script/test/Test_Autofocus_Armin.py

@@ -0,0 +1,63 @@
+#wold be nice to print relative changes of the parameters
+RANGE_OBJ = 1.0
+STEP_OBJ = 0.1
+RANGE_STIG = 10.0
+STEP_STIG = 1.0
+UPDATE_POSITION = True
+AVERAGE = 1
+width, height = eiger.getImageSize()
+#ROI = Rectangle(width/3, height/3, width/3, height/3,)
+#ROI = Rectangle(0, 0, width, height,)
+ROI = Rectangle(200,100,256,256)#(x0,y0,delta_x(2**n), delta_y(2**n))
+
+initial_state = objective.read(),obj_stig_a.read(),obj_stig_b.read()    
+print "Initial state:" , initial_state
+
+def apply_pos(pos):
+    objective.write(pos[0])
+    obj_stig_a.write(pos[1])
+    obj_stig_b.write(pos[2])
+
+def show_roi():
+    global ROI
+    pn=show_panel(image)
+    ov=Overlays.Rect(Pen(Color.BLUE), Point(ROI.x,ROI.y),Dimension(ROI.width,ROI.height))
+    pn.clearOverlays()
+    pn.addOverlay(ov)
+show_roi()
+    
+MAX_SHIFT = 20
+former_data = image.data
+def update_roi():
+    global former_data, ROI
+    cur_data = image.data
+    calc_roi = Roi(ROI.x,ROI.y,ROI.width, ROI.height)
+    try:
+        xoff, yoff, error, diffphase, _ = calculate_shift(former_data,cur_data, calc_roi)
+        print "Calculated shift: ", xoff, yoff, error, diffphase
+        if (abs(xoff) <= MAX_SHIFT) and (abs(yoff) <= MAX_SHIFT):
+            x,y=int(ROI.x - xoff), int(ROI.y - yoff)
+            print "Updating ROI location to ", x, y
+            ROI.setLocation(x,y)
+            show_roi()
+    except:
+        print "Error calculating shift: " + str(sys.exc_info()[1])
+    former_data = cur_data
+    
+
+r=scan_focus(objective, RANGE_OBJ, STEP_OBJ, roi = ROI, average = AVERAGE, update_position = UPDATE_POSITION)
+update_roi()
+# r=scan_focus(obj_stig_a, RANGE_STIG, STEP_STIG, roi = ROI, average = AVERAGE, update_position = UPDATE_POSITION)
+# update_roi()
+# r=scan_focus(obj_stig_b, RANGE_STIG, STEP_STIG, roi = ROI, average = AVERAGE, update_position = UPDATE_POSITION)
+# update_roi()
+# r=scan_focus(objective, RANGE_OBJ, STEP_OBJ, roi = ROI, average = AVERAGE, update_position = UPDATE_POSITION)
+# update_roi()
+# r=scan_focus(obj_stig_a, RANGE_STIG, STEP_STIG, roi = ROI, average = AVERAGE, update_position = UPDATE_POSITION)
+# update_roi()
+# r=scan_focus(obj_stig_b, RANGE_STIG, STEP_STIG, roi = ROI, average = AVERAGE, update_position = UPDATE_POSITION)
+# update_roi()
+# r=scan_focus(objective, RANGE_OBJ, STEP_OBJ, roi = ROI, average = AVERAGE, update_position = UPDATE_POSITION)
+
+final_state = objective.read(),obj_stig_a.read(),obj_stig_b.read()    
+print "Final state:" , final_state

script/test/test-valerie.py

@@ -0,0 +1,8 @@
+
+##Nickel L edge
+#nr_loops=2
+#for i in range(nr_loops)
+caput('X11MA-KEI10:RANGE', 6)
+caput('X11MA-KEI11:RANGE', 8)
+caput('X11MA-KEI12:RANGE', 9)
+otf2(start=845, end=885, time=2, delay=10, mode='LINEAR', alpha = 0.0, offset=0.0, name='test_Ni')

script/test/test_TFY.py

@@ -0,0 +1 @@
+otf2(start=705, end=715, time=2, delay=10, mode='LINEAR', alpha=0.0, offset=-1.0, name='TFY_test2')

script/test/test_highE.py

@@ -0,0 +1 @@
+otf2(start=1067, end=1070, time=1, delay=2, mode='LINEAR', alpha=0.0, offset=-1.0, name='test_highE')

script/test/test_speed.py

@@ -0,0 +1 @@
+otf2(start=680, end=900, time=1, delay=1, mode='LINEAR', alpha = 0.0, offset=-1.2, name='AS31_Survey')