)