631 lines
22 KiB
Python
631 lines
22 KiB
Python
###################################################################################################
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# Deployment specific global definitions - executed after startup.py
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###################################################################################################
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import ntpath
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import traceback
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from rsync import *
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get_context().dataManager.createLogs=False
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"""
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OTF_START = "X11MA-OTF:GO"
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OTF_E1 = "X11MA-OTF:E1"
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OTF_E2 = "X11MA-OTF:E2"
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OTF_TIME = "X11MA-OTF:TIME"
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OTF_FID = "X11MA-OTF:FID"
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OTF_FTS = "X11MA-OTF:FTSTAMP"
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OTF_FILE = "X11MA-OTF:FNAME"
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ID1_MODE = "X11MA-ID1:MODE"
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ID2_MODE = "X11MA-ID2:MODE"
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ID1_ALPHA = "X11MA-ID1:ALPHA"
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ID2_ALPHA = "X11MA-ID2:ALPHA"
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ID1_OFF = "X11MA-ID1:ENERGY-OFFS"
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ID2_OFF = "X11MA-ID2:ENERGY-OFFS"
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ENERGY_SP = "X11MA-PHS:E_SP"f
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"""
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ALL_DONE = "X11PHS:alldone"
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VG10_SET = "X11MA-EPS-VG10:SET"
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VG10_GET = "X11MA-OP-VG10:OPEN"
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VG11_SET = "X11MA-EPS-VG11:SET"
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VG11_GET = "X11MA-OP-VG11:OPEN"
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VG12_SET = "X11MA-EPS-VG12:SET"
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VG12_GET = "X11MA-OP-VG12:OPEN"
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VG13_SET = "X11MA-EPS-VG13:SET"
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VG13_GET = "X11MA-OP-VG13:OPEN"
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"""
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LPP_DELAY = "X11MA-ES2-4CHT:SET2-DELAY"
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LPP_FINE_DELAY = "X11MA-ES2-4CHT:SET2-FINE"
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TIME_DELAY_SET = "X11MA-ES2:Theta-New.A"
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TIME_DELAY_VAL = "X11MA-ES2:Theta-Cur.VAL"
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TIME_DELAY_START = "X11MA-ES2:SCAN-START"
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TIME_DELAY_COMPLETE = "X11MA-ES2-scan1.SMSG"
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TBT_MAG = "X11MA-LSCI632:MFIELD"
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"
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"""
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def get_next_fid(folder, prefix):
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try:
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import glob
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files = glob.glob(folder + prefix + '*_*.dat')
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last = max(files)
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index = int (last[last.rfind('_')+1 : last.rfind('.')]) + 1
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return index
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except:
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return 0
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def wait_channel(name, value, timeout =None, type='s'):
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print "Waiting " + str(name) + " = " + str(value)
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cawait(name, value, timeout = timeout, type=type)
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print "Done"
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def wait_device(dev, value, timeout=-1):
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timeout = int(timeout *1000) if timeout>0 else timeout
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dev.waitValue(value,timeout)
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def open_vg10():
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if caget (VG10_GET,'i') != 1:
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caput(VG10_SET, 0)
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time.sleep(0.1)
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caput(VG10_SET, 1)
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def close_vg10():
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if caget (VG10_GET,'i') == 1:
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caput(VG10_SET, 0)
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time.sleep(0.1)
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caput(VG10_SET, 1)
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def open_vg11():
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if caget (VG11_GET,'i') != 1:
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caput(VG11_SET, 0)
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time.sleep(0.1)
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caput(VG11_SET, 1)
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def close_vg11():
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if caget (VG11_GET,'i') == 1:
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caput(VG11_SET, 0)
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time.sleep(0.1)
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caput(VG11_SET, 1)
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def open_vg12():
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if caget (VG12_GET,'i') != 1:
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caput(VG12_SET, 0)
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time.sleep(0.1)
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caput(VG12_SET, 1)
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def close_vg12():
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if caget (VG12_GET,'i') == 1:
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caput(VG12_SET, 0)
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time.sleep(0.1)
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caput(VG12_SET, 1)
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def open_vg13():
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if caget (VG13_GET,'i') != 1:
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caput(VG13_SET, 0)
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time.sleep(0.1)
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caput(VG13_SET, 1)
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def close_vg13():
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if caget (VG13_GET,'i') == 1:
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caput(VG13_SET, 0)
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time.sleep(0.1)
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caput(VG13_SET, 1)
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def plot_file(file_name, ctxt = None):
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"""
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"""
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sep = "\t"
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with open(file_name) as f:
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header = f.readline()[1:].split(sep)
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table = Table.loadRaw(file_name, sep, '#',header)
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plots = plot(table, title = ctxt)
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def has_beam():
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"""
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"""
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return beam_status.readback.read() == "Light Available"
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def is_id_error():
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return (id_error.read()==0)
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def check_id_error():
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if is_id_error():
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raise Exception ("ID error: check ID status")
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###################################################################################################
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#Default scan callbacks
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###################################################################################################
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def before_sample():
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pass
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def after_sample():
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check_id_error()
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##################### Convert_File function #############################
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"""
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def convert_file(input_file_name, output_file_name):
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sep = "\t"
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line_sep = "\r\n"
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field = caget('X11MA-XMCD:Ireadout')
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with open(input_file_name) as inp:
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lines = inp.readlines()
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with open(output_file_name, "wb") as out:
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out.write("Energy" + sep + "Io" + sep + "CADC2" + sep + "CADC3" + sep + "Mag" + line_sep)
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s = sep + " " #File format has a space before numeric values
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for line in lines[1:]:
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line = line.strip()
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if line=="": break
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try:
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(Ecrbk,CADC1, CADC2, NORM, CADC3, CADC4, MCurr, cffrbk, ID1Erbk, ID2Erbk, vTime) = line.split(" ")
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out.write(Ecrbk + s + CADC1 + s + CADC2 + s + CADC3 + s + str(field) +line_sep)
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except:
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traceback.print_exc()
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"""
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def convert_file(input_file_name, output_file_name, pol = None):
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print "Converting data file: " + input_file_name + " to " + output_file_name
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#print "File converted to: ",output_file_name
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sep = "\t"
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line_sep = "\n"
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MODE = pol_mode.read()
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if pol is None:
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pol = pol_angle.read() if (MODE == "LINEAR") else pol_mode.readback.read()
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with open(input_file_name) as inp:
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lines = inp.readlines()
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with open(output_file_name, "wb") as out:
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(db, st) = ("java.lang.Double", "java.lang.String")
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out.write("#Energy" + sep + "CADC1" + sep + "CADC2" + sep + "CADC3" + sep + "NORMtey" + sep + "NORMdiode" + line_sep)
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out.write("#"+ db + sep + db + sep + db + sep + db + sep + db + sep + db + line_sep)
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s = sep
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for line in lines[1:]:
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line = line.strip()
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if line=="": break
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try:
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(Ecrbk, CADC1, CADC2, CADC3, CADC4, MCurr, cffrbk, IDErbk, time) = line.split(" ")
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normtey=repr( float(CADC2)/float(CADC1))
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normdiode=repr(float(CADC3)/float(CADC1))
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#field=caget(MAG)
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out.write(Ecrbk + s + CADC1 + s + CADC2 + s + CADC3 + s + normtey + s + normdiode + line_sep)
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except:
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traceback.print_exc()
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#os.rename(input_file_name, get_context().setup.expandPath("{data}/OTF/" + ntpath.basename(input_file_name)))
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def convert_file_full(input_file_name, output_file_name, pol = None):
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print "Converting data file: " + input_file_name + " to " + output_file_name
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#print "File converted to: ",output_file_name
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sep = "\t"
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line_sep = "\n"
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MODE = pol_mode.read()
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if pol is None:
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pol = pol_angle.read() if (MODE == "LINEAR") else pol_mode.readback.read()
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with open(input_file_name) as inp:
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lines = inp.readlines()
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with open(output_file_name, "wb") as out:
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(db, st) = ("java.lang.Double", "java.lang.String")
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out.write("#Energy" + sep + "CADC1" + sep + "CADC2" + sep + "CADC3" + sep + "CADC4" + sep + "CADC5" + sep + "MCurr" + sep + "Time" + sep + "FieldX" + sep + "FieldZ" + sep + "Pol" + sep + "Temperature" + sep + "NORMtey" + sep + "NORMdiode" + line_sep)
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out.write("#"+ db + sep + db + sep + db + sep + db + sep + db + sep + db + sep + db + sep + db + sep + db + sep + db + sep + st + sep + db + sep + db + sep + db + line_sep)
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s = sep
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for line in lines[1:]:
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line = line.strip()
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if line=="": break
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try:
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(Ecrbk, CADC1, CADC2, CADC3, CADC4, MCurr, cffrbk, IDErbk, time) = line.split(" ")
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normtey=repr( float(CADC2)/float(CADC1))
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normdiode=repr(float(CADC3)/float(CADC1))
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CADC5=repr(0.0)
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mcurr=repr(machine_cur.read())
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fieldx=repr(field.read())
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fieldz=repr(0.0)
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temp=repr(Temp.read())
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out.write(Ecrbk + s + CADC1 + s + CADC2 + s + CADC3 + s + CADC4 + s + CADC5 + s + mcurr + s + time + s + fieldx + s + fieldz + s + str(pol) + s + temp + s + normtey + s + normdiode + line_sep)
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except:
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traceback.print_exc()
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#os.rename(input_file_name, get_context().setup.expandPath("{data}/OTF/" + ntpath.basename(input_file_name)))
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###################################################################################################
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#OTF function
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###################################################################################################
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def otf(start, end, time, delay = 0.0, mode = None, offset = None, alpha = None, name = None, folder = 'TEST'):
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"""
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"""
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if name is None:
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name = get_exec_pars().name
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#folder = get_context().setup.expandPath("{year}_{month}/{date}");
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run("templates/EnergyScan", {"E1":start, "E2":end, "TIME":time, "DELAY":float(delay), "MODE":mode, "OFFSET":(offset), "FOLDER":folder, "FILE":name, "ALPHA":float(alpha) if alpha is not None else None})
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###################################################################################################
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#Devices
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###################################################################################################
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for dev in ["eiger", "id", "chopper", "LEEM2000", "diag"]:
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try:
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run("devices/" + dev)
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except:
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log(sys.exc_info()[1], False)
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###################################################################################################
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#Beamline and Machine status
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###################################################################################################
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def assert_machine_ok(wait = True):
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print "Checking machine..."
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if get_dry_run():
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return
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ring_status=get_ring_status()
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old_ring_status=ring_status
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checkRing=0
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if ring_status==5:
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log ("FB off")
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#checkRing=1
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if ring_status==0:
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log ("Machine down")
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checkRing=2
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if checkRing>0:
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status=False
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while not status:
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id1_status=get_id_control(1)
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id2_status=get_id_control(2)
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ring_status=get_ring_status()
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if old_ring_status != ring_status:
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if ring_status == 0:
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log("Machine down")
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checkRing=2
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elif ring_status == 1:
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log("Inj. Stopped")
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checkRing=2
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elif ring_status == 2:
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log("Accumulating.")
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checkRing=2
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elif ring_status == 3:
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log("Accumulating")
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checkRing=2
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elif ring_status == 4:
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log("Top-up ready, Gap still open")
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checkRing=2
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elif ring_status == 5:
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log("Light-Available, no OFB")
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checkRing=2
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elif ring_status == 6:
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log("Light Available")
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checkRing=2
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old_ring_status=ring_status
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status= (ring_status ==6) and (id1_status==1) and (id2_status==1)
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if not wait:
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raise Exception ("Ring error: " + str(ring_status))
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time.sleep(1)
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print "Machine ok"
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def assert_beamline_ok():
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print "Checking beamline..."
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if get_dry_run():
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return
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checkbeamline=0
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message=[ "PLC error","Encoder error", "Feedforward error","Operator control", "Moving timeout", "Interlock"]
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ID = get_setting("ID")
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if ID == "ID1":
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id1_status=get_id_status(1)
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id2_status=0
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elif ID == "ID2":
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id1_status=0
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id2_status=get_id_status(2)
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if ID == "ID1_ID2":
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id1_status=get_id_status(1)
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id2_status=get_id_status(2)
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if id1_status >= 1:
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id1_error=get_id_error(1)
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for bit in range (5,-1, -1):
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if id1_error & (2**bit):
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log ("ID1 "+ str(message[bit]))
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id1_error=id1_error-(2**bit)
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if id2_status >= 1:
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id2_error=get_id_error(2)
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for bit in range (5,-1, -1):
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if id2_error & (2**bit):
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log ("ID2 "+ str(message[bit]))
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id2_error=id2_error-(2**bit)
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if id1_status >= 1:
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raise Exception("ID1 error: " + str(id1_status))
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if id2_status >= 1:
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raise Exception("ID2 error: "+ str(id2_status))
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def assert_status_ok(wait = True):
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assert_machine_ok(wait)
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assert_beamline_ok()
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###################################################################################################
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#Manual log file
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###################################################################################################
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"""
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def get_log_file():
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return data_path + "/logs.txt"
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def write_logfile(msg):
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log(msg, True)
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if not os.path.exists(os.path.dirname(get_log_file())):
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os.makedirs(os.path.dirname(get_log_file()))
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with open( get_log_file(), "a") as myfile:
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myfile.write(msgv + "\n")
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"""
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###################################################################################################
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#Energy
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###################################################################################################
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"""
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def put_energy(v):
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if get_dry_run(): return
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if v>91 and v<2500:
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caput("X11PHS:alldone",0)
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caput("X11PHS-E:GO.A",v)
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else:
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log("Energy out of range (91-2500) :" + str(v))
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def is_done():
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#1: done move
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#0: moving
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return True if caget("X11PHS:alldone") else False
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|
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def wait_done():
|
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if get_dry_run(): return
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time.sleep(1.0) #in order to reduce trafic on the IOC
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wait_channel("X11PHS:alldone", 1)
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"""
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def put_energy(v):
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energy.write(float(v))
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time.sleep(0.5)
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wait_channel(ALL_DONE, 1, type = 'i')
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|
|
|
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def change_energy(v):
|
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if v<91 or v>2500:
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raise Exception ("Invalid energy: " + str(v))
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print "Setting energy: " + str(v)
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if get_dry_run():
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return
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put_energy(v)
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|
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###################################################################################################
|
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#Image measurements
|
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###################################################################################################
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|
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from ijutils import get_measurement, load_array
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import ch.psi.pshell.imaging.Filter as Filter
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from ch.psi.pshell.imaging.Overlays import Text
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import ch.psi.pshell.imaging.Pen as Pen
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|
|
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class MeasurementsFilter(Filter):
|
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def __init__(self, measurements):
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self.overlay = Text(Pen(java.awt.Color.GREEN.darker()), "", \
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java.awt.Font("Verdana", java.awt.Font.PLAIN, 12), java.awt.Point(20,20))
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self.measurements = measurements
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self.source = None
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self.renderer = None
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|
|
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def process(self, image, data):
|
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try:
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ip = load_array(data.array, data.width, data.height)
|
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msg = ""
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if self.measurements is not None:
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for measurement in self.measurements:
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val = get_measurement(ip,measurement)
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msg = msg + "%s = %1.4f\n" % (measurement,val)
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self.overlay.update(msg)
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|
except:
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self.overlay.update(str(sys.exc_info()[1]))
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return image
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|
|
|
def start(self, source, renderer=None):
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self.stop()
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self.source = source
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self.renderer = renderer if (renderer is not None) else show_panel(source)
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self.source.setFilter(self)
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self.renderer.addOverlay(self.overlay)
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|
|
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def stop(self):
|
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if self.renderer is not None:
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self.renderer.removeOverlay(self.overlay)
|
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if self.source is not None:
|
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self.source.setFilter(None)
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self.source = None
|
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self.renderer = None
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|
|
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filter_measurements = None
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|
|
|
def start_measurements(measurements=["StdDev"], source = image, renderer=None):
|
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global filter_measurements
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stop_measurements()
|
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filter_measurements = MeasurementsFilter(measurements)
|
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filter_measurements.start(string_to_obj(source), string_to_obj(renderer))
|
|
|
|
def stop_measurements():
|
|
global filter_measurements
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|
if filter_measurements is not None:
|
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filter_measurements.stop()
|
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filter_measurements = None
|
|
|
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###################################################################################################
|
|
#Rsync
|
|
###################################################################################################
|
|
|
|
def _check_sync_user_data(path):
|
|
rsync_user = get_setting("RSYNC_USER");
|
|
rsync_path = get_setting("RSYNC_PATH");
|
|
rsync_host = get_setting("RSYNC_HOST");
|
|
rsync_del = str(get_setting("RSYNC_DEL")).lower() == "true"
|
|
if rsync_user:
|
|
if not rsync_path:
|
|
rsync_path = "~/Data1"
|
|
else:
|
|
rsync_path = "~/Data1/" + rsync_path
|
|
if not rsync_host:
|
|
rsync_host = "localhost"
|
|
if path is not None:
|
|
sync_user_data(rsync_user, path, rsync_path, host=rsync_host, remove_local_folder=rsync_del, remove_local_files=False)
|
|
time.sleep(5.0)
|
|
|
|
_FORK_SYNC_USER = True
|
|
def check_sync_user_data(path, do_fork=_FORK_SYNC_USER):
|
|
if (do_fork):
|
|
fork((_check_sync_user_data, (path,)), )
|
|
else:
|
|
_check_sync_user_data(path)
|
|
|
|
_CURRENT_DATA_PATH = None
|
|
def on_change_data_path(path):
|
|
print "on_change_data_path: " + str(path)
|
|
global _CURRENT_DATA_PATH
|
|
if path is None:
|
|
print "Close data path"
|
|
if _CURRENT_DATA_PATH is not None:
|
|
check_sync_user_data(_CURRENT_DATA_PATH)
|
|
else:
|
|
print "Open data path: " + str(path)
|
|
_CURRENT_DATA_PATH = path
|
|
fork(write_metadata)
|
|
|
|
|
|
###################################################################################################
|
|
#Sounds
|
|
###################################################################################################
|
|
def on_command_started(info):
|
|
if not get_context().isLocalMode():
|
|
if info.script and not info.background:
|
|
play_sound("start")
|
|
|
|
def on_command_finished(info):
|
|
if not get_context().isLocalMode():
|
|
if info.script and not info.background:
|
|
if (info.isError()):
|
|
if not info.isAborted():
|
|
play_sound("error")
|
|
else:
|
|
play_sound("success")
|
|
|
|
|
|
import ch.psi.utils.Audio as Audio
|
|
import java.io.File as File
|
|
|
|
def play_sound(name):
|
|
try:
|
|
Audio.playFile(File(get_context().setup.expandPath("{home}/sounds/" + name + ".wav")), False)
|
|
except:
|
|
log("Error playing sound " + name + ": " + str(sys.exc_info()[1]), False)
|
|
|
|
|
|
###################################################################################################
|
|
#Beamline setup
|
|
###################################################################################################
|
|
|
|
def apply_beamline_setup(ID,ENERGY,POL_ID_1,ALPHA_ID_1,HARMONIC_ID_1,OFFSET_ID_1,POL_ID_2,ALPHA_ID_2,HARMONIC_ID_2,OFFSET_ID_2):
|
|
if get_dry_run():
|
|
return
|
|
|
|
if ID=='ID1':
|
|
caput('X11PHS-E:OPT',1)
|
|
elif ID=='ID2':
|
|
caput('X11PHS-E:OPT',2)
|
|
elif ID =='ID1_ID2':
|
|
caput('X11PHS-E:OPT',3)
|
|
|
|
if ID == "ID1":
|
|
#current_pol=POL_IDS[POL_ID_1] #get_id_pol(1)
|
|
put_id_pol(1,POL_ID_1, ALPHA_ID_1 if (POL_ID_1=="Lin") else None )
|
|
caput('X11MA-ID2-GAP:SET',100) #open Gap ID2
|
|
id1_harmonic.write(int(HARMONIC_ID_1))
|
|
put_id_offset(1, float(OFFSET_ID_1)) #offset on ID1
|
|
|
|
elif ID == "ID2":
|
|
#current_pol=POL_IDS[POL_ID_2]#get_id_pol(2)
|
|
put_id_pol(2,POL_ID_2, ALPHA_ID_2 if (POL_ID_2=="Lin") else None )
|
|
caput('X11MA-ID1-GAP:SET',100) #open Gap ID1
|
|
id2_harmonic.write(int(HARMONIC_ID_2))
|
|
put_id_offset(2, float(OFFSET_ID_2)) #offset on ID2
|
|
|
|
elif ID == "ID1_ID2":
|
|
#polID1=POL_IDS[POL_ID_1]
|
|
#polID2=POL_IDS[POL_ID_2]
|
|
put_id_pol(1,POL_ID_1, ALPHA_ID_1 if (POL_ID_1=="Lin") else None )
|
|
put_id_pol(2,POL_ID_2, ALPHA_ID_2 if (POL_ID_2=="Lin") else None )
|
|
#current_pol=polID1
|
|
id1_harmonic.write(int(HARMONIC_ID_1))
|
|
id2_harmonic.write(int(HARMONIC_ID_2))
|
|
put_id_offset(1, float(OFFSET_ID_1)) #offset on ID1
|
|
put_id_offset(2, float(OFFSET_ID_2)) #offset on ID2
|
|
|
|
#wait_channel("X11PHS:alldone", 1)
|
|
energy.write(ENERGY)
|
|
wait_channel("X11PHS:alldone", 1)
|
|
|
|
def set_beamline_setup(ID,ENERGY,POL_ID_1,ALPHA_ID_1,HARMONIC_ID_1,OFFSET_ID_1,POL_ID_2,ALPHA_ID_2,HARMONIC_ID_2,OFFSET_ID_2):
|
|
set_setting("ID", ID)
|
|
set_setting("ENERGY", ENERGY)
|
|
set_setting("POL_ID_1", POL_ID_1)
|
|
set_setting("ALPHA_ID_1", ALPHA_ID_1)
|
|
set_setting("HARMONIC_ID_1", HARMONIC_ID_1)
|
|
set_setting("OFFSET_ID_1", OFFSET_ID_1)
|
|
set_setting("POL_ID_2", POL_ID_2)
|
|
set_setting("ALPHA_ID_2", ALPHA_ID_2)
|
|
set_setting("HARMONIC_ID_2", HARMONIC_ID_2)
|
|
set_setting("OFFSET_ID_2", OFFSET_ID_2)
|
|
apply_beamline_setup(ID,ENERGY,POL_ID_1,ALPHA_ID_1,HARMONIC_ID_1,OFFSET_ID_1,POL_ID_2,ALPHA_ID_2,HARMONIC_ID_2,OFFSET_ID_2)
|
|
|
|
#Restore beamline initial config
|
|
def restore_beamline_setup():
|
|
ID = get_setting("ID")
|
|
ENERGY = float(get_setting("ENERGY"))
|
|
POL_ID_1 = get_setting("POL_ID_1")
|
|
ALPHA_ID_1 = float(get_setting("ALPHA_ID_1"))
|
|
HARMONIC_ID_1 = get_setting("HARMONIC_ID_1")
|
|
OFFSET_ID_1 = float(get_setting("OFFSET_ID_1"))
|
|
POL_ID_2 = get_setting("POL_ID_2")
|
|
ALPHA_ID_2 = float(get_setting("ALPHA_ID_2"))
|
|
HARMONIC_ID_2 = get_setting("HARMONIC_ID_2")
|
|
OFFSET_ID_2 = float(get_setting("OFFSET_ID_2"))
|
|
apply_beamline_setup(ID,ENERGY,POL_ID_1,ALPHA_ID_1,HARMONIC_ID_1,OFFSET_ID_1,POL_ID_2,ALPHA_ID_2,HARMONIC_ID_2,OFFSET_ID_2)
|
|
|
|
|
|
###################################################################################################
|
|
#Settings
|
|
###################################################################################################
|
|
|
|
|
|
def set_dry_run(value):
|
|
set_setting("DRY_RUN", bool(value))
|
|
|
|
def get_dry_run():
|
|
return str(get_setting("DRY_RUN")).lower() == "true"
|
|
|
|
def set_outliers_threshold(value):
|
|
set_setting("OUTLIERS_THRESHOLD", int(value))
|
|
|
|
def get_outliers_threshold():
|
|
try:
|
|
return int(get_setting("OUTLIERS_THRESHOLD"))
|
|
except:
|
|
return 0
|
|
|
|
def get_outliers_mask_file():
|
|
return get_setting("OUTLIERS_MASK_FILE")
|
|
|
|
def write_metadata():
|
|
for name in ["proposer", "proposal", "pgroup", "sample"]:
|
|
value = get_setting(name)
|
|
set_attribute("/", name, value)
|
|
setting = get_setting("authors")
|
|
set_attribute("/", "authors", setting.split("|") if setting is not None else [""])
|
|
|
|
|