/*
 * Copyright (c) 2014 Paul Scherrer Institute. All rights reserved.
 */

import java.awt.Component;
import java.nio.file.Path;
import java.nio.file.Paths;
import java.util.HashMap;
import java.util.logging.Level;
import javax.swing.JLabel;
import ch.psi.utils.State;
import ch.psi.utils.swing.Editor.EditorDialog;
import ch.psi.pshell.plot.LinePlotBase;
import ch.psi.pshell.plot.LinePlotSeries;
import ch.psi.pshell.plot.Plot;
import ch.psi.pshell.ui.Panel;
import ch.psi.utils.swing.DsvEditor;
import java.awt.event.WindowAdapter;
import java.awt.event.WindowEvent;
import java.io.File;
import java.nio.file.Files;
import javax.swing.DefaultComboBoxModel;

/**
 *
 */
public class EnergyScan_TBT extends Panel {

    public EnergyScan_TBT() {
        initComponents();
    }

    double energyCache = 0;
    boolean restart;

    @Override
    public void onInitialize(int runCount) {
        super.onInitialize(runCount);
        loadConfig();
    }

    @Override
    public void onStateChange(State state, State former) {
        setEnabled(state == State.Ready);
    }

    @Override
    public void onExecutedFile(String fileName, Object result) {
    }

    boolean otf;

    void stopScan() {
        try {
            getLogger().info("Stopping scan");
            evalAsync("caput('START', 'STOP')");
        } catch (Exception ex) {
            getLogger().log(Level.WARNING, null, ex);
        }
    }

    Path getConfigFile() {
        return Paths.get(getController().getSetup().getConfigPath(), "energy_scan.properties");
    }

    LinePlotBase scanPlot;
    LinePlotSeries scanSeries;

    @Override
    public void setEnabled(boolean value) {
        super.setEnabled(value);
        buttonExecute.setEnabled(value);
        //buttonPlot.setEnabled(value);
        checkParameterControls();
    }

    void checkParameterControls() {
        boolean enabled;
        enabled = isEnabled();
        for (Component c : panelParameters.getComponents()) {
            if (!(c instanceof JLabel)) {
                c.setEnabled(enabled);
            }
        }
        for (Component c : panelSetup.getComponents()) {
            if (!(c instanceof JLabel)) {
                c.setEnabled(enabled);
            }
        }
                
        //spinnerAlpha.setEnabled(enabled && comboMode.getSelectedItem().equals("LINEAR"));
    }

    double last = 0;

    void run() throws Exception {
        HashMap args = new HashMap();
        Double e1 = (Double) spinnerE1.getValue();
        Double e2 = (Double) spinnerE2.getValue();
        args.put("E1", (Double) spinnerE1.getValue());
        args.put("E2", (Double) spinnerE2.getValue());
        args.put("TIME", (Double) spinnerTime.getValue());
        args.put("DELAY", (Double) spinnerDelay.getValue());
        args.put("OFFSET1", (Double) spinnerOffset1.getValue());
        args.put("OFFSET2", (Double) spinnerOffset2.getValue());
        args.put("MAG", (Double) spinnerMag.getValue());
        args.put("RUNTYPE", comboRunType.getSelectedItem().toString());
        args.put("ROUNDS", (Integer) spinnerRounds.getValue());
        args.put("PLOT_TYPE", radioK1.isSelected() ? 1 : 2);
        args.put("SET_OFFSETS", jCheckBox1.isSelected() ? 1 : 2);
        args.put("ID1", jRadioButton1.isSelected() ? 1 : 2);
        args.put("ID2", jRadioButton2.isSelected() ? 1 : 2);
        args.put("MCP_1", jCheckBox2.isSelected() ? 1 : 2);
        args.put("MCP_2", jCheckBox3.isSelected() ? 1 : 2);
        args.put("Cam_start", jSpinner1.getValue());
        args.put("Cam_end", jSpinner2.getValue());
        args.put("Save_array_data", jCheckBox4.isSelected() ? 1 : 2);

        buttonAbort.setEnabled(true);

        runAsync("EnergyScan_TBT", args).handle((ok, ex) -> {
            try {
                buttonAbort.setEnabled(false);
                if (ex != null) {
                    throw ex;
                } else {
                }
            } catch (Throwable t) {
                getLogger().log(Level.WARNING, null, ex);
                //showException((Exception)ex);           
            }
            return ok;
        });

        if (scanPlot != null) {
            scanPlot.getAxis(Plot.AxisId.X).setRange(Math.min(e1, e2), Math.max(e1, e2));
        }
    }

    void loadConfig() {
        DefaultComboBoxModel model = (DefaultComboBoxModel) comboSetup.getModel();
        model.removeAllElements();
        try {
            for (String line : Files.readAllLines(getConfigFile())) {
                if ((line != null) && (!line.trim().isEmpty())) {
                    String[] tokens = line.split("=");
                    if (tokens.length > 0) {
                        model.addElement(tokens[0].trim());
                    }
                }
            }
        } catch (Exception ex) {
        }
    }

    void setElement() throws Exception {
        String selection = comboSetup.getSelectedItem().toString();
        for (String line : Files.readAllLines(getConfigFile())) {
            if ((line != null) && (!line.trim().isEmpty())) {
                String[] tokens = line.split("=");
                if (tokens.length < 2) {
                    throw new Exception("Invalid file format");
                }
                if (tokens[0].equals(selection)) {
                    tokens = tokens[1].trim().split(";");
                    if (tokens.length < 6) {
                        throw new Exception("Invalid file format");
                    }
                    spinnerE1.setValue(Double.valueOf(tokens[0].trim()));
                    spinnerE2.setValue(Double.valueOf(tokens[1].trim()));
                    spinnerTime.setValue(Double.valueOf(tokens[2].trim()));
                    spinnerDelay.setValue(Double.valueOf(tokens[3].trim()));
                    spinnerOffset1.setValue(Double.valueOf(tokens[4].trim()));
                    spinnerOffset2.setValue(Double.valueOf(tokens[5].trim()));
                    break;
                }
            }
        }
    }

    @SuppressWarnings("unchecked")
    // <editor-fold defaultstate="collapsed" desc="Generated Code">//GEN-BEGIN:initComponents
    private void initComponents() {

        buttonGroupPlot = new javax.swing.ButtonGroup();
        buttonGroup1 = new javax.swing.ButtonGroup();
        panelParameters = new javax.swing.JPanel();
        jLabel1 = new javax.swing.JLabel();
        spinnerE1 = new javax.swing.JSpinner();
        jLabel2 = new javax.swing.JLabel();
        spinnerE2 = new javax.swing.JSpinner();
        jLabel3 = new javax.swing.JLabel();
        spinnerTime = new javax.swing.JSpinner();
        jLabel4 = new javax.swing.JLabel();
        spinnerDelay = new javax.swing.JSpinner();
        jLabel8 = new javax.swing.JLabel();
        spinnerOffset1 = new javax.swing.JSpinner();
        jLabel13 = new javax.swing.JLabel();
        spinnerOffset2 = new javax.swing.JSpinner();
        jLabel11 = new javax.swing.JLabel();
        comboRunType = new javax.swing.JComboBox();
        jLabel5 = new javax.swing.JLabel();
        spinnerRounds = new javax.swing.JSpinner();
        jLabel12 = new javax.swing.JLabel();
        radioK1 = new javax.swing.JRadioButton();
        radioK3 = new javax.swing.JRadioButton();
        spinnerMag = new javax.swing.JSpinner();
        jLabel16 = new javax.swing.JLabel();
        jPanel3 = new javax.swing.JPanel();
        buttonExecute = new javax.swing.JButton();
        buttonAbort = new javax.swing.JButton();
        jCheckBox1 = new javax.swing.JCheckBox();
        jRadioButton2 = new javax.swing.JRadioButton();
        jRadioButton1 = new javax.swing.JRadioButton();
        jRadioButton3 = new javax.swing.JRadioButton();
        jCheckBox2 = new javax.swing.JCheckBox();
        jCheckBox3 = new javax.swing.JCheckBox();
        jLabel6 = new javax.swing.JLabel();
        jLabel7 = new javax.swing.JLabel();
        jSpinner1 = new javax.swing.JSpinner();
        jSpinner2 = new javax.swing.JSpinner();
        jLabel9 = new javax.swing.JLabel();
        jLabel14 = new javax.swing.JLabel();
        jLabel15 = new javax.swing.JLabel();
        jCheckBox4 = new javax.swing.JCheckBox();
        panelSetup = new javax.swing.JPanel();
        comboSetup = new javax.swing.JComboBox();
        buttonConfigure = new javax.swing.JButton();
        jLabel10 = new javax.swing.JLabel();

        panelParameters.setBorder(javax.swing.BorderFactory.createTitledBorder("Parameters"));

        jLabel1.setHorizontalAlignment(javax.swing.SwingConstants.TRAILING);
        jLabel1.setText("E start:");
        jLabel1.setToolTipText("");

        spinnerE1.setModel(new javax.swing.SpinnerNumberModel(680.0d, 0.0d, 9999.0d, 1.0d));

        jLabel2.setHorizontalAlignment(javax.swing.SwingConstants.TRAILING);
        jLabel2.setText("E end:");
        jLabel2.setToolTipText("");

        spinnerE2.setModel(new javax.swing.SpinnerNumberModel(750.0d, 0.0d, 9999.0d, 1.0d));

        jLabel3.setHorizontalAlignment(javax.swing.SwingConstants.TRAILING);
        jLabel3.setText("Time(min):");

        spinnerTime.setModel(new javax.swing.SpinnerNumberModel(2.0d, 0.0d, 60.0d, 1.0d));

        jLabel4.setHorizontalAlignment(javax.swing.SwingConstants.TRAILING);
        jLabel4.setText("Delay(s):");

        spinnerDelay.setModel(new javax.swing.SpinnerNumberModel(10.0d, 0.0d, 600.0d, 1.0d));

        jLabel8.setHorizontalAlignment(javax.swing.SwingConstants.TRAILING);
        jLabel8.setText("Offset1:");

        spinnerOffset1.setModel(new javax.swing.SpinnerNumberModel(0.0d, -20.0d, 20.0d, 1.0d));

        jLabel13.setHorizontalAlignment(javax.swing.SwingConstants.TRAILING);
        jLabel13.setText("Offset2:");

        spinnerOffset2.setModel(new javax.swing.SpinnerNumberModel(0.0d, -20.0d, 20.0d, 1.0d));

        jLabel11.setText("Run Type:");

        comboRunType.setModel(new javax.swing.DefaultComboBoxModel(new String[] { "+/-", "+", "-", "LH/LV", "LH", "LV", "+--+/+--+" }));

        jLabel5.setHorizontalAlignment(javax.swing.SwingConstants.TRAILING);
        jLabel5.setText("Nb of repetitions");
        jLabel5.setToolTipText("");

        spinnerRounds.setModel(new javax.swing.SpinnerNumberModel(1, 1, 10, 1));

        jLabel12.setText("Plot Type:");

        buttonGroupPlot.add(radioK1);
        radioK1.setText("K2 / K1");
        radioK1.setMinimumSize(new java.awt.Dimension(100, 22));
        radioK1.addActionListener(new java.awt.event.ActionListener() {
            public void actionPerformed(java.awt.event.ActionEvent evt) {
                radioK1ActionPerformed(evt);
            }
        });

        buttonGroupPlot.add(radioK3);
        radioK3.setText("K2 / K3");

        spinnerMag.setModel(new javax.swing.SpinnerNumberModel(1.0d, -2.0d, 2.0d, 0.1d));

        jLabel16.setText("B(T)");

        javax.swing.GroupLayout panelParametersLayout = new javax.swing.GroupLayout(panelParameters);
        panelParameters.setLayout(panelParametersLayout);
        panelParametersLayout.setHorizontalGroup(
            panelParametersLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
            .addGroup(panelParametersLayout.createSequentialGroup()
                .addContainerGap()
                .addGroup(panelParametersLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
                    .addGroup(panelParametersLayout.createSequentialGroup()
                        .addComponent(jLabel12)
                        .addGap(18, 18, 18)
                        .addComponent(radioK1, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
                        .addGap(18, 18, 18)
                        .addComponent(radioK3, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
                        .addContainerGap(javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE))
                    .addGroup(panelParametersLayout.createSequentialGroup()
                        .addGroup(panelParametersLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
                            .addGroup(panelParametersLayout.createSequentialGroup()
                                .addGroup(panelParametersLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.TRAILING)
                                    .addGroup(panelParametersLayout.createSequentialGroup()
                                        .addComponent(jLabel8)
                                        .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
                                        .addComponent(spinnerOffset1, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE))
                                    .addGroup(panelParametersLayout.createSequentialGroup()
                                        .addGroup(panelParametersLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
                                            .addComponent(jLabel3, javax.swing.GroupLayout.Alignment.TRAILING)
                                            .addComponent(jLabel1, javax.swing.GroupLayout.Alignment.TRAILING))
                                        .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
                                        .addGroup(panelParametersLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
                                            .addComponent(spinnerE1, javax.swing.GroupLayout.Alignment.TRAILING, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
                                            .addComponent(spinnerTime, javax.swing.GroupLayout.Alignment.TRAILING, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE))))
                                .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
                                .addGroup(panelParametersLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.TRAILING)
                                    .addGroup(panelParametersLayout.createSequentialGroup()
                                        .addGroup(panelParametersLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
                                            .addComponent(jLabel4, javax.swing.GroupLayout.Alignment.TRAILING)
                                            .addComponent(jLabel2, javax.swing.GroupLayout.Alignment.TRAILING)
                                            .addComponent(jLabel13, javax.swing.GroupLayout.Alignment.TRAILING))
                                        .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
                                        .addGroup(panelParametersLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
                                            .addComponent(spinnerE2, javax.swing.GroupLayout.Alignment.TRAILING, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
                                            .addComponent(spinnerDelay, javax.swing.GroupLayout.Alignment.TRAILING, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)))
                                    .addComponent(spinnerOffset2, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)))
                            .addGroup(panelParametersLayout.createSequentialGroup()
                                .addComponent(jLabel11)
                                .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.UNRELATED)
                                .addComponent(comboRunType, javax.swing.GroupLayout.PREFERRED_SIZE, 105, javax.swing.GroupLayout.PREFERRED_SIZE)
                                .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
                                .addComponent(jLabel5)
                                .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
                                .addComponent(spinnerRounds, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)))
                        .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
                        .addComponent(jLabel16)
                        .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
                        .addComponent(spinnerMag, javax.swing.GroupLayout.PREFERRED_SIZE, 66, javax.swing.GroupLayout.PREFERRED_SIZE)
                        .addGap(39, 39, 39))))
        );

        panelParametersLayout.linkSize(javax.swing.SwingConstants.HORIZONTAL, new java.awt.Component[] {spinnerE1, spinnerTime});

        panelParametersLayout.linkSize(javax.swing.SwingConstants.HORIZONTAL, new java.awt.Component[] {jLabel2, jLabel4, jLabel8});

        panelParametersLayout.linkSize(javax.swing.SwingConstants.HORIZONTAL, new java.awt.Component[] {spinnerDelay, spinnerE2, spinnerOffset1, spinnerOffset2, spinnerRounds});

        panelParametersLayout.linkSize(javax.swing.SwingConstants.HORIZONTAL, new java.awt.Component[] {radioK1, radioK3});

        panelParametersLayout.setVerticalGroup(
            panelParametersLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
            .addGroup(panelParametersLayout.createSequentialGroup()
                .addGroup(panelParametersLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
                    .addComponent(jLabel1)
                    .addComponent(spinnerE1, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
                    .addComponent(jLabel2)
                    .addComponent(spinnerE2, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
                    .addComponent(spinnerMag, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
                    .addComponent(jLabel16))
                .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
                .addGroup(panelParametersLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
                    .addComponent(jLabel3)
                    .addComponent(spinnerTime, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
                    .addComponent(jLabel4)
                    .addComponent(spinnerDelay, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE))
                .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.UNRELATED)
                .addGroup(panelParametersLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
                    .addComponent(jLabel8)
                    .addComponent(spinnerOffset1)
                    .addComponent(jLabel13)
                    .addComponent(spinnerOffset2, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE))
                .addGap(35, 35, 35)
                .addGroup(panelParametersLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
                    .addComponent(comboRunType, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
                    .addComponent(jLabel11)
                    .addComponent(jLabel5)
                    .addComponent(spinnerRounds, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE))
                .addGap(20, 20, 20)
                .addGroup(panelParametersLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
                    .addComponent(jLabel12)
                    .addComponent(radioK1, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
                    .addComponent(radioK3))
                .addContainerGap())
        );

        jPanel3.setBorder(javax.swing.BorderFactory.createTitledBorder("Scan Control"));

        buttonExecute.setText("Start");
        buttonExecute.addActionListener(new java.awt.event.ActionListener() {
            public void actionPerformed(java.awt.event.ActionEvent evt) {
                buttonExecuteActionPerformed(evt);
            }
        });

        buttonAbort.setText("Abort");
        buttonAbort.setEnabled(false);
        buttonAbort.addActionListener(new java.awt.event.ActionListener() {
            public void actionPerformed(java.awt.event.ActionEvent evt) {
                buttonAbortActionPerformed(evt);
            }
        });

        jCheckBox1.setText("set offsets");
        jCheckBox1.addActionListener(new java.awt.event.ActionListener() {
            public void actionPerformed(java.awt.event.ActionEvent evt) {
                jCheckBox1ActionPerformed(evt);
            }
        });

        buttonGroup1.add(jRadioButton2);
        jRadioButton2.setText("ID2");

        buttonGroup1.add(jRadioButton1);
        jRadioButton1.setText("ID1");

        buttonGroup1.add(jRadioButton3);
        jRadioButton3.setSelected(true);
        jRadioButton3.setText("ID1+ID2");

        jCheckBox2.setText("Signal channel 0 p/n");
        jCheckBox2.addActionListener(new java.awt.event.ActionListener() {
            public void actionPerformed(java.awt.event.ActionEvent evt) {
                jCheckBox2ActionPerformed(evt);
            }
        });

        jCheckBox3.setText("I_0 channel 2 p/n");
        jCheckBox3.setToolTipText("");

        jLabel6.setText("ID mode");

        jLabel7.setText("Data channels");

        jSpinner1.setModel(new javax.swing.SpinnerNumberModel(0, 0, 1000, 1));

        jSpinner2.setModel(new javax.swing.SpinnerNumberModel(0, 0, 1000, 1));

        jLabel9.setText("Signal pos");

        jLabel14.setText("I_0 pos");

        jLabel15.setText("Camshaft position");

        jCheckBox4.setText("Save array data");

        javax.swing.GroupLayout jPanel3Layout = new javax.swing.GroupLayout(jPanel3);
        jPanel3.setLayout(jPanel3Layout);
        jPanel3Layout.setHorizontalGroup(
            jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
            .addGroup(jPanel3Layout.createSequentialGroup()
                .addContainerGap()
                .addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
                    .addGroup(jPanel3Layout.createSequentialGroup()
                        .addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
                            .addComponent(jRadioButton1)
                            .addComponent(jRadioButton2)
                            .addComponent(jLabel6))
                        .addGap(74, 74, 74)
                        .addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
                            .addComponent(jLabel7)
                            .addComponent(jCheckBox3)
                            .addComponent(jCheckBox2)))
                    .addGroup(jPanel3Layout.createSequentialGroup()
                        .addComponent(jRadioButton3)
                        .addGap(48, 48, 48)
                        .addComponent(jCheckBox4)))
                .addGap(31, 31, 31)
                .addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
                    .addGroup(jPanel3Layout.createSequentialGroup()
                        .addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
                            .addComponent(jLabel9)
                            .addComponent(jLabel14))
                        .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
                        .addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING, false)
                            .addComponent(jSpinner1)
                            .addComponent(jSpinner2))
                        .addGap(18, 18, 18)
                        .addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.CENTER)
                            .addComponent(buttonExecute, javax.swing.GroupLayout.PREFERRED_SIZE, 100, javax.swing.GroupLayout.PREFERRED_SIZE)
                            .addComponent(buttonAbort, javax.swing.GroupLayout.PREFERRED_SIZE, 100, javax.swing.GroupLayout.PREFERRED_SIZE))
                        .addGap(18, 18, 18)
                        .addComponent(jCheckBox1))
                    .addComponent(jLabel15))
                .addContainerGap())
        );
        jPanel3Layout.setVerticalGroup(
            jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
            .addGroup(javax.swing.GroupLayout.Alignment.TRAILING, jPanel3Layout.createSequentialGroup()
                .addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
                    .addGroup(jPanel3Layout.createSequentialGroup()
                        .addContainerGap()
                        .addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
                            .addComponent(jLabel6)
                            .addComponent(jLabel7)
                            .addComponent(jLabel15))
                        .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
                        .addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
                            .addGroup(jPanel3Layout.createSequentialGroup()
                                .addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
                                    .addComponent(buttonExecute)
                                    .addComponent(jCheckBox1)
                                    .addComponent(jRadioButton1)
                                    .addComponent(jCheckBox2))
                                .addGap(16, 16, 16)
                                .addComponent(buttonAbort))
                            .addGroup(jPanel3Layout.createSequentialGroup()
                                .addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
                                    .addComponent(jSpinner1, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
                                    .addComponent(jLabel9))
                                .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
                                .addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
                                    .addComponent(jSpinner2, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
                                    .addComponent(jLabel14)))))
                    .addGroup(jPanel3Layout.createSequentialGroup()
                        .addGap(60, 60, 60)
                        .addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
                            .addComponent(jRadioButton2)
                            .addComponent(jCheckBox3))
                        .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.UNRELATED)
                        .addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
                            .addComponent(jRadioButton3)
                            .addComponent(jCheckBox4))))
                .addContainerGap(13, Short.MAX_VALUE))
        );

        panelSetup.setBorder(javax.swing.BorderFactory.createTitledBorder("Setup"));

        comboSetup.addActionListener(new java.awt.event.ActionListener() {
            public void actionPerformed(java.awt.event.ActionEvent evt) {
                comboSetupActionPerformed(evt);
            }
        });

        buttonConfigure.setText("Configure");
        buttonConfigure.addActionListener(new java.awt.event.ActionListener() {
            public void actionPerformed(java.awt.event.ActionEvent evt) {
                buttonConfigureActionPerformed(evt);
            }
        });

        jLabel10.setText("Element:");

        javax.swing.GroupLayout panelSetupLayout = new javax.swing.GroupLayout(panelSetup);
        panelSetup.setLayout(panelSetupLayout);
        panelSetupLayout.setHorizontalGroup(
            panelSetupLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
            .addGroup(panelSetupLayout.createSequentialGroup()
                .addContainerGap()
                .addComponent(jLabel10)
                .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
                .addComponent(comboSetup, javax.swing.GroupLayout.PREFERRED_SIZE, 152, javax.swing.GroupLayout.PREFERRED_SIZE)
                .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
                .addComponent(buttonConfigure)
                .addContainerGap())
        );
        panelSetupLayout.setVerticalGroup(
            panelSetupLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
            .addGroup(panelSetupLayout.createSequentialGroup()
                .addGap(4, 4, 4)
                .addGroup(panelSetupLayout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
                    .addComponent(comboSetup, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
                    .addComponent(jLabel10)
                    .addComponent(buttonConfigure))
                .addContainerGap(javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE))
        );

        javax.swing.GroupLayout layout = new javax.swing.GroupLayout(this);
        this.setLayout(layout);
        layout.setHorizontalGroup(
            layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
            .addComponent(jPanel3, javax.swing.GroupLayout.Alignment.TRAILING, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
            .addComponent(panelParameters, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
            .addComponent(panelSetup, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
        );
        layout.setVerticalGroup(
            layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
            .addGroup(layout.createSequentialGroup()
                .addGap(16, 16, 16)
                .addComponent(panelParameters, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
                .addGap(18, 18, 18)
                .addComponent(panelSetup, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
                .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED, 30, Short.MAX_VALUE)
                .addComponent(jPanel3, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE))
        );
    }// </editor-fold>//GEN-END:initComponents

    private void radioK1ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_radioK1ActionPerformed
        // TODO add your handling code here:
    }//GEN-LAST:event_radioK1ActionPerformed

    private void comboSetupActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_comboSetupActionPerformed
        try {
            if (comboSetup.getSelectedItem() != null) {
                setElement();
            }
        } catch (Exception ex) {
            showException(ex);
        }
    }//GEN-LAST:event_comboSetupActionPerformed

    private void buttonConfigureActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_buttonConfigureActionPerformed
        try {
            //Desktop.getDesktop().open(getConfigFile().toFile());
            if ((dlgConfig == null) || (!dlgConfig.isShowing())) {
                String[] columns = new String[]{"Element", "E1", "E2", "Time", "Delay", "Offset1", "Offset2"};
                Class[] types = new Class[]{String.class, Double.class, Double.class, Double.class, Double.class, Double.class, Double.class};
                DsvEditor editor = new DsvEditor(columns, types, ";");
                dlgConfig = editor.getDialog(getView(), false);
                editor.load(getConfigFile().toString());
                editor.setTitle("Energy Scan Configuration");
                dlgConfig.addWindowListener(new WindowAdapter() {
                    @Override
                    public void windowClosed(WindowEvent e) {
                        if (System.currentTimeMillis() - new File(dlgConfig.getEditor().getFileName()).lastModified() < 5000) {
                            loadConfig();
                        }
                    }
                });
            }
            dlgConfig.setSize(680, 320);
            showWindow(dlgConfig);
        } catch (Exception ex) {
            showException(ex);
        }
    }//GEN-LAST:event_buttonConfigureActionPerformed

    private void jCheckBox2ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_jCheckBox2ActionPerformed
        // TODO add your handling code here:
    }//GEN-LAST:event_jCheckBox2ActionPerformed

    private void jCheckBox1ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_jCheckBox1ActionPerformed
        // TODO add your handling code here:
    }//GEN-LAST:event_jCheckBox1ActionPerformed

    private void buttonAbortActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_buttonAbortActionPerformed
        abort();
    }//GEN-LAST:event_buttonAbortActionPerformed

    private void buttonExecuteActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_buttonExecuteActionPerformed
        try {
            run();
        } catch (Exception ex) {
            showException(ex);
        }
    }//GEN-LAST:event_buttonExecuteActionPerformed

    EditorDialog dlgConfig;
    // Variables declaration - do not modify//GEN-BEGIN:variables
    private javax.swing.JButton buttonAbort;
    private javax.swing.JButton buttonConfigure;
    private javax.swing.JButton buttonExecute;
    private javax.swing.ButtonGroup buttonGroup1;
    private javax.swing.ButtonGroup buttonGroupPlot;
    private javax.swing.JComboBox comboRunType;
    private javax.swing.JComboBox comboSetup;
    private javax.swing.JCheckBox jCheckBox1;
    private javax.swing.JCheckBox jCheckBox2;
    private javax.swing.JCheckBox jCheckBox3;
    private javax.swing.JCheckBox jCheckBox4;
    private javax.swing.JLabel jLabel1;
    private javax.swing.JLabel jLabel10;
    private javax.swing.JLabel jLabel11;
    private javax.swing.JLabel jLabel12;
    private javax.swing.JLabel jLabel13;
    private javax.swing.JLabel jLabel14;
    private javax.swing.JLabel jLabel15;
    private javax.swing.JLabel jLabel16;
    private javax.swing.JLabel jLabel2;
    private javax.swing.JLabel jLabel3;
    private javax.swing.JLabel jLabel4;
    private javax.swing.JLabel jLabel5;
    private javax.swing.JLabel jLabel6;
    private javax.swing.JLabel jLabel7;
    private javax.swing.JLabel jLabel8;
    private javax.swing.JLabel jLabel9;
    private javax.swing.JPanel jPanel3;
    private javax.swing.JRadioButton jRadioButton1;
    private javax.swing.JRadioButton jRadioButton2;
    private javax.swing.JRadioButton jRadioButton3;
    private javax.swing.JSpinner jSpinner1;
    private javax.swing.JSpinner jSpinner2;
    private javax.swing.JPanel panelParameters;
    private javax.swing.JPanel panelSetup;
    private javax.swing.JRadioButton radioK1;
    private javax.swing.JRadioButton radioK3;
    private javax.swing.JSpinner spinnerDelay;
    private javax.swing.JSpinner spinnerE1;
    private javax.swing.JSpinner spinnerE2;
    private javax.swing.JSpinner spinnerMag;
    private javax.swing.JSpinner spinnerOffset1;
    private javax.swing.JSpinner spinnerOffset2;
    private javax.swing.JSpinner spinnerRounds;
    private javax.swing.JSpinner spinnerTime;
    // End of variables declaration//GEN-END:variables
}