/*
 * Copyright (c) 2014 Paul Scherrer Institute. All rights reserved.
 */

import java.awt.Component;
import java.nio.file.Path;
import java.nio.file.Paths;
import java.util.HashMap;
import java.util.logging.Level;
import javax.swing.JLabel;
import ch.psi.utils.State;
import ch.psi.utils.swing.Editor.EditorDialog;
import ch.psi.pshell.plot.LinePlotBase;
import ch.psi.pshell.plot.LinePlotSeries;
import ch.psi.pshell.plot.Plot;
import ch.psi.pshell.ui.Panel;
import ch.psi.utils.swing.DsvEditor;
import java.awt.event.WindowAdapter;
import java.awt.event.WindowEvent;
import java.io.File;
import java.nio.file.Files;
import javax.swing.DefaultComboBoxModel;

/**
 *
 */
public class DelayScan extends Panel {

    public DelayScan() {
        initComponents();
    }

    double energyCache = 0;
    boolean restart;

    @Override
    public void onStateChange(State state, State former) {
        setEnabled(state == State.Ready);
    }

    @Override
    public void onExecutedFile(String fileName, Object result) {
    }

    boolean otf;

    void stopScan() {
        try {
            getLogger().info("Stopping scan");
            evalAsync("caput('START', 'STOP')");
        } catch (Exception ex) {
            getLogger().log(Level.WARNING, null, ex);
        }
    }

    Path getConfigFile() {
        return Paths.get(getController().getSetup().getConfigPath(), "energy_scan.properties");
    }

    LinePlotBase scanPlot;
    LinePlotSeries scanSeries;

    @Override
    public void setEnabled(boolean value) {
        super.setEnabled(value);
        buttonExecute.setEnabled(value);
        //buttonPlot.setEnabled(value);
        checkParameterControls();
    }

    void checkParameterControls() {
        boolean enabled;
        enabled = isEnabled();
        for (Component c : panelParameters.getComponents()) {
            if (!(c instanceof JLabel)) {
                c.setEnabled(enabled);
            }
        }
                
        //spinnerAlpha.setEnabled(enabled && comboMode.getSelectedItem().equals("LINEAR"));
    }

    double last = 0;

    void run() throws Exception {
        HashMap args = new HashMap();
        args.put("START",(Double) spinnerStart.getValue());
        args.put("DELAY", (Double) spinnerDelay.getValue());
        args.put("END", (Double) spinnerEnd.getValue());
        args.put("FINEDELAY", (Double) spinnerFineDelay.getValue());
        args.put("SIZE", (Double) spinnerSize.getValue());
        args.put("OFFSET1", (Double) spinnerOffset1.getValue());
        args.put("OFFSET2", (Double) spinnerOffset2.getValue());
        args.put("ACQTIME", (Double) spinnerAcqTime.getValue());
        args.put("ENERGIES", jTextField1.getText());
        args.put("RUNTYPE", comboRunType.getSelectedItem().toString());
        args.put("ROUNDS", (Integer) spinnerRounds.getValue());
        args.put("SET_OFFSETS", jCheckBox1.isSelected() ? 1 : 2);
        args.put("ID1", jRadioButton1.isSelected() ? 1 : 2);
        args.put("ID2", jRadioButton2.isSelected() ? 1 : 2);
        args.put("MCP_1", jCheckBox2.isSelected() ? 1 : 2);
        args.put("MCP_2", jCheckBox3.isSelected() ? 1 : 2);
        args.put("Cam_start", jSpinner1.getValue());
        args.put("Cam_end", jSpinner2.getValue());
        args.put("Save_array_data", jCheckBox4.isSelected() ? 1 : 2);

        buttonAbort.setEnabled(true);

        runAsync("DelayScan", args).handle((ok, ex) -> {
            try {
                buttonAbort.setEnabled(false);
                if (ex != null) {
                    throw ex;
                } else {
                }
            } catch (Throwable t) {
                getLogger().log(Level.WARNING, null, ex);
                //showException((Exception)ex);           
            }
            return ok;
        });
    }

    @SuppressWarnings("unchecked")
    // <editor-fold defaultstate="collapsed" desc="Generated Code">//GEN-BEGIN:initComponents
    private void initComponents() {

        buttonGroupPlot = new javax.swing.ButtonGroup();
        buttonGroup1 = new javax.swing.ButtonGroup();
        panelParameters = new javax.swing.JPanel();
        jLabel1 = new javax.swing.JLabel();
        spinnerStart = new javax.swing.JSpinner();
        jLabel2 = new javax.swing.JLabel();
        spinnerDelay = new javax.swing.JSpinner();
        jLabel3 = new javax.swing.JLabel();
        spinnerEnd = new javax.swing.JSpinner();
        jLabel4 = new javax.swing.JLabel();
        spinnerFineDelay = new javax.swing.JSpinner();
        jLabel8 = new javax.swing.JLabel();
        spinnerSize = new javax.swing.JSpinner();
        jLabel13 = new javax.swing.JLabel();
        spinnerOffset2 = new javax.swing.JSpinner();
        jTextField1 = new javax.swing.JTextField();
        jLabel16 = new javax.swing.JLabel();
        jLabel17 = new javax.swing.JLabel();
        jLabel11 = new javax.swing.JLabel();
        comboRunType = new javax.swing.JComboBox();
        spinnerRounds = new javax.swing.JSpinner();
        jLabel5 = new javax.swing.JLabel();
        spinnerOffset1 = new javax.swing.JSpinner();
        spinnerAcqTime = new javax.swing.JSpinner();
        jLabel18 = new javax.swing.JLabel();
        jPanel3 = new javax.swing.JPanel();
        buttonExecute = new javax.swing.JButton();
        buttonAbort = new javax.swing.JButton();
        jCheckBox1 = new javax.swing.JCheckBox();
        jRadioButton2 = new javax.swing.JRadioButton();
        jRadioButton1 = new javax.swing.JRadioButton();
        jRadioButton3 = new javax.swing.JRadioButton();
        jCheckBox2 = new javax.swing.JCheckBox();
        jCheckBox3 = new javax.swing.JCheckBox();
        jLabel6 = new javax.swing.JLabel();
        jLabel7 = new javax.swing.JLabel();
        jSpinner1 = new javax.swing.JSpinner();
        jSpinner2 = new javax.swing.JSpinner();
        jLabel9 = new javax.swing.JLabel();
        jLabel14 = new javax.swing.JLabel();
        jLabel15 = new javax.swing.JLabel();
        jCheckBox4 = new javax.swing.JCheckBox();

        panelParameters.setBorder(javax.swing.BorderFactory.createTitledBorder("Parameters"));

        jLabel1.setHorizontalAlignment(javax.swing.SwingConstants.TRAILING);
        jLabel1.setText("Delay start (ns):");

        spinnerStart.setModel(new javax.swing.SpinnerNumberModel(680.0d, 0.0d, 9999.0d, 1.0d));

        jLabel2.setHorizontalAlignment(javax.swing.SwingConstants.TRAILING);
        jLabel2.setText("LPP delay at t=0");

        spinnerDelay.setModel(new javax.swing.SpinnerNumberModel(750.0d, 0.0d, 9999.0d, 1.0d));

        jLabel3.setHorizontalAlignment(javax.swing.SwingConstants.TRAILING);
        jLabel3.setText("Delay end (ns):");

        spinnerEnd.setModel(new javax.swing.SpinnerNumberModel(2.0d, 0.0d, 60.0d, 1.0d));

        jLabel4.setHorizontalAlignment(javax.swing.SwingConstants.TRAILING);
        jLabel4.setText("LPP fine delay at t=0");

        spinnerFineDelay.setModel(new javax.swing.SpinnerNumberModel(10.0d, 0.0d, 600.0d, 1.0d));

        jLabel8.setHorizontalAlignment(javax.swing.SwingConstants.TRAILING);
        jLabel8.setText("Step size (ns):");

        spinnerSize.setModel(new javax.swing.SpinnerNumberModel(0.0d, -20.0d, 20.0d, 1.0d));

        jLabel13.setHorizontalAlignment(javax.swing.SwingConstants.TRAILING);
        jLabel13.setText("Offset2:");

        spinnerOffset2.setModel(new javax.swing.SpinnerNumberModel(0.0d, -20.0d, 20.0d, 1.0d));

        jTextField1.setText("800, 780");
        jTextField1.addActionListener(new java.awt.event.ActionListener() {
            public void actionPerformed(java.awt.event.ActionEvent evt) {
                jTextField1ActionPerformed(evt);
            }
        });

        jLabel16.setText("Energies:");

        jLabel17.setText("Offset1:");

        jLabel11.setText("Run Type:");

        comboRunType.setModel(new javax.swing.DefaultComboBoxModel(new String[] { "+/-", "+", "-", "LH/LV", "LH", "LV" }));

        spinnerRounds.setModel(new javax.swing.SpinnerNumberModel(1, 1, 10, 1));

        jLabel5.setHorizontalAlignment(javax.swing.SwingConstants.TRAILING);
        jLabel5.setText("Rounds:");

        spinnerOffset1.setModel(new javax.swing.SpinnerNumberModel(0.0d, -20.0d, 20.0d, 1.0d));

        spinnerAcqTime.setModel(new javax.swing.SpinnerNumberModel(0.0d, -20.0d, 20.0d, 1.0d));

        jLabel18.setHorizontalAlignment(javax.swing.SwingConstants.TRAILING);
        jLabel18.setText("Acquisition time (s):");

        javax.swing.GroupLayout panelParametersLayout = new javax.swing.GroupLayout(panelParameters);
        panelParameters.setLayout(panelParametersLayout);
        panelParametersLayout.setHorizontalGroup(
            panelParametersLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
            .addGroup(panelParametersLayout.createSequentialGroup()
                .addContainerGap()
                .addGroup(panelParametersLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
                    .addGroup(panelParametersLayout.createSequentialGroup()
                        .addComponent(jLabel16)
                        .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
                        .addComponent(jTextField1, javax.swing.GroupLayout.PREFERRED_SIZE, 161, javax.swing.GroupLayout.PREFERRED_SIZE))
                    .addGroup(panelParametersLayout.createSequentialGroup()
                        .addGroup(panelParametersLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
                            .addGroup(panelParametersLayout.createSequentialGroup()
                                .addComponent(jLabel17)
                                .addGap(6, 6, 6)
                                .addComponent(spinnerOffset1, javax.swing.GroupLayout.PREFERRED_SIZE, 76, javax.swing.GroupLayout.PREFERRED_SIZE)
                                .addGap(22, 22, 22)
                                .addComponent(jLabel13)
                                .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
                                .addComponent(spinnerOffset2, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE))
                            .addGroup(panelParametersLayout.createSequentialGroup()
                                .addGroup(panelParametersLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
                                    .addComponent(jLabel1)
                                    .addComponent(jLabel3)
                                    .addComponent(jLabel8))
                                .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.UNRELATED)
                                .addGroup(panelParametersLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
                                    .addComponent(spinnerSize, javax.swing.GroupLayout.PREFERRED_SIZE, 80, javax.swing.GroupLayout.PREFERRED_SIZE)
                                    .addComponent(spinnerEnd, javax.swing.GroupLayout.PREFERRED_SIZE, 80, javax.swing.GroupLayout.PREFERRED_SIZE)
                                    .addComponent(spinnerStart, javax.swing.GroupLayout.Alignment.TRAILING, javax.swing.GroupLayout.PREFERRED_SIZE, 80, javax.swing.GroupLayout.PREFERRED_SIZE)))
                            .addComponent(jLabel11)
                            .addGroup(panelParametersLayout.createSequentialGroup()
                                .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED, 6, javax.swing.GroupLayout.PREFERRED_SIZE)
                                .addGap(56, 56, 56)
                                .addComponent(comboRunType, javax.swing.GroupLayout.PREFERRED_SIZE, 105, javax.swing.GroupLayout.PREFERRED_SIZE)))
                        .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
                        .addGroup(panelParametersLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.TRAILING)
                            .addComponent(jLabel4)
                            .addComponent(jLabel2)
                            .addComponent(jLabel18)
                            .addComponent(jLabel5))
                        .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
                        .addGroup(panelParametersLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING, false)
                            .addComponent(spinnerRounds, javax.swing.GroupLayout.Alignment.TRAILING)
                            .addComponent(spinnerAcqTime, javax.swing.GroupLayout.Alignment.TRAILING)
                            .addComponent(spinnerFineDelay, javax.swing.GroupLayout.Alignment.TRAILING)
                            .addComponent(spinnerDelay, javax.swing.GroupLayout.Alignment.TRAILING))))
                .addContainerGap(javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE))
        );

        panelParametersLayout.linkSize(javax.swing.SwingConstants.HORIZONTAL, new java.awt.Component[] {jLabel2, jLabel4});

        panelParametersLayout.linkSize(javax.swing.SwingConstants.HORIZONTAL, new java.awt.Component[] {spinnerOffset2, spinnerRounds});

        panelParametersLayout.setVerticalGroup(
            panelParametersLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
            .addGroup(panelParametersLayout.createSequentialGroup()
                .addGroup(panelParametersLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
                    .addComponent(jLabel1)
                    .addComponent(spinnerStart, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
                    .addComponent(jLabel2)
                    .addComponent(spinnerDelay, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE))
                .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
                .addGroup(panelParametersLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
                    .addComponent(jLabel3)
                    .addComponent(spinnerEnd, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
                    .addComponent(jLabel4)
                    .addComponent(spinnerFineDelay, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE))
                .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
                .addGroup(panelParametersLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
                    .addComponent(jLabel8)
                    .addComponent(spinnerSize)
                    .addComponent(jLabel18)
                    .addComponent(spinnerAcqTime, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE))
                .addGap(30, 30, 30)
                .addGroup(panelParametersLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
                    .addComponent(jLabel16)
                    .addComponent(jTextField1, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE))
                .addGap(18, 18, 18)
                .addGroup(panelParametersLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
                    .addComponent(jLabel17)
                    .addComponent(spinnerOffset1, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
                    .addComponent(jLabel13)
                    .addComponent(spinnerOffset2, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE))
                .addGap(15, 15, 15)
                .addGroup(panelParametersLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
                    .addComponent(jLabel11)
                    .addComponent(comboRunType, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
                    .addComponent(spinnerRounds, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
                    .addComponent(jLabel5)))
        );

        jPanel3.setBorder(javax.swing.BorderFactory.createTitledBorder("Scan Control"));

        buttonExecute.setText("Start");
        buttonExecute.addActionListener(new java.awt.event.ActionListener() {
            public void actionPerformed(java.awt.event.ActionEvent evt) {
                buttonExecuteActionPerformed(evt);
            }
        });

        buttonAbort.setText("Abort");
        buttonAbort.setEnabled(false);
        buttonAbort.addActionListener(new java.awt.event.ActionListener() {
            public void actionPerformed(java.awt.event.ActionEvent evt) {
                buttonAbortActionPerformed(evt);
            }
        });

        jCheckBox1.setText("set offsets");
        jCheckBox1.addActionListener(new java.awt.event.ActionListener() {
            public void actionPerformed(java.awt.event.ActionEvent evt) {
                jCheckBox1ActionPerformed(evt);
            }
        });

        buttonGroup1.add(jRadioButton2);
        jRadioButton2.setText("ID2");

        buttonGroup1.add(jRadioButton1);
        jRadioButton1.setText("ID1");

        buttonGroup1.add(jRadioButton3);
        jRadioButton3.setSelected(true);
        jRadioButton3.setText("ID1+ID2");

        jCheckBox2.setText("MCP signal");
        jCheckBox2.addActionListener(new java.awt.event.ActionListener() {
            public void actionPerformed(java.awt.event.ActionEvent evt) {
                jCheckBox2ActionPerformed(evt);
            }
        });

        jCheckBox3.setText("MCP I_0");

        jLabel6.setText("ID mode");

        jLabel7.setText("Save MCP data");

        jSpinner1.setModel(new javax.swing.SpinnerNumberModel(0, 0, 1000, 1));

        jSpinner2.setModel(new javax.swing.SpinnerNumberModel(0, 0, 1000, 1));

        jLabel9.setText("start");

        jLabel14.setText("end");

        jLabel15.setText("Camshaft position");

        jCheckBox4.setText("Save array data");

        javax.swing.GroupLayout jPanel3Layout = new javax.swing.GroupLayout(jPanel3);
        jPanel3.setLayout(jPanel3Layout);
        jPanel3Layout.setHorizontalGroup(
            jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
            .addGroup(jPanel3Layout.createSequentialGroup()
                .addContainerGap()
                .addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
                    .addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING, false)
                        .addGroup(jPanel3Layout.createSequentialGroup()
                            .addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
                                .addComponent(jRadioButton1)
                                .addComponent(jRadioButton2))
                            .addGap(80, 80, 80)
                            .addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
                                .addComponent(jCheckBox3)
                                .addComponent(jCheckBox2)))
                        .addGroup(jPanel3Layout.createSequentialGroup()
                            .addComponent(jLabel6)
                            .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
                            .addComponent(jLabel7)))
                    .addGroup(jPanel3Layout.createSequentialGroup()
                        .addComponent(jRadioButton3)
                        .addGap(48, 48, 48)
                        .addComponent(jCheckBox4)))
                .addGap(31, 31, 31)
                .addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
                    .addGroup(jPanel3Layout.createSequentialGroup()
                        .addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
                            .addComponent(jLabel9)
                            .addComponent(jLabel14))
                        .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
                        .addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING, false)
                            .addComponent(jSpinner1)
                            .addComponent(jSpinner2))
                        .addGap(18, 18, 18)
                        .addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.CENTER)
                            .addComponent(buttonExecute, javax.swing.GroupLayout.PREFERRED_SIZE, 100, javax.swing.GroupLayout.PREFERRED_SIZE)
                            .addComponent(buttonAbort, javax.swing.GroupLayout.PREFERRED_SIZE, 100, javax.swing.GroupLayout.PREFERRED_SIZE))
                        .addGap(18, 18, 18)
                        .addComponent(jCheckBox1))
                    .addComponent(jLabel15))
                .addContainerGap())
        );
        jPanel3Layout.setVerticalGroup(
            jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
            .addGroup(javax.swing.GroupLayout.Alignment.TRAILING, jPanel3Layout.createSequentialGroup()
                .addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
                    .addGroup(jPanel3Layout.createSequentialGroup()
                        .addContainerGap()
                        .addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
                            .addComponent(jLabel6)
                            .addComponent(jLabel7)
                            .addComponent(jLabel15))
                        .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
                        .addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
                            .addGroup(jPanel3Layout.createSequentialGroup()
                                .addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
                                    .addComponent(buttonExecute)
                                    .addComponent(jCheckBox1)
                                    .addComponent(jRadioButton1)
                                    .addComponent(jCheckBox2))
                                .addGap(16, 16, 16)
                                .addComponent(buttonAbort))
                            .addGroup(jPanel3Layout.createSequentialGroup()
                                .addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
                                    .addComponent(jSpinner1, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
                                    .addComponent(jLabel9))
                                .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
                                .addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
                                    .addComponent(jSpinner2, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
                                    .addComponent(jLabel14)))))
                    .addGroup(jPanel3Layout.createSequentialGroup()
                        .addGap(60, 60, 60)
                        .addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
                            .addComponent(jRadioButton2)
                            .addComponent(jCheckBox3))
                        .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.UNRELATED)
                        .addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
                            .addComponent(jRadioButton3)
                            .addComponent(jCheckBox4))))
                .addContainerGap(13, Short.MAX_VALUE))
        );

        javax.swing.GroupLayout layout = new javax.swing.GroupLayout(this);
        this.setLayout(layout);
        layout.setHorizontalGroup(
            layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
            .addComponent(jPanel3, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
            .addComponent(panelParameters, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
        );
        layout.setVerticalGroup(
            layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
            .addGroup(layout.createSequentialGroup()
                .addComponent(panelParameters, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
                .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED, 111, Short.MAX_VALUE)
                .addComponent(jPanel3, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE))
        );
    }// </editor-fold>//GEN-END:initComponents

    private void buttonExecuteActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_buttonExecuteActionPerformed
        try {
            run();
        } catch (Exception ex) {
            showException(ex);
        }
    }//GEN-LAST:event_buttonExecuteActionPerformed

    private void buttonAbortActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_buttonAbortActionPerformed
        abort();
    }//GEN-LAST:event_buttonAbortActionPerformed

    private void jCheckBox1ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_jCheckBox1ActionPerformed
        // TODO add your handling code here:
    }//GEN-LAST:event_jCheckBox1ActionPerformed

    private void jCheckBox2ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_jCheckBox2ActionPerformed
        // TODO add your handling code here:
    }//GEN-LAST:event_jCheckBox2ActionPerformed

    private void jTextField1ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_jTextField1ActionPerformed
        // TODO add your handling code here:
    }//GEN-LAST:event_jTextField1ActionPerformed

    EditorDialog dlgConfig;
    // Variables declaration - do not modify//GEN-BEGIN:variables
    private javax.swing.JButton buttonAbort;
    private javax.swing.JButton buttonExecute;
    private javax.swing.ButtonGroup buttonGroup1;
    private javax.swing.ButtonGroup buttonGroupPlot;
    private javax.swing.JComboBox comboRunType;
    private javax.swing.JCheckBox jCheckBox1;
    private javax.swing.JCheckBox jCheckBox2;
    private javax.swing.JCheckBox jCheckBox3;
    private javax.swing.JCheckBox jCheckBox4;
    private javax.swing.JLabel jLabel1;
    private javax.swing.JLabel jLabel11;
    private javax.swing.JLabel jLabel13;
    private javax.swing.JLabel jLabel14;
    private javax.swing.JLabel jLabel15;
    private javax.swing.JLabel jLabel16;
    private javax.swing.JLabel jLabel17;
    private javax.swing.JLabel jLabel18;
    private javax.swing.JLabel jLabel2;
    private javax.swing.JLabel jLabel3;
    private javax.swing.JLabel jLabel4;
    private javax.swing.JLabel jLabel5;
    private javax.swing.JLabel jLabel6;
    private javax.swing.JLabel jLabel7;
    private javax.swing.JLabel jLabel8;
    private javax.swing.JLabel jLabel9;
    private javax.swing.JPanel jPanel3;
    private javax.swing.JRadioButton jRadioButton1;
    private javax.swing.JRadioButton jRadioButton2;
    private javax.swing.JRadioButton jRadioButton3;
    private javax.swing.JSpinner jSpinner1;
    private javax.swing.JSpinner jSpinner2;
    private javax.swing.JTextField jTextField1;
    private javax.swing.JPanel panelParameters;
    private javax.swing.JSpinner spinnerAcqTime;
    private javax.swing.JSpinner spinnerDelay;
    private javax.swing.JSpinner spinnerEnd;
    private javax.swing.JSpinner spinnerFineDelay;
    private javax.swing.JSpinner spinnerOffset1;
    private javax.swing.JSpinner spinnerOffset2;
    private javax.swing.JSpinner spinnerRounds;
    private javax.swing.JSpinner spinnerSize;
    private javax.swing.JSpinner spinnerStart;
    // End of variables declaration//GEN-END:variables
}