RugnuxLiveModel

What the run made of the model it was given, as the report’s MODEL VALIDATION section states it. The R-factors here are those of the placed model with its own coordinates and B factors; what refinement made of it is in refinement. A value that is absent was not computed - the model was not placed, or not by molecular replacement.

Properties

Name	Type	Description	Notes
placement	str	RIGID_BODY (the model fits where it is), MR (molecular replacement placed it) or NOT_PLACED
model_name	str
predicted	bool	Searched for as a predicted model
reason	str	Why the model could not be searched for or validated; empty otherwise
r_work	float		[optional]
r_free	float		[optional]
cc_model	float	Correlation of the merged intensities with the placed model’s, over all reflections	[optional]
fit_sigma	float	How far R-work stands below that of the same model in random orientations, in standard deviations	[optional]
map_atom_sigma	float	Mean 2mFo-DFc value at the atom centres, in map sigma	[optional]
rigid_body_angle_deg	float		[optional]
rigid_body_shift_a	float		[optional]
mr_decision	str	Molecular replacement’s decision (AGREES, ENANTIOMORPH, SPACE_GROUP, TWIN_SUBGROUP, or why it placed nothing); empty where it did not run
mr_space_group	str	The group molecular replacement placed the model in; empty where it placed none
copies	int	Copies placed by molecular replacement	[optional]
tf_z	float	Translation-function Z-score, the highest of the copies’	[optional]
rf_z	float	Rotation-function Z-score of the first copy’s orientation	[optional]
llg_z	float	Likelihood Z-score after the rigid body, where a copy’s translation function did not stand out	[optional]
mr_d_min	float	High-resolution limit of the molecular-replacement search, in Angstrom	[optional]
anomalous_site	str	Atom with the strongest anomalous difference density, e.g. "SG CYS A7"; empty where there is no anomalous map
anomalous_site_sigma	float	Anomalous difference density at that atom, in map sigma	[optional]
refinement	RugnuxLiveRefinement		[optional]

Example

from jfjoch_client.models.rugnux_live_model import RugnuxLiveModel

# TODO update the JSON string below
json = "{}"
# create an instance of RugnuxLiveModel from a JSON string
rugnux_live_model_instance = RugnuxLiveModel.from_json(json)
# print the JSON string representation of the object
print(RugnuxLiveModel.to_json())

# convert the object into a dict
rugnux_live_model_dict = rugnux_live_model_instance.to_dict()
# create an instance of RugnuxLiveModel from a dict
rugnux_live_model_from_dict = RugnuxLiveModel.from_dict(rugnux_live_model_dict)

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