Delete

.gitignore

@@ -1,9 +1,14 @@
-/data
+/*
-/sessions
+!/script
-/context
+!/plugins
-/log
+!/devices
-/plugins
+!/config
-/extensions
-script/cachedir
 script/Lib
-script/*.class
+script/**/cachedir
+script/**/*.class
+script/**/*.pyc
+script/**/*.*~
+plugins/*.class
+plugins/**/*.*~
+config/**/*.*~
+devices/**/*.*~

config/config.properties

@@ -1,19 +1,28 @@
-#Fri Mar 27 10:38:34 CET 2015
+#Tue Sep 01 09:37:24 CEST 2015
-dataFile={data}/{year}_{month}/{date}/{date}_{time}_{context}
+autoSaveScanData=true
+createSessionFiles=false
 dataFilesCreation=true
+dataPath={data}/{year}_{month}/{date}/{date}_{time}_{exec}
+dataProvider=default
+dataScanFlushRecords=false
+dataScanStrategy=default
 devicePoolFile={config}/devices.properties
 deviceUpdateStrategyFile={config}/update.properties
 imageSourcesFile={config}/imaging.properties
 logDaysToLive=-1
 logLevel=Fine
 logLevelConsole=Off
+logPath={logs}/{date}_{time}
 scriptType=py
-serverEnabled=false
+serverEnabled=true
-serverPort=8080
+serverPort=8085
 simulation=false
 tasksFile={config}/tasks.properties
 terminalEnabled=false
 terminalPort=3579
+userAuthenticator=
+userManagement=false
 versionTrackingEnabled=true
-versionTrackingLogin=
+versionTrackingLogin={config}/agkey
-versionTrackingRemote=
+versionTrackingManual=false
+versionTrackingRemote=ssh\://git@github.psi.ch\:7999/psd/x10sa.git

config/config.properties~

@@ -0,0 +1,27 @@
+#Wed Jul 29 14:45:52 CEST 2015
+autoSaveScanData=true
+createSessionFiles=false
+dataFile={data}/{year}_{month}/{date}/{date}_{time}_{context}
+dataFilesCreation=true
+dataPath={data}/{year}_{month}/{date}/{date}_{time}_{context}
+dataProvider=default
+dataScanFlushRecords=false
+dataScanStrategy=default
+devicePoolFile={config}/devices.properties
+deviceUpdateStrategyFile={config}/update.properties
+imageSourcesFile={config}/imaging.properties
+logDaysToLive=-1
+logLevel=Fine
+logLevelConsole=Off
+scriptType=py
+serverEnabled=true
+serverPort=8085
+simulation=false
+tasksFile={config}/tasks.properties
+terminalEnabled=false
+terminalPort=3579
+userAuthenticator=
+userManagement=false
+versionTrackingEnabled=true
+versionTrackingLogin={config}/agkey
+versionTrackingRemote=ssh\://git@github.psi.ch\:7999/psd/x10sa.git

config/devices.properties

@@ -0,0 +1,33 @@
+diode=ch.psi.pshell.epics.ChannelDouble|X10SA-ES-KBOX_K:READOUT 6|Read||true
+$shutter=ch.psi.pshell.epics.ChannelInteger|X10SA-ES-PH1:SET|||true
+omega=ch.psi.pshell.epics.Positioner|X10SA-ES-DF1:OMEGA-VAL X10SA-ES-DF1:OMEGA-RBV|||true
+x=ch.psi.pshell.epics.Positioner|X10SA-ES-DF1:GMX-VAL X10SA-ES-DF1:GMX-RBV|||true
+cy=ch.psi.pshell.epics.Motor|X10SA-ES-DFS:TRY1|||true
+cz=ch.psi.pshell.epics.Motor|X10SA-ES-DFS:TRZ1|||true
+apertureX=ch.psi.pshell.epics.Motor|X10SA-ES-MIC:TRX1|||true
+apertureY=ch.psi.pshell.epics.Motor|X10SA-ES-MIC:TRY1|||true
+beamstopX=ch.psi.pshell.epics.Motor|X10SA-ES-BS:TRX1|||true
+beamstopY=ch.psi.pshell.epics.Motor|X10SA-ES-BS:TRY1|||true
+beamstopZ=ch.psi.pshell.epics.Motor|X10SA-ES-BS:TRZ1|||true
+collimatorX=ch.psi.pshell.epics.Motor|X10SA-ES-MIC:TRX2|||true
+collimatorY=ch.psi.pshell.epics.Motor|X10SA-ES-MIC:TRY2|||true
+scintillatorY=ch.psi.pshell.epics.Motor|X10SA-ES-MIC:TRY3|||true
+scintillatorZ=ch.psi.pshell.epics.Positioner|X10SA-ES-SCINTI:SET-FOCUS X10SA-ES-SCINTI:GET-FOCUS|||true
+detectorZ=ch.psi.pshell.epics.Motor|X10SA-ES-D:TRZ1|||true
+detectorY=ch.psi.pshell.epics.Motor|X10SA-ES-D:TRY1|||true
+#apertureTable=ch.psi.pshell.device.MotorGroupBase|apertureX apertureY|||
+beamstopTable=ch.psi.pshell.device.MotorGroupBase|beamstopX beamstopY beamstopZ|||
+#collimatorTable=ch.psi.pshell.device.MotorGroupBase|collimatorX collimatorY|||
+collimator=ch.psi.pshell.device.MotorGroupDiscretePositioner|collimatorX collimatorY|||
+aperture=ch.psi.pshell.device.MotorGroupDiscretePositioner|apertureX apertureY|||
+scintillator=ch.psi.pshell.device.MotorGroupDiscretePositioner|scintillatorY|||
+slit1H=ch.psi.pshell.epics.Slit|X10SA-OP-SH1:TRX2 X10SA-OP-SH1:TRX1|||true
+slit1V=ch.psi.pshell.epics.Slit|X10SA-OP-SV1:TRY1 X10SA-OP-SV1:TRY2|||true
+slit2H=ch.psi.pshell.epics.Slit|X10SA-OP-SH2:TRX2 X10SA-OP-SH2:TRX1|||true
+slit2V=ch.psi.pshell.epics.Slit|X10SA-OP-SV2:TRY1 X10SA-OP-SV2:TRY2|||true
+lamp=ch.psi.pshell.epics.DiscretePositioner||||true
+backlight=ch.psi.pshell.epics.ProcessVariable|X10SA-ES-KOI:SET-LIGHT|||
+frontlight=ch.psi.pshell.epics.ProcessVariable|X10SA-ES-FL1:SET-LIGHT|||
+video=ch.psi.pshell.imaging.MjpegSource|http://x10sa-videoserver-1/axis-cgi/mjpg/video.cgi||-1000|
+mic-low=ch.psi.pshell.imaging.MjpegSource|http://x10sa-fw-1.psi.ch:8090/GH-13.mjpg||-250|
+mic-high=ch.psi.pshell.imaging.MjpegSource|http://x10sa-fw-1.psi.ch:8090/GH-12.mjpg||-250|

config/devices.properties~

@@ -0,0 +1,33 @@
+diode=ch.psi.pshell.epics.ChannelDouble|X10SA-ES-KBOX_K:READOUT 6|Read||
+$shutter=ch.psi.pshell.epics.ChannelInteger|X10SA-ES-PH1:SET|||
+omega=ch.psi.pshell.epics.Positionable|X10SA-ES-DF1:OMEGA-VAL X10SA-ES-DF1:OMEGA-RBV|||
+x=ch.psi.pshell.epics.Positionable|X10SA-ES-DF1:GMX-VAL X10SA-ES-DF1:GMX-RBV|||
+cy=ch.psi.pshell.epics.Motor|X10SA-ES-DFS:TRY1|||
+cz=ch.psi.pshell.epics.Motor|X10SA-ES-DFS:TRZ1|||
+apertureX=ch.psi.pshell.epics.Motor|X10SA-ES-MIC:TRX1|||
+apertureY=ch.psi.pshell.epics.Motor|X10SA-ES-MIC:TRY1|||
+beamstopX=ch.psi.pshell.epics.Motor|X10SA-ES-BS:TRX1|||
+beamstopY=ch.psi.pshell.epics.Motor|X10SA-ES-BS:TRY1|||
+beamstopZ=ch.psi.pshell.epics.Motor|X10SA-ES-BS:TRZ1|||
+collimatorX=ch.psi.pshell.epics.Motor|X10SA-ES-MIC:TRX2|||
+collimatorY=ch.psi.pshell.epics.Motor|X10SA-ES-MIC:TRY2|||
+scintillatorY=ch.psi.pshell.epics.Motor|X10SA-ES-MIC:TRY3|||
+scintillatorZ=ch.psi.pshell.epics.Positionable|X10SA-ES-SCINTI:SET-FOCUS X10SA-ES-SCINTI:GET-FOCUS|||
+detectorZ=ch.psi.pshell.epics.Motor|X10SA-ES-D:TRZ1|||
+detectorY=ch.psi.pshell.epics.Motor|X10SA-ES-D:TRY1|||
+#apertureTable=ch.psi.pshell.device.MotorGroupBase|apertureX apertureY|||
+beamstopTable=ch.psi.pshell.device.MotorGroupBase|beamstopX beamstopY beamstopZ|||
+#collimatorTable=ch.psi.pshell.device.MotorGroupBase|collimatorX collimatorY|||
+collimator=ch.psi.pshell.device.MotorGroupDiscretePositioner|collimatorX collimatorY|||
+aperture=ch.psi.pshell.device.MotorGroupDiscretePositioner|apertureX apertureY|||
+scintillator=ch.psi.pshell.device.MotorGroupDiscretePositioner|scintillatorY|||
+slit1H=ch.psi.pshell.epics.Slit|X10SA-OP-SH1:TRX2 X10SA-OP-SH1:TRX1|||
+slit1V=ch.psi.pshell.epics.Slit|X10SA-OP-SV1:TRY1 X10SA-OP-SV1:TRY2|||
+slit2H=ch.psi.pshell.epics.Slit|X10SA-OP-SH2:TRX2 X10SA-OP-SH2:TRX1|||
+slit2V=ch.psi.pshell.epics.Slit|X10SA-OP-SV2:TRY1 X10SA-OP-SV2:TRY2|||
+lamp=ch.psi.pshell.epics.DiscretePositioner||||
+backlight=ch.psi.pshell.epics.ProcessVariable|X10SA-ES-KOI:SET-LIGHT|||
+frontlight=ch.psi.pshell.epics.ProcessVariable|X10SA-ES-FL1:SET-LIGHT|||
+video=ch.psi.pshell.imaging.MjpegSource http://x10sa-videoserver-1/axis-cgi/mjpg/video.cgi
+mic-low=ch.psi.pshell.imaging.MjpegSource http://x10sa-fw-1.psi.ch:8090/GH-13.mjpg
+mic-high=ch.psi.pshell.imaging.MjpegSource http://x10sa-fw-1.psi.ch:8090/GH-12.mjpg

config/jcae.properties

@@ -0,0 +1,7 @@
+ch.psi.jcae.ContextFactory.maxArrayBytes=10000000
+
+ch.psi.jcae.ChannelFactory.timeout=2000
+ch.psi.jcae.ChannelFactory.retries=2
+ch.psi.jcae.ChannelBeanFactory.timeout=10000
+ch.psi.jcae.ChannelBeanFactory.waitTimeout=3600000
+ch.psi.jcae.ChannelBeanFactory.retries=2

config/plugins.properties

@@ -0,0 +1 @@
+Microscope.java=enabled

config/setup.properties

@@ -0,0 +1,19 @@
+#Thu Sep 24 10:13:26 CEST 2015
+configFile={config}/config.properties
+configFileDevices={config}/devices.properties
+configFileImageSources={config}/imaging.properties
+configFilePlugins={config}/plugins.properties
+configFileTasks={config}/tasks.properties
+configFileUpdateStrategy={config}/update.properties
+configPath={home}/config
+contextPath={home}/context
+dataPath={home}/data
+devicesPath={home}/devices
+extensionsPath={home}/extensions
+libraryPath={script}; {script}/Lib
+logPath={home}/log
+pluginsPath={home}/plugins
+scriptPath={home}/script
+scriptType=py
+sessionsPath={home}/sessions
+wwwPath={home}/www

devices/aperture.properties

@@ -0,0 +1,12 @@
+#Tue Sep 01 10:46:53 CEST 2015
+accessType=ReadWrite
+motor1=0.6016|0.6153|0.5168|0.5599
+motor2=-133.7286|2.758|-1.7844|0.4822
+motor3=null
+motor4=null
+motor5=null
+motor6=null
+motor7=null
+motor8=null
+positions=Park|10um|30um|150um
+precision=1

devices/apertureX.properties

@@ -0,0 +1,15 @@
+#Tue Aug 18 11:08:03 CEST 2015
+accessType=ReadWrite
+defaultSpeed=0.5606127886323268
+estbilizationDelay=0
+hasEnable=false
+homingType=None
+maxSpeed=NaN
+maxValue=3.7560000000000002
+minSpeed=0.1
+minValue=-1.244
+offset=0.0
+precision=5
+resolution=0.001
+scale=1.0
+unit=mm

devices/apertureY.properties

@@ -0,0 +1,15 @@
+#Tue Aug 18 11:07:45 CEST 2015
+accessType=ReadWrite
+defaultSpeed=25.0
+estbilizationDelay=0
+hasEnable=false
+homingType=None
+maxSpeed=NaN
+maxValue=3.1000018310546977
+minSpeed=0.1
+minValue=-136.4999999809265
+offset=0.0
+precision=5
+resolution=0.005
+scale=1.0
+unit=mm

devices/backlight.properties

@@ -0,0 +1,9 @@
+#Tue Aug 25 16:05:04 CEST 2015
+accessType=ReadWrite
+maxValue=4.0
+minValue=0.0
+offset=0.0
+precision=2
+resolution=NaN
+scale=1.0
+unit=V

devices/beamstopX.properties

@@ -0,0 +1,15 @@
+#Tue Aug 18 11:23:51 CEST 2015
+accessType=ReadWrite
+defaultSpeed=2.0
+estbilizationDelay=0
+hasEnable=false
+homingType=None
+maxSpeed=NaN
+maxValue=6.9611794542536
+minSpeed=0.1
+minValue=-9.0388205457464
+offset=0.0
+precision=3
+resolution=0.001
+scale=1.0
+unit=mm

devices/beamstopY.properties

@@ -0,0 +1,15 @@
+#Tue Aug 18 11:23:34 CEST 2015
+accessType=ReadWrite
+defaultSpeed=2.0
+estbilizationDelay=0
+hasEnable=false
+homingType=None
+maxSpeed=NaN
+maxValue=7.82852
+minSpeed=0.1
+minValue=-8.17148
+offset=0.0
+precision=3
+resolution=0.001
+scale=1.0
+unit=mm

devices/beamstopZ.properties

@@ -0,0 +1,15 @@
+#Tue Aug 18 11:24:52 CEST 2015
+accessType=ReadWrite
+defaultSpeed=26.0
+estbilizationDelay=0
+hasEnable=false
+homingType=None
+maxSpeed=NaN
+maxValue=132.0
+minSpeed=1.0
+minValue=-2.0
+offset=0.0
+precision=3
+resolution=0.05
+scale=1.0
+unit=mm

devices/collimator.properties

@@ -0,0 +1,12 @@
+#Tue Aug 18 14:06:07 CEST 2015
+accessType=ReadWrite
+motor1=NaN|NaN|0.3488
+motor2=-134.0|-20.0|1.1908
+motor3=null
+motor4=null
+motor5=null
+motor6=null
+motor7=null
+motor8=null
+positions=Park|Ready|In
+precision=1

devices/collimatorX.properties

@@ -0,0 +1,15 @@
+#Tue Aug 18 11:29:13 CEST 2015
+accessType=ReadWrite
+defaultSpeed=1.0
+estbilizationDelay=0
+hasEnable=false
+homingType=None
+maxSpeed=NaN
+maxValue=4.5
+minSpeed=0.1
+minValue=-1.5
+offset=0.0
+precision=4
+resolution=5.0E-4
+scale=1.0
+unit=mm

devices/collimatorY.properties

@@ -0,0 +1,15 @@
+#Tue Aug 18 11:29:03 CEST 2015
+accessType=ReadWrite
+defaultSpeed=25.0
+estbilizationDelay=150
+hasEnable=false
+homingType=None
+maxSpeed=NaN
+maxValue=2.0999984741210938
+minSpeed=0.1
+minValue=-135.0
+offset=0.0
+precision=4
+resolution=5.0E-4
+scale=1.0
+unit=mm

devices/cy.properties

@@ -0,0 +1,15 @@
+#Fri Nov 06 17:43:20 CET 2015
+accessType=ReadWrite
+defaultSpeed=5.0
+estbilizationDelay=0
+hasEnable=false
+homingType=None
+maxSpeed=NaN
+maxValue=2.0
+minSpeed=0.1
+minValue=-2.0
+offset=0.0
+precision=5
+resolution=1.0E-4
+scale=1.0
+unit=mm

devices/cz.properties

@@ -0,0 +1,15 @@
+#Fri Nov 06 17:43:41 CET 2015
+accessType=ReadWrite
+defaultSpeed=5.0
+estbilizationDelay=0
+hasEnable=false
+homingType=None
+maxSpeed=NaN
+maxValue=2.0
+minSpeed=0.1
+minValue=-2.0
+offset=0.0
+precision=5
+resolution=1.0E-4
+scale=1.0
+unit=mm

devices/detectorY.properties

@@ -0,0 +1,15 @@
+#Tue Aug 18 17:29:22 CEST 2015
+accessType=ReadWrite
+defaultSpeed=6.25
+estbilizationDelay=0
+hasEnable=false
+homingType=None
+maxSpeed=NaN
+maxValue=384.0
+minSpeed=1.25
+minValue=-2.0
+offset=0.0
+precision=3
+resolution=0.01
+scale=1.0
+unit=mm

devices/detectorZ.properties

@@ -0,0 +1,15 @@
+#Tue Aug 18 17:29:30 CEST 2015
+accessType=ReadWrite
+defaultSpeed=40.0
+estbilizationDelay=0
+hasEnable=false
+homingType=None
+maxSpeed=NaN
+maxValue=1206.0
+minSpeed=0.8
+minValue=165.9
+offset=0.0
+precision=3
+resolution=0.01
+scale=1.0
+unit=mm

devices/frontlight.properties

@@ -0,0 +1,9 @@
+#Tue Aug 25 16:05:05 CEST 2015
+accessType=ReadWrite
+maxValue=10.0
+minValue=-10.0
+offset=0.0
+precision=2
+resolution=NaN
+scale=1.0
+unit=V

devices/lamp.properties

@@ -0,0 +1,8 @@
+#Tue Aug 18 16:01:38 CEST 2015
+accessType=ReadWrite
+position_pvs=X10SA-ES-KOI\:SET-POS|X10SA-ES-KOI\:SET-POS
+positions=Park|Measure
+precision=-1
+readback_pv=X10SA-ES-KOI\:GET-POS
+setpoint_pv=X10SA-ES-KOI\:SET-POS
+stop_pv=null

devices/mic-high.properties

@@ -0,0 +1,11 @@
+#Wed Nov 11 14:13:36 CET 2015
+flipHorizontally=false
+flipVertically=true
+grayscale=false
+invert=false
+pollingBackground=false
+pollingInterval=250
+rescaleFactor=1.0
+rescaleOffset=0.0
+rotation=0.0
+scale=1.0

devices/mic-low.properties

@@ -0,0 +1,11 @@
+#Wed Nov 11 14:13:36 CET 2015
+flipHorizontally=false
+flipVertically=true
+grayscale=false
+invert=false
+pollingBackground=false
+pollingInterval=250
+rescaleFactor=1.0
+rescaleOffset=0.0
+rotation=0.0
+scale=1.0

devices/mic.properties

@@ -0,0 +1,11 @@
+#Fri Oct 30 09:32:08 CET 2015
+flipHorizontally=false
+flipVertically=false
+grayscale=false
+invert=false
+pollingBackground=false
+pollingInterval=200
+rescaleFactor=1.0
+rescaleOffset=0.0
+rotation=0.0
+scale=1.0

devices/omega.properties

@@ -0,0 +1,9 @@
+#Fri Nov 06 15:37:43 CET 2015
+accessType=ReadWrite
+maxValue=10000.0
+minValue=-10000.0
+offset=0.0
+precision=3
+resolution=NaN
+scale=1.0
+unit=Deg

devices/scintillator.properties

@@ -0,0 +1,15 @@
+#Tue Aug 18 17:38:23 CEST 2015
+accessType=ReadWrite
+motor1=-132.7|-20.0|0.0|4.5
+motor2=null
+motor3=null
+motor4=null
+motor5=null
+motor6=null
+motor7=null
+motor8=null
+position_pvs=null
+positions=Park|Ready|Scintillator|Diode
+precision=-1
+readback_pv=null
+stop_pv=null

devices/scintillatorY.properties

@@ -0,0 +1,15 @@
+#Tue Aug 18 11:01:40 CEST 2015
+accessType=ReadWrite
+defaultSpeed=25.0
+estbilizationDelay=0
+hasEnable=false
+homingType=None
+maxSpeed=NaN
+maxValue=5.100003051757824
+minSpeed=0.1
+minValue=-134.49999995231627
+offset=0.0
+precision=5
+resolution=5.0E-4
+scale=1.0
+unit=mm

devices/scintillatorZ.properties

@@ -0,0 +1,9 @@
+#Tue Aug 18 17:29:43 CEST 2015
+accessType=ReadWrite
+maxValue=10.0
+minValue=-10.0
+offset=0.0
+precision=4
+resolution=5.0
+scale=1.0
+unit=V

devices/slit1H neg blade.properties

@@ -0,0 +1,15 @@
+#Tue Aug 18 14:30:06 CEST 2015
+accessType=ReadWrite
+defaultSpeed=1.5
+estbilizationDelay=0
+hasEnable=false
+homingType=None
+maxSpeed=NaN
+maxValue=6.0
+minSpeed=0.5
+minValue=-6.0
+offset=0.0
+precision=5
+resolution=0.00125
+scale=1.0
+unit=mm

devices/slit1H pos blade.properties

@@ -0,0 +1,15 @@
+#Tue Aug 18 14:32:17 CEST 2015
+accessType=ReadWrite
+defaultSpeed=1.5
+estbilizationDelay=0
+hasEnable=false
+homingType=None
+maxSpeed=NaN
+maxValue=6.0
+minSpeed=0.5
+minValue=-6.0
+offset=0.0
+precision=5
+resolution=0.00125
+scale=1.0
+unit=mm

devices/slit1V neg blade.properties

@@ -0,0 +1,15 @@
+#Tue Aug 18 14:32:31 CEST 2015
+accessType=ReadWrite
+defaultSpeed=1.5
+estbilizationDelay=0
+hasEnable=false
+homingType=None
+maxSpeed=NaN
+maxValue=6.0
+minSpeed=0.5
+minValue=-6.0
+offset=0.0
+precision=5
+resolution=0.00125
+scale=1.0
+unit=mm

devices/slit1V pos blade.properties

@@ -0,0 +1,15 @@
+#Tue Aug 18 14:32:23 CEST 2015
+accessType=ReadWrite
+defaultSpeed=1.5
+estbilizationDelay=0
+hasEnable=false
+homingType=None
+maxSpeed=NaN
+maxValue=6.0
+minSpeed=0.5
+minValue=-6.0
+offset=0.0
+precision=5
+resolution=0.00125
+scale=1.0
+unit=mm

devices/slit2H neg blade.properties

@@ -0,0 +1,15 @@
+#Tue Aug 18 14:32:48 CEST 2015
+accessType=ReadWrite
+defaultSpeed=5.0
+estbilizationDelay=0
+hasEnable=false
+homingType=None
+maxSpeed=NaN
+maxValue=10.0
+minSpeed=0.5
+minValue=-10.0
+offset=0.0
+precision=5
+resolution=0.0025
+scale=1.0
+unit=mm

devices/slit2H pos blade.properties

@@ -0,0 +1,15 @@
+#Tue Aug 18 14:32:44 CEST 2015
+accessType=ReadWrite
+defaultSpeed=5.0
+estbilizationDelay=0
+hasEnable=false
+homingType=None
+maxSpeed=NaN
+maxValue=10.0
+minSpeed=0.5
+minValue=-10.0
+offset=0.0
+precision=5
+resolution=0.0025
+scale=1.0
+unit=mm

devices/slit2V neg blade.properties

@@ -0,0 +1,15 @@
+#Tue Aug 18 14:32:34 CEST 2015
+accessType=ReadWrite
+defaultSpeed=5.0
+estbilizationDelay=0
+hasEnable=false
+homingType=None
+maxSpeed=NaN
+maxValue=10.0
+minSpeed=0.5
+minValue=-10.0
+offset=0.0
+precision=5
+resolution=0.0025
+scale=1.0
+unit=mm

devices/slit2V pos blade.properties

@@ -0,0 +1,15 @@
+#Tue Aug 18 14:32:38 CEST 2015
+accessType=ReadWrite
+defaultSpeed=5.0
+estbilizationDelay=0
+hasEnable=false
+homingType=None
+maxSpeed=NaN
+maxValue=10.0
+minSpeed=0.5
+minValue=-10.0
+offset=0.0
+precision=5
+resolution=0.0025
+scale=1.0
+unit=mm

devices/test.properties

@@ -0,0 +1,12 @@
+#Tue Aug 18 18:06:23 CEST 2015
+accessType=ReadWrite
+motor1=0.6016|0.6016|0.5089|0.5511
+motor2=-133.7286|2.7588|-1.7617|0.5066
+motor3=null
+motor4=null
+motor5=null
+motor6=null
+motor7=null
+motor8=null
+positions=Park|10um|30um|150um
+precision=-1

devices/video.properties

@@ -0,0 +1,11 @@
+#Fri May 22 16:26:46 CEST 2015
+flipHorizontally=false
+flipVertically=false
+grayscale=false
+invert=false
+pollingBackground=false
+pollingInterval=1000
+rescaleFactor=1.0
+rescaleOffset=0.0
+rotation=0.0
+scale=1.0

devices/x.properties

@@ -0,0 +1,9 @@
+#Tue Dec 01 16:10:38 CET 2015
+accessType=ReadWrite
+maxValue=25.0
+minValue=16.5
+offset=0.0
+precision=3
+resolution=NaN
+scale=-1.0
+unit=mm

plugins/Microscope.form

@@ -0,0 +1,467 @@
+<?xml version="1.0" encoding="UTF-8" ?>
+
+<Form version="1.5" maxVersion="1.9" type="org.netbeans.modules.form.forminfo.JPanelFormInfo">
+  <AuxValues>
+    <AuxValue name="FormSettings_autoResourcing" type="java.lang.Integer" value="0"/>
+    <AuxValue name="FormSettings_autoSetComponentName" type="java.lang.Boolean" value="false"/>
+    <AuxValue name="FormSettings_generateFQN" type="java.lang.Boolean" value="true"/>
+    <AuxValue name="FormSettings_generateMnemonicsCode" type="java.lang.Boolean" value="false"/>
+    <AuxValue name="FormSettings_i18nAutoMode" type="java.lang.Boolean" value="false"/>
+    <AuxValue name="FormSettings_layoutCodeTarget" type="java.lang.Integer" value="1"/>
+    <AuxValue name="FormSettings_listenerGenerationStyle" type="java.lang.Integer" value="0"/>
+    <AuxValue name="FormSettings_variablesLocal" type="java.lang.Boolean" value="false"/>
+    <AuxValue name="FormSettings_variablesModifier" type="java.lang.Integer" value="2"/>
+  </AuxValues>
+
+  <Layout>
+    <DimensionLayout dim="0">
+      <Group type="103" groupAlignment="0" attributes="0">
+          <Group type="102" alignment="1" attributes="0">
+              <Component id="renderer" pref="512" max="32767" attributes="0"/>
+              <EmptySpace type="unrelated" max="-2" attributes="0"/>
+              <Group type="103" groupAlignment="0" max="-2" attributes="0">
+                  <Component id="jPanel1" linkSize="1" max="32767" attributes="0"/>
+                  <Component id="jPanel2" linkSize="1" alignment="0" max="32767" attributes="0"/>
+                  <Component id="motorPanel1" linkSize="1" alignment="0" max="32767" attributes="0"/>
+                  <Component id="motorPanel2" linkSize="1" alignment="0" max="32767" attributes="0"/>
+                  <Component id="processVariablePanel1" linkSize="1" alignment="0" pref="324" max="32767" attributes="0"/>
+                  <Component id="processVariablePanel2" linkSize="1" alignment="0" pref="324" max="32767" attributes="0"/>
+                  <Component id="jPanel4" alignment="0" max="32767" attributes="0"/>
+              </Group>
+              <EmptySpace max="-2" attributes="0"/>
+          </Group>
+      </Group>
+    </DimensionLayout>
+    <DimensionLayout dim="1">
+      <Group type="103" groupAlignment="0" attributes="0">
+          <Group type="102" attributes="0">
+              <Component id="renderer" max="32767" attributes="0"/>
+              <EmptySpace min="-2" pref="5" max="-2" attributes="0"/>
+          </Group>
+          <Group type="102" alignment="1" attributes="0">
+              <Component id="motorPanel1" min="-2" max="-2" attributes="0"/>
+              <EmptySpace min="-2" max="-2" attributes="0"/>
+              <Component id="motorPanel2" min="-2" max="-2" attributes="0"/>
+              <EmptySpace min="-2" max="-2" attributes="0"/>
+              <Component id="processVariablePanel1" min="-2" max="-2" attributes="0"/>
+              <EmptySpace min="-2" max="-2" attributes="0"/>
+              <Component id="processVariablePanel2" min="-2" max="-2" attributes="0"/>
+              <EmptySpace max="-2" attributes="0"/>
+              <Component id="jPanel2" min="-2" max="-2" attributes="0"/>
+              <EmptySpace max="32767" attributes="0"/>
+              <Component id="jPanel1" min="-2" max="-2" attributes="0"/>
+              <EmptySpace max="32767" attributes="0"/>
+              <Component id="jPanel4" min="-2" max="-2" attributes="0"/>
+              <EmptySpace max="-2" attributes="0"/>
+          </Group>
+      </Group>
+    </DimensionLayout>
+  </Layout>
+  <SubComponents>
+    <Component class="ch.psi.pshell.imaging.Renderer" name="renderer">
+      <Properties>
+        <Property name="autoscrolls" type="boolean" value="true"/>
+        <Property name="deviceName" type="java.lang.String" value="mic-high"/>
+        <Property name="mode" type="ch.psi.pshell.imaging.RendererMode" editor="org.netbeans.modules.form.editors.EnumEditor">
+          <Value id="Fixed"/>
+        </Property>
+        <Property name="showStatus" type="boolean" value="false"/>
+      </Properties>
+    </Component>
+    <Component class="ch.psi.pshell.swing.MotorPanel" name="motorPanel1">
+      <Properties>
+        <Property name="border" type="javax.swing.border.Border" editor="org.netbeans.modules.form.editors2.BorderEditor">
+          <Border info="org.netbeans.modules.form.compat2.border.TitledBorderInfo">
+            <TitledBorder/>
+          </Border>
+        </Property>
+        <Property name="decimals" type="int" value="2"/>
+        <Property name="deviceName" type="java.lang.String" value="cy"/>
+        <Property name="showHoming" type="boolean" value="false"/>
+        <Property name="showJog" type="boolean" value="false"/>
+        <Property name="showStatus" type="boolean" value="false"/>
+        <Property name="showTitle" type="boolean" value="true"/>
+      </Properties>
+    </Component>
+    <Component class="ch.psi.pshell.swing.ProcessVariablePanel" name="processVariablePanel1">
+      <Properties>
+        <Property name="border" type="javax.swing.border.Border" editor="org.netbeans.modules.form.editors2.BorderEditor">
+          <Border info="org.netbeans.modules.form.compat2.border.TitledBorderInfo">
+            <TitledBorder/>
+          </Border>
+        </Property>
+        <Property name="decimals" type="int" value="2"/>
+        <Property name="deviceName" type="java.lang.String" value="x"/>
+        <Property name="showLimitButtons" type="boolean" value="false"/>
+        <Property name="showSlider" type="boolean" value="false"/>
+        <Property name="showTitle" type="boolean" value="true"/>
+        <Property name="stepIncrement" type="double" value="0.001"/>
+        <Property name="stepSize" type="double" value="0.01"/>
+      </Properties>
+    </Component>
+    <Component class="ch.psi.pshell.swing.MotorPanel" name="motorPanel2">
+      <Properties>
+        <Property name="border" type="javax.swing.border.Border" editor="org.netbeans.modules.form.editors2.BorderEditor">
+          <Border info="org.netbeans.modules.form.compat2.border.TitledBorderInfo">
+            <TitledBorder/>
+          </Border>
+        </Property>
+        <Property name="decimals" type="int" value="2"/>
+        <Property name="deviceName" type="java.lang.String" value="cz"/>
+        <Property name="showHoming" type="boolean" value="false"/>
+        <Property name="showJog" type="boolean" value="false"/>
+        <Property name="showStatus" type="boolean" value="false"/>
+        <Property name="showTitle" type="boolean" value="true"/>
+      </Properties>
+    </Component>
+    <Component class="ch.psi.pshell.swing.ProcessVariablePanel" name="processVariablePanel2">
+      <Properties>
+        <Property name="border" type="javax.swing.border.Border" editor="org.netbeans.modules.form.editors2.BorderEditor">
+          <Border info="org.netbeans.modules.form.compat2.border.TitledBorderInfo">
+            <TitledBorder/>
+          </Border>
+        </Property>
+        <Property name="decimals" type="int" value="2"/>
+        <Property name="deviceName" type="java.lang.String" value="omega"/>
+        <Property name="showLimitButtons" type="boolean" value="false"/>
+        <Property name="showSlider" type="boolean" value="false"/>
+        <Property name="showTitle" type="boolean" value="true"/>
+        <Property name="stepIncrement" type="double" value="10.0"/>
+        <Property name="stepSize" type="double" value="90.0"/>
+      </Properties>
+    </Component>
+    <Container class="javax.swing.JPanel" name="jPanel1">
+      <Properties>
+        <Property name="border" type="javax.swing.border.Border" editor="org.netbeans.modules.form.editors2.BorderEditor">
+          <Border info="org.netbeans.modules.form.compat2.border.TitledBorderInfo">
+            <TitledBorder title="Alignment"/>
+          </Border>
+        </Property>
+      </Properties>
+
+      <Layout>
+        <DimensionLayout dim="0">
+          <Group type="103" groupAlignment="0" attributes="0">
+              <Group type="102" alignment="1" attributes="0">
+                  <EmptySpace min="0" pref="0" max="32767" attributes="0"/>
+                  <Component id="jLabel1" min="-2" max="-2" attributes="0"/>
+                  <EmptySpace max="-2" attributes="0"/>
+                  <Component id="spinnerStepAlignment" min="-2" max="-2" attributes="0"/>
+                  <EmptySpace max="-2" attributes="0"/>
+              </Group>
+              <Group type="102" attributes="0">
+                  <EmptySpace pref="65" max="32767" attributes="0"/>
+                  <Group type="103" groupAlignment="0" max="-2" attributes="0">
+                      <Component id="jPanel3" max="32767" attributes="0"/>
+                      <Component id="jPanel5" max="32767" attributes="0"/>
+                      <Component id="jPanel6" max="32767" attributes="0"/>
+                  </Group>
+                  <EmptySpace pref="66" max="32767" attributes="0"/>
+              </Group>
+          </Group>
+        </DimensionLayout>
+        <DimensionLayout dim="1">
+          <Group type="103" groupAlignment="0" attributes="0">
+              <Group type="102" alignment="0" attributes="0">
+                  <EmptySpace max="-2" attributes="0"/>
+                  <Component id="jPanel5" min="-2" max="-2" attributes="0"/>
+                  <EmptySpace min="-2" pref="12" max="-2" attributes="0"/>
+                  <Component id="jPanel3" min="-2" max="-2" attributes="0"/>
+                  <EmptySpace type="unrelated" max="-2" attributes="0"/>
+                  <Component id="jPanel6" min="-2" max="-2" attributes="0"/>
+                  <EmptySpace max="-2" attributes="0"/>
+                  <Group type="103" groupAlignment="3" attributes="0">
+                      <Component id="jLabel1" alignment="3" min="-2" max="-2" attributes="0"/>
+                      <Component id="spinnerStepAlignment" alignment="3" min="-2" max="-2" attributes="0"/>
+                  </Group>
+                  <EmptySpace min="-2" pref="4" max="-2" attributes="0"/>
+              </Group>
+          </Group>
+        </DimensionLayout>
+      </Layout>
+      <SubComponents>
+        <Container class="javax.swing.JPanel" name="jPanel3">
+
+          <Layout>
+            <DimensionLayout dim="0">
+              <Group type="103" groupAlignment="0" attributes="0">
+                  <Group type="102" attributes="0">
+                      <EmptySpace max="-2" attributes="0"/>
+                      <Component id="buttonLeft" min="-2" max="-2" attributes="0"/>
+                      <EmptySpace min="77" pref="77" max="-2" attributes="0"/>
+                      <Component id="buttonRight" min="-2" max="-2" attributes="0"/>
+                      <EmptySpace max="-2" attributes="0"/>
+                  </Group>
+              </Group>
+            </DimensionLayout>
+            <DimensionLayout dim="1">
+              <Group type="103" groupAlignment="0" attributes="0">
+                  <Group type="102" attributes="0">
+                      <EmptySpace min="0" pref="0" max="-2" attributes="0"/>
+                      <Group type="103" groupAlignment="3" attributes="0">
+                          <Component id="buttonRight" alignment="3" min="-2" max="-2" attributes="0"/>
+                          <Component id="buttonLeft" alignment="3" min="-2" max="-2" attributes="0"/>
+                      </Group>
+                  </Group>
+              </Group>
+            </DimensionLayout>
+          </Layout>
+          <SubComponents>
+            <Component class="javax.swing.JButton" name="buttonLeft">
+              <Properties>
+                <Property name="font" type="java.awt.Font" editor="org.netbeans.beaninfo.editors.FontEditor">
+                  <Font name="Dialog" size="12" style="0"/>
+                </Property>
+                <Property name="text" type="java.lang.String" value="&lt;"/>
+                <Property name="minimumSize" type="java.awt.Dimension" editor="org.netbeans.beaninfo.editors.DimensionEditor">
+                  <Dimension value="[65, 25]"/>
+                </Property>
+                <Property name="preferredSize" type="java.awt.Dimension" editor="org.netbeans.beaninfo.editors.DimensionEditor">
+                  <Dimension value="[65, 30]"/>
+                </Property>
+              </Properties>
+              <Events>
+                <EventHandler event="actionPerformed" listener="java.awt.event.ActionListener" parameters="java.awt.event.ActionEvent" handler="buttonLeftActionPerformed"/>
+              </Events>
+            </Component>
+            <Component class="javax.swing.JButton" name="buttonRight">
+              <Properties>
+                <Property name="font" type="java.awt.Font" editor="org.netbeans.beaninfo.editors.FontEditor">
+                  <Font name="Dialog" size="12" style="0"/>
+                </Property>
+                <Property name="text" type="java.lang.String" value="&gt;"/>
+                <Property name="minimumSize" type="java.awt.Dimension" editor="org.netbeans.beaninfo.editors.DimensionEditor">
+                  <Dimension value="[65, 25]"/>
+                </Property>
+                <Property name="preferredSize" type="java.awt.Dimension" editor="org.netbeans.beaninfo.editors.DimensionEditor">
+                  <Dimension value="[65, 30]"/>
+                </Property>
+              </Properties>
+              <Events>
+                <EventHandler event="actionPerformed" listener="java.awt.event.ActionListener" parameters="java.awt.event.ActionEvent" handler="buttonRightActionPerformed"/>
+              </Events>
+            </Component>
+          </SubComponents>
+        </Container>
+        <Component class="javax.swing.JLabel" name="jLabel1">
+          <Properties>
+            <Property name="text" type="java.lang.String" value="Step:"/>
+          </Properties>
+        </Component>
+        <Component class="javax.swing.JSpinner" name="spinnerStepAlignment">
+          <Properties>
+            <Property name="model" type="javax.swing.SpinnerModel" editor="org.netbeans.modules.form.editors2.SpinnerModelEditor">
+              <SpinnerModel initial="0.01" maximum="1.0" minimum="0.001" numberType="java.lang.Double" stepSize="0.01" type="number"/>
+            </Property>
+          </Properties>
+        </Component>
+        <Container class="javax.swing.JPanel" name="jPanel5">
+
+          <Layout>
+            <DimensionLayout dim="0">
+              <Group type="103" groupAlignment="0" attributes="0">
+                  <Group type="102" attributes="0">
+                      <EmptySpace max="32767" attributes="0"/>
+                      <Component id="buttonUp" min="-2" max="-2" attributes="0"/>
+                      <EmptySpace max="32767" attributes="0"/>
+                  </Group>
+              </Group>
+            </DimensionLayout>
+            <DimensionLayout dim="1">
+              <Group type="103" groupAlignment="0" attributes="0">
+                  <Group type="102" attributes="0">
+                      <EmptySpace min="0" pref="0" max="-2" attributes="0"/>
+                      <Component id="buttonUp" min="-2" max="-2" attributes="0"/>
+                      <EmptySpace min="0" pref="0" max="-2" attributes="0"/>
+                  </Group>
+              </Group>
+            </DimensionLayout>
+          </Layout>
+          <SubComponents>
+            <Component class="javax.swing.JButton" name="buttonUp">
+              <Properties>
+                <Property name="font" type="java.awt.Font" editor="org.netbeans.beaninfo.editors.FontEditor">
+                  <Font name="Dialog" size="12" style="0"/>
+                </Property>
+                <Property name="text" type="java.lang.String" value="^"/>
+                <Property name="minimumSize" type="java.awt.Dimension" editor="org.netbeans.beaninfo.editors.DimensionEditor">
+                  <Dimension value="[65, 25]"/>
+                </Property>
+                <Property name="preferredSize" type="java.awt.Dimension" editor="org.netbeans.beaninfo.editors.DimensionEditor">
+                  <Dimension value="[65, 30]"/>
+                </Property>
+              </Properties>
+              <Events>
+                <EventHandler event="actionPerformed" listener="java.awt.event.ActionListener" parameters="java.awt.event.ActionEvent" handler="buttonUpActionPerformed"/>
+              </Events>
+            </Component>
+          </SubComponents>
+        </Container>
+        <Container class="javax.swing.JPanel" name="jPanel6">
+
+          <Layout>
+            <DimensionLayout dim="0">
+              <Group type="103" groupAlignment="0" attributes="0">
+                  <Group type="102" attributes="0">
+                      <EmptySpace max="32767" attributes="0"/>
+                      <Component id="buttonDown" min="-2" max="-2" attributes="0"/>
+                      <EmptySpace max="32767" attributes="0"/>
+                  </Group>
+              </Group>
+            </DimensionLayout>
+            <DimensionLayout dim="1">
+              <Group type="103" groupAlignment="0" attributes="0">
+                  <Group type="102" attributes="0">
+                      <EmptySpace min="0" pref="0" max="-2" attributes="0"/>
+                      <Component id="buttonDown" min="-2" max="-2" attributes="0"/>
+                      <EmptySpace min="0" pref="0" max="-2" attributes="0"/>
+                  </Group>
+              </Group>
+            </DimensionLayout>
+          </Layout>
+          <SubComponents>
+            <Component class="javax.swing.JButton" name="buttonDown">
+              <Properties>
+                <Property name="font" type="java.awt.Font" editor="org.netbeans.beaninfo.editors.FontEditor">
+                  <Font name="Dialog" size="12" style="0"/>
+                </Property>
+                <Property name="text" type="java.lang.String" value="v"/>
+                <Property name="minimumSize" type="java.awt.Dimension" editor="org.netbeans.beaninfo.editors.DimensionEditor">
+                  <Dimension value="[65, 25]"/>
+                </Property>
+                <Property name="preferredSize" type="java.awt.Dimension" editor="org.netbeans.beaninfo.editors.DimensionEditor">
+                  <Dimension value="[65, 30]"/>
+                </Property>
+              </Properties>
+              <Events>
+                <EventHandler event="actionPerformed" listener="java.awt.event.ActionListener" parameters="java.awt.event.ActionEvent" handler="buttonDownActionPerformed"/>
+              </Events>
+            </Component>
+          </SubComponents>
+        </Container>
+      </SubComponents>
+    </Container>
+    <Container class="javax.swing.JPanel" name="jPanel2">
+
+      <Layout>
+        <DimensionLayout dim="0">
+          <Group type="103" groupAlignment="0" attributes="0">
+              <Group type="102" attributes="0">
+                  <EmptySpace min="0" pref="0" max="-2" attributes="0"/>
+                  <Component id="button0" linkSize="2" min="-2" max="-2" attributes="0"/>
+                  <EmptySpace pref="46" max="32767" attributes="0"/>
+                  <Component id="button90" linkSize="2" min="-2" max="-2" attributes="0"/>
+                  <EmptySpace pref="46" max="32767" attributes="0"/>
+                  <Component id="button180" linkSize="2" min="-2" max="-2" attributes="0"/>
+                  <EmptySpace pref="48" max="32767" attributes="0"/>
+                  <Component id="button270" linkSize="2" min="-2" max="-2" attributes="0"/>
+                  <EmptySpace min="0" pref="0" max="-2" attributes="0"/>
+              </Group>
+          </Group>
+        </DimensionLayout>
+        <DimensionLayout dim="1">
+          <Group type="103" groupAlignment="0" attributes="0">
+              <Group type="102" attributes="0">
+                  <EmptySpace min="0" pref="0" max="-2" attributes="0"/>
+                  <Group type="103" groupAlignment="3" attributes="0">
+                      <Component id="button0" alignment="3" min="-2" max="-2" attributes="0"/>
+                      <Component id="button90" alignment="3" min="-2" max="-2" attributes="0"/>
+                      <Component id="button180" alignment="3" min="-2" max="-2" attributes="0"/>
+                      <Component id="button270" alignment="3" min="-2" max="-2" attributes="0"/>
+                  </Group>
+                  <EmptySpace max="-2" attributes="0"/>
+              </Group>
+          </Group>
+        </DimensionLayout>
+      </Layout>
+      <SubComponents>
+        <Component class="javax.swing.JButton" name="button0">
+          <Properties>
+            <Property name="text" type="java.lang.String" value="0"/>
+          </Properties>
+          <Events>
+            <EventHandler event="actionPerformed" listener="java.awt.event.ActionListener" parameters="java.awt.event.ActionEvent" handler="button0ActionPerformed"/>
+          </Events>
+        </Component>
+        <Component class="javax.swing.JButton" name="button270">
+          <Properties>
+            <Property name="text" type="java.lang.String" value="270"/>
+          </Properties>
+          <Events>
+            <EventHandler event="actionPerformed" listener="java.awt.event.ActionListener" parameters="java.awt.event.ActionEvent" handler="button270ActionPerformed"/>
+          </Events>
+        </Component>
+        <Component class="javax.swing.JButton" name="button180">
+          <Properties>
+            <Property name="text" type="java.lang.String" value="180"/>
+          </Properties>
+          <Events>
+            <EventHandler event="actionPerformed" listener="java.awt.event.ActionListener" parameters="java.awt.event.ActionEvent" handler="button180ActionPerformed"/>
+          </Events>
+        </Component>
+        <Component class="javax.swing.JButton" name="button90">
+          <Properties>
+            <Property name="text" type="java.lang.String" value="90"/>
+          </Properties>
+          <Events>
+            <EventHandler event="actionPerformed" listener="java.awt.event.ActionListener" parameters="java.awt.event.ActionEvent" handler="button90ActionPerformed"/>
+          </Events>
+        </Component>
+      </SubComponents>
+    </Container>
+    <Container class="javax.swing.JPanel" name="jPanel4">
+      <Properties>
+        <Property name="border" type="javax.swing.border.Border" editor="org.netbeans.modules.form.editors2.BorderEditor">
+          <Border info="org.netbeans.modules.form.compat2.border.TitledBorderInfo">
+            <TitledBorder title="Camera"/>
+          </Border>
+        </Property>
+      </Properties>
+
+      <Layout>
+        <DimensionLayout dim="0">
+          <Group type="103" groupAlignment="0" attributes="0">
+              <Group type="102" attributes="0">
+                  <EmptySpace max="-2" attributes="0"/>
+                  <Component id="checkHighDef" min="-2" max="-2" attributes="0"/>
+                  <EmptySpace max="32767" attributes="0"/>
+                  <Component id="buttonDefineBeam" min="-2" max="-2" attributes="0"/>
+                  <EmptySpace max="-2" attributes="0"/>
+              </Group>
+          </Group>
+        </DimensionLayout>
+        <DimensionLayout dim="1">
+          <Group type="103" groupAlignment="0" attributes="0">
+              <Group type="102" attributes="0">
+                  <EmptySpace max="-2" attributes="0"/>
+                  <Group type="103" groupAlignment="3" attributes="0">
+                      <Component id="buttonDefineBeam" alignment="3" min="-2" pref="25" max="-2" attributes="0"/>
+                      <Component id="checkHighDef" alignment="3" min="-2" max="-2" attributes="0"/>
+                  </Group>
+                  <EmptySpace min="-2" pref="4" max="-2" attributes="0"/>
+              </Group>
+          </Group>
+        </DimensionLayout>
+      </Layout>
+      <SubComponents>
+        <Component class="javax.swing.JButton" name="buttonDefineBeam">
+          <Properties>
+            <Property name="text" type="java.lang.String" value="Define Beam"/>
+          </Properties>
+          <Events>
+            <EventHandler event="actionPerformed" listener="java.awt.event.ActionListener" parameters="java.awt.event.ActionEvent" handler="buttonDefineBeamActionPerformed"/>
+          </Events>
+        </Component>
+        <Component class="javax.swing.JCheckBox" name="checkHighDef">
+          <Properties>
+            <Property name="selected" type="boolean" value="true"/>
+            <Property name="text" type="java.lang.String" value="High definition"/>
+          </Properties>
+          <Events>
+            <EventHandler event="actionPerformed" listener="java.awt.event.ActionListener" parameters="java.awt.event.ActionEvent" handler="checkHighDefActionPerformed"/>
+          </Events>
+        </Component>
+      </SubComponents>
+    </Container>
+  </SubComponents>
+</Form>

plugins/Microscope.java

@@ -0,0 +1,541 @@
+/*
+ * Copyright (c) 2014 Paul Scherrer Institute. All rights reserved.
+ */
+
+
+import ch.psi.pshell.device.Motor;
+import ch.psi.pshell.device.Positionable;
+import ch.psi.pshell.imaging.Overlay;
+import ch.psi.pshell.imaging.Overlays;
+import ch.psi.pshell.imaging.Pen;
+import ch.psi.pshell.imaging.Renderer;
+import ch.psi.pshell.imaging.RendererListener;
+import ch.psi.pshell.ui.Panel;
+import ch.psi.utils.State;
+import java.awt.Color;
+import java.nio.file.Paths;
+import java.util.logging.Level;
+
+/**
+ *
+ */
+public class Microscope extends Panel {
+    public Microscope() {
+        initComponents();
+    }
+
+     //Overridable callbacks
+    @Override
+    public void onInitialize(int runCount) {                
+       renderer.setPersistenceFile(Paths.get(getController().getSetup().getContextPath(), "BeamMarker.bin"));
+    }
+
+    @Override
+    public void onStateChange(State state, State former) {
+
+    }
+
+    @Override
+    public void onExecutedFile(String fileName, Object result) {
+    }
+
+    
+    //Callback to perform update - in event thread
+    @Override
+    protected void doUpdate() {
+    }
+
+    @SuppressWarnings("unchecked")
+    // <editor-fold defaultstate="collapsed" desc="Generated Code">//GEN-BEGIN:initComponents
+    private void initComponents() {
+
+        renderer = new ch.psi.pshell.imaging.Renderer();
+        motorPanel1 = new ch.psi.pshell.swing.MotorPanel();
+        processVariablePanel1 = new ch.psi.pshell.swing.ProcessVariablePanel();
+        motorPanel2 = new ch.psi.pshell.swing.MotorPanel();
+        processVariablePanel2 = new ch.psi.pshell.swing.ProcessVariablePanel();
+        jPanel1 = new javax.swing.JPanel();
+        jPanel3 = new javax.swing.JPanel();
+        buttonLeft = new javax.swing.JButton();
+        buttonRight = new javax.swing.JButton();
+        jLabel1 = new javax.swing.JLabel();
+        spinnerStepAlignment = new javax.swing.JSpinner();
+        jPanel5 = new javax.swing.JPanel();
+        buttonUp = new javax.swing.JButton();
+        jPanel6 = new javax.swing.JPanel();
+        buttonDown = new javax.swing.JButton();
+        jPanel2 = new javax.swing.JPanel();
+        button0 = new javax.swing.JButton();
+        button270 = new javax.swing.JButton();
+        button180 = new javax.swing.JButton();
+        button90 = new javax.swing.JButton();
+        jPanel4 = new javax.swing.JPanel();
+        buttonDefineBeam = new javax.swing.JButton();
+        checkHighDef = new javax.swing.JCheckBox();
+
+        renderer.setAutoscrolls(true);
+        renderer.setDeviceName("mic-high");
+        renderer.setMode(ch.psi.pshell.imaging.RendererMode.Fixed);
+        renderer.setShowStatus(false);
+
+        motorPanel1.setBorder(javax.swing.BorderFactory.createTitledBorder("cy"));
+        motorPanel1.setDecimals(2);
+        motorPanel1.setDeviceName("cy");
+        motorPanel1.setShowHoming(false);
+        motorPanel1.setShowJog(false);
+        motorPanel1.setShowStatus(false);
+        motorPanel1.setShowTitle(true);
+
+        processVariablePanel1.setBorder(javax.swing.BorderFactory.createTitledBorder("x"));
+        processVariablePanel1.setDecimals(2);
+        processVariablePanel1.setDeviceName("x");
+        processVariablePanel1.setShowLimitButtons(false);
+        processVariablePanel1.setShowSlider(false);
+        processVariablePanel1.setShowTitle(true);
+        processVariablePanel1.setStepIncrement(0.001);
+        processVariablePanel1.setStepSize(0.01);
+
+        motorPanel2.setBorder(javax.swing.BorderFactory.createTitledBorder("cz"));
+        motorPanel2.setDecimals(2);
+        motorPanel2.setDeviceName("cz");
+        motorPanel2.setShowHoming(false);
+        motorPanel2.setShowJog(false);
+        motorPanel2.setShowStatus(false);
+        motorPanel2.setShowTitle(true);
+
+        processVariablePanel2.setBorder(javax.swing.BorderFactory.createTitledBorder("omega"));
+        processVariablePanel2.setDecimals(2);
+        processVariablePanel2.setDeviceName("omega");
+        processVariablePanel2.setShowLimitButtons(false);
+        processVariablePanel2.setShowSlider(false);
+        processVariablePanel2.setShowTitle(true);
+        processVariablePanel2.setStepIncrement(10.0);
+        processVariablePanel2.setStepSize(90.0);
+
+        jPanel1.setBorder(javax.swing.BorderFactory.createTitledBorder("Alignment"));
+
+        buttonLeft.setFont(new java.awt.Font("Dialog", 0, 12)); // NOI18N
+        buttonLeft.setText("<");
+        buttonLeft.setMinimumSize(new java.awt.Dimension(65, 25));
+        buttonLeft.setPreferredSize(new java.awt.Dimension(65, 30));
+        buttonLeft.addActionListener(new java.awt.event.ActionListener() {
+            public void actionPerformed(java.awt.event.ActionEvent evt) {
+                buttonLeftActionPerformed(evt);
+            }
+        });
+
+        buttonRight.setFont(new java.awt.Font("Dialog", 0, 12)); // NOI18N
+        buttonRight.setText(">");
+        buttonRight.setMinimumSize(new java.awt.Dimension(65, 25));
+        buttonRight.setPreferredSize(new java.awt.Dimension(65, 30));
+        buttonRight.addActionListener(new java.awt.event.ActionListener() {
+            public void actionPerformed(java.awt.event.ActionEvent evt) {
+                buttonRightActionPerformed(evt);
+            }
+        });
+
+        javax.swing.GroupLayout jPanel3Layout = new javax.swing.GroupLayout(jPanel3);
+        jPanel3.setLayout(jPanel3Layout);
+        jPanel3Layout.setHorizontalGroup(
+            jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
+            .addGroup(jPanel3Layout.createSequentialGroup()
+                .addContainerGap()
+                .addComponent(buttonLeft, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
+                .addGap(77, 77, 77)
+                .addComponent(buttonRight, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
+                .addContainerGap())
+        );
+        jPanel3Layout.setVerticalGroup(
+            jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
+            .addGroup(jPanel3Layout.createSequentialGroup()
+                .addGap(0, 0, 0)
+                .addGroup(jPanel3Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
+                    .addComponent(buttonRight, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
+                    .addComponent(buttonLeft, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)))
+        );
+
+        jLabel1.setText("Step:");
+
+        spinnerStepAlignment.setModel(new javax.swing.SpinnerNumberModel(0.01d, 0.001d, 1.0d, 0.01d));
+
+        buttonUp.setFont(new java.awt.Font("Dialog", 0, 12)); // NOI18N
+        buttonUp.setText("^");
+        buttonUp.setMinimumSize(new java.awt.Dimension(65, 25));
+        buttonUp.setPreferredSize(new java.awt.Dimension(65, 30));
+        buttonUp.addActionListener(new java.awt.event.ActionListener() {
+            public void actionPerformed(java.awt.event.ActionEvent evt) {
+                buttonUpActionPerformed(evt);
+            }
+        });
+
+        javax.swing.GroupLayout jPanel5Layout = new javax.swing.GroupLayout(jPanel5);
+        jPanel5.setLayout(jPanel5Layout);
+        jPanel5Layout.setHorizontalGroup(
+            jPanel5Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
+            .addGroup(jPanel5Layout.createSequentialGroup()
+                .addContainerGap(javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
+                .addComponent(buttonUp, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
+                .addContainerGap(javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE))
+        );
+        jPanel5Layout.setVerticalGroup(
+            jPanel5Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
+            .addGroup(jPanel5Layout.createSequentialGroup()
+                .addGap(0, 0, 0)
+                .addComponent(buttonUp, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
+                .addGap(0, 0, 0))
+        );
+
+        buttonDown.setFont(new java.awt.Font("Dialog", 0, 12)); // NOI18N
+        buttonDown.setText("v");
+        buttonDown.setMinimumSize(new java.awt.Dimension(65, 25));
+        buttonDown.setPreferredSize(new java.awt.Dimension(65, 30));
+        buttonDown.addActionListener(new java.awt.event.ActionListener() {
+            public void actionPerformed(java.awt.event.ActionEvent evt) {
+                buttonDownActionPerformed(evt);
+            }
+        });
+
+        javax.swing.GroupLayout jPanel6Layout = new javax.swing.GroupLayout(jPanel6);
+        jPanel6.setLayout(jPanel6Layout);
+        jPanel6Layout.setHorizontalGroup(
+            jPanel6Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
+            .addGroup(jPanel6Layout.createSequentialGroup()
+                .addContainerGap(javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
+                .addComponent(buttonDown, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
+                .addContainerGap(javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE))
+        );
+        jPanel6Layout.setVerticalGroup(
+            jPanel6Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
+            .addGroup(jPanel6Layout.createSequentialGroup()
+                .addGap(0, 0, 0)
+                .addComponent(buttonDown, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
+                .addGap(0, 0, 0))
+        );
+
+        javax.swing.GroupLayout jPanel1Layout = new javax.swing.GroupLayout(jPanel1);
+        jPanel1.setLayout(jPanel1Layout);
+        jPanel1Layout.setHorizontalGroup(
+            jPanel1Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
+            .addGroup(javax.swing.GroupLayout.Alignment.TRAILING, jPanel1Layout.createSequentialGroup()
+                .addGap(0, 0, Short.MAX_VALUE)
+                .addComponent(jLabel1)
+                .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
+                .addComponent(spinnerStepAlignment, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
+                .addContainerGap())
+            .addGroup(jPanel1Layout.createSequentialGroup()
+                .addContainerGap(65, Short.MAX_VALUE)
+                .addGroup(jPanel1Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING, false)
+                    .addComponent(jPanel3, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
+                    .addComponent(jPanel5, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
+                    .addComponent(jPanel6, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE))
+                .addContainerGap(66, Short.MAX_VALUE))
+        );
+        jPanel1Layout.setVerticalGroup(
+            jPanel1Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
+            .addGroup(jPanel1Layout.createSequentialGroup()
+                .addContainerGap()
+                .addComponent(jPanel5, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
+                .addGap(12, 12, 12)
+                .addComponent(jPanel3, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
+                .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.UNRELATED)
+                .addComponent(jPanel6, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
+                .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
+                .addGroup(jPanel1Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
+                    .addComponent(jLabel1)
+                    .addComponent(spinnerStepAlignment, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE))
+                .addGap(4, 4, 4))
+        );
+
+        button0.setText("0");
+        button0.addActionListener(new java.awt.event.ActionListener() {
+            public void actionPerformed(java.awt.event.ActionEvent evt) {
+                button0ActionPerformed(evt);
+            }
+        });
+
+        button270.setText("270");
+        button270.addActionListener(new java.awt.event.ActionListener() {
+            public void actionPerformed(java.awt.event.ActionEvent evt) {
+                button270ActionPerformed(evt);
+            }
+        });
+
+        button180.setText("180");
+        button180.addActionListener(new java.awt.event.ActionListener() {
+            public void actionPerformed(java.awt.event.ActionEvent evt) {
+                button180ActionPerformed(evt);
+            }
+        });
+
+        button90.setText("90");
+        button90.addActionListener(new java.awt.event.ActionListener() {
+            public void actionPerformed(java.awt.event.ActionEvent evt) {
+                button90ActionPerformed(evt);
+            }
+        });
+
+        javax.swing.GroupLayout jPanel2Layout = new javax.swing.GroupLayout(jPanel2);
+        jPanel2.setLayout(jPanel2Layout);
+        jPanel2Layout.setHorizontalGroup(
+            jPanel2Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
+            .addGroup(jPanel2Layout.createSequentialGroup()
+                .addGap(0, 0, 0)
+                .addComponent(button0)
+                .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED, 46, Short.MAX_VALUE)
+                .addComponent(button90)
+                .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED, 46, Short.MAX_VALUE)
+                .addComponent(button180)
+                .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED, 48, Short.MAX_VALUE)
+                .addComponent(button270)
+                .addGap(0, 0, 0))
+        );
+
+        jPanel2Layout.linkSize(javax.swing.SwingConstants.HORIZONTAL, new java.awt.Component[] {button0, button180, button270, button90});
+
+        jPanel2Layout.setVerticalGroup(
+            jPanel2Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
+            .addGroup(jPanel2Layout.createSequentialGroup()
+                .addGap(0, 0, 0)
+                .addGroup(jPanel2Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
+                    .addComponent(button0)
+                    .addComponent(button90)
+                    .addComponent(button180)
+                    .addComponent(button270))
+                .addContainerGap())
+        );
+
+        jPanel4.setBorder(javax.swing.BorderFactory.createTitledBorder("Camera"));
+
+        buttonDefineBeam.setText("Define Beam");
+        buttonDefineBeam.addActionListener(new java.awt.event.ActionListener() {
+            public void actionPerformed(java.awt.event.ActionEvent evt) {
+                buttonDefineBeamActionPerformed(evt);
+            }
+        });
+
+        checkHighDef.setSelected(true);
+        checkHighDef.setText("High definition");
+        checkHighDef.addActionListener(new java.awt.event.ActionListener() {
+            public void actionPerformed(java.awt.event.ActionEvent evt) {
+                checkHighDefActionPerformed(evt);
+            }
+        });
+
+        javax.swing.GroupLayout jPanel4Layout = new javax.swing.GroupLayout(jPanel4);
+        jPanel4.setLayout(jPanel4Layout);
+        jPanel4Layout.setHorizontalGroup(
+            jPanel4Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
+            .addGroup(jPanel4Layout.createSequentialGroup()
+                .addContainerGap()
+                .addComponent(checkHighDef)
+                .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
+                .addComponent(buttonDefineBeam)
+                .addContainerGap())
+        );
+        jPanel4Layout.setVerticalGroup(
+            jPanel4Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
+            .addGroup(jPanel4Layout.createSequentialGroup()
+                .addContainerGap()
+                .addGroup(jPanel4Layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
+                    .addComponent(buttonDefineBeam, javax.swing.GroupLayout.PREFERRED_SIZE, 25, javax.swing.GroupLayout.PREFERRED_SIZE)
+                    .addComponent(checkHighDef))
+                .addGap(4, 4, 4))
+        );
+
+        javax.swing.GroupLayout layout = new javax.swing.GroupLayout(this);
+        this.setLayout(layout);
+        layout.setHorizontalGroup(
+            layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
+            .addGroup(javax.swing.GroupLayout.Alignment.TRAILING, layout.createSequentialGroup()
+                .addComponent(renderer, javax.swing.GroupLayout.DEFAULT_SIZE, 512, Short.MAX_VALUE)
+                .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.UNRELATED)
+                .addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING, false)
+                    .addComponent(jPanel1, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
+                    .addComponent(jPanel2, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
+                    .addComponent(motorPanel1, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
+                    .addComponent(motorPanel2, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
+                    .addComponent(processVariablePanel1, javax.swing.GroupLayout.DEFAULT_SIZE, 324, Short.MAX_VALUE)
+                    .addComponent(processVariablePanel2, javax.swing.GroupLayout.DEFAULT_SIZE, 324, Short.MAX_VALUE)
+                    .addComponent(jPanel4, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE))
+                .addContainerGap())
+        );
+
+        layout.linkSize(javax.swing.SwingConstants.HORIZONTAL, new java.awt.Component[] {jPanel1, jPanel2, motorPanel1, motorPanel2, processVariablePanel1, processVariablePanel2});
+
+        layout.setVerticalGroup(
+            layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
+            .addGroup(layout.createSequentialGroup()
+                .addComponent(renderer, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
+                .addGap(5, 5, 5))
+            .addGroup(javax.swing.GroupLayout.Alignment.TRAILING, layout.createSequentialGroup()
+                .addComponent(motorPanel1, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
+                .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
+                .addComponent(motorPanel2, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
+                .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
+                .addComponent(processVariablePanel1, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
+                .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
+                .addComponent(processVariablePanel2, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
+                .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
+                .addComponent(jPanel2, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
+                .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
+                .addComponent(jPanel1, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
+                .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
+                .addComponent(jPanel4, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
+                .addContainerGap())
+        );
+    }// </editor-fold>//GEN-END:initComponents
+    
+    Overlay beam;
+    
+    private void buttonDefineBeamActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_buttonDefineBeamActionPerformed
+        try{
+            Pen pen = new Pen(Color.RED);
+            final Overlay selection  = new Overlays.Rect(pen);
+            
+            renderer.addListener(new RendererListener() {
+                @Override
+                public void onSelectionFinished(Renderer renderer, Overlay overlay) {
+                    System.out.println(overlay + " - " + selection + " - " + (overlay == selection));
+                    if (overlay == selection){
+                        try {
+                            if (overlay.getLength() > 0) {
+                                beam = overlay.copy();
+                                beam.setPen(pen);
+                                beam.setSolid(false);
+                                beam.setMovable(true);
+                                renderer.setMarker(beam);                            
+                            }
+                        } catch (Exception ex) {
+                            getLogger().log(Level.WARNING, null, ex);
+                        } finally {
+                            renderer.removeListener(this);
+                        }
+                    }
+                }
+                @Override
+                public void onSelectionAborted(Renderer renderer, Overlay overlay) {
+                    if (overlay == selection){
+                        renderer.removeListener(this);
+                    }
+                }
+            });
+            renderer.removeOverlay(beam);
+            renderer.startSelection(selection);
+            
+        } catch (Exception ex){
+            showException(ex);
+        }
+        
+    }//GEN-LAST:event_buttonDefineBeamActionPerformed
+
+    private void checkHighDefActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_checkHighDefActionPerformed
+        renderer.setDeviceName(checkHighDef.isSelected() ?  "mic-high" : "mic-low");
+    }//GEN-LAST:event_checkHighDefActionPerformed
+
+    private void button0ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_button0ActionPerformed
+        try{
+            ((Positionable)getDevice("omega")).moveAsync(0.0);
+        } catch (Exception ex){
+            showException(ex);
+        }
+    }//GEN-LAST:event_button0ActionPerformed
+
+    private void button90ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_button90ActionPerformed
+        try{
+            ((Positionable)getDevice("omega")).moveAsync(90.0);
+        } catch (Exception ex){
+            showException(ex);
+        }
+    }//GEN-LAST:event_button90ActionPerformed
+
+    private void button180ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_button180ActionPerformed
+        try{
+            ((Positionable)getDevice("omega")).moveAsync(180.0);
+        } catch (Exception ex){
+            showException(ex);
+        }
+    }//GEN-LAST:event_button180ActionPerformed
+
+    private void button270ActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_button270ActionPerformed
+        try{
+            ((Positionable)getDevice("omega")).moveAsync(270.0);
+        } catch (Exception ex){
+            showException(ex);
+        }
+    }//GEN-LAST:event_button270ActionPerformed
+
+    double getStep(){
+        //return  0.01;
+        return (Double)spinnerStepAlignment.getValue();
+    }
+    
+    private void buttonLeftActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_buttonLeftActionPerformed
+        try{
+            ((ch.psi.pshell.epics.Positionable)getDevice("x")).moveRelAsync(-getStep());
+        } catch (Exception ex){
+            showException(ex);
+        }
+    }//GEN-LAST:event_buttonLeftActionPerformed
+
+    private void buttonRightActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_buttonRightActionPerformed
+        try{
+            ((ch.psi.pshell.epics.Positionable)getDevice("x")).moveRelAsync(getStep());
+        } catch (Exception ex){
+            showException(ex);
+        }
+    }//GEN-LAST:event_buttonRightActionPerformed
+
+    private void buttonUpActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_buttonUpActionPerformed
+        try{
+            doVerticalStep(getStep());
+        } catch (Exception ex){
+            showException(ex);
+        }        
+    }//GEN-LAST:event_buttonUpActionPerformed
+
+    private void buttonDownActionPerformed(java.awt.event.ActionEvent evt) {//GEN-FIRST:event_buttonDownActionPerformed
+        try{
+            doVerticalStep(-getStep());
+        } catch (Exception ex){
+            showException(ex);
+        }        
+        
+    }//GEN-LAST:event_buttonDownActionPerformed
+
+    public void doVerticalStep(double offset) throws Exception
+     {
+        //Todo: create motor group
+        double omega = Math.toRadians((Double) ((Positionable)getDevice("omega")).getPosition());        
+        double z = offset * Math.sin(omega);
+        double y = offset * Math.cos(omega);
+        ((Motor)getDevice("cy")).moveRelAsync(y);
+        ((Motor)getDevice("cz")).moveRelAsync(z);
+     }
+
+    
+    // Variables declaration - do not modify//GEN-BEGIN:variables
+    private javax.swing.JButton button0;
+    private javax.swing.JButton button180;
+    private javax.swing.JButton button270;
+    private javax.swing.JButton button90;
+    private javax.swing.JButton buttonDefineBeam;
+    private javax.swing.JButton buttonDown;
+    private javax.swing.JButton buttonLeft;
+    private javax.swing.JButton buttonRight;
+    private javax.swing.JButton buttonUp;
+    private javax.swing.JCheckBox checkHighDef;
+    private javax.swing.JLabel jLabel1;
+    private javax.swing.JPanel jPanel1;
+    private javax.swing.JPanel jPanel2;
+    private javax.swing.JPanel jPanel3;
+    private javax.swing.JPanel jPanel4;
+    private javax.swing.JPanel jPanel5;
+    private javax.swing.JPanel jPanel6;
+    private ch.psi.pshell.swing.MotorPanel motorPanel1;
+    private ch.psi.pshell.swing.MotorPanel motorPanel2;
+    private ch.psi.pshell.swing.ProcessVariablePanel processVariablePanel1;
+    private ch.psi.pshell.swing.ProcessVariablePanel processVariablePanel2;
+    private ch.psi.pshell.imaging.Renderer renderer;
+    private javax.swing.JSpinner spinnerStepAlignment;
+    // End of variables declaration//GEN-END:variables
+}

script/CollimatorX.py

@@ -0,0 +1,41 @@
+from mathutils import Gaussian,fit_gaussian, calculate_peaks
+
+##############################################################################################
+#Setup
+##############################################################################################
+#try:
+#    collimator.move("In")
+#except:
+#    pass
+
+shutter.write(1)
+
+step_size = 0.05
+
+##############################################################################################
+#Scan
+##############################################################################################
+
+result = lscan (collimatorX, diode, -0.3, 0.3 , 30, 0.2, relative = True)
+shutter.write(0)
+
+
+##############################################################################################
+#Peak detection
+##############################################################################################
+
+y = result.getReadable(0)
+x = result.getPositions(0)
+(normalization, mean, sigma) = fit_gaussian(y, x, True)
+fitted_gaussian_function = Gaussian(normalization, mean, sigma)
+print "Mean = " + str(mean)
+
+
+resolution = step_size/100
+fit_gaussian = []
+for p in frange(x[0],x[-1],resolution, True):
+    fit_gaussian.append(fitted_gaussian_function.value(p))
+gx = frange(x[0], x[-1]+resolution, resolution)
+
+plots = plot([y, fit_gaussian], ["data", "gaussian"], xdata = [x,gx] )
+plots[0].addMarker(mean, None, "Mean=" + str(round(mean,2)), None)

script/GaussianFit.py

@@ -0,0 +1,45 @@
+"""
+Multi-peak search and gaussian fitting
+""" 
+
+from mathutils import estimate_peak_indexes, fit_gaussians, create_fit_point_list
+
+start = 1
+end = 30
+step_size = 0.2
+
+result= lscan(sout,sinp,start,end,[step_size,],0.05)
+
+path = get_current_data_group()
+set_attribute(path, "ApertureX", apertureX.read())
+
+readable = result.getReadable(0)
+positions = result.getPositions(0)
+
+threshold = (min(readable) + max(readable))/2
+min_peak_distance = 5.0
+
+peaks = estimate_peak_indexes(readable, positions, threshold, min_peak_distance)
+print "Peak indexes: " + str(peaks)
+print "Peak x: " + str(map(lambda x:positions[x], peaks))
+print "Peak y: " + str(map(lambda x:readable[x], peaks))
+
+log("Highest peak index = " +str(peaks[0]))
+
+#Manually adding a dataset
+data = [ [1,2,3,4,5],  [2,3,4,5,6],  [3,4,5,6,7]]
+path="group/data2"
+save_dataset(path, data)
+
+gaussians = fit_gaussians(readable, positions, peaks)
+
+
+plots = plot([readable],["Multi-peak search"],[positions])
+for i in range(len(peaks)):
+    peak = peaks[i]
+    (norm, mean, sigma) = gaussians[i]
+    if abs(mean - positions[peak]) < min_peak_distance:
+        print "Peak -> " +  str(mean)
+        plots[0].addMarker(mean, None, "N="+str(round(norm,2)), None)
+    else:
+        print "Invalid gaussian fit: " +  str(mean)

script/PolynomialFit.py

@@ -0,0 +1,57 @@
+"""
+Function fitting and peak search with mathutils facade
+""" 
+from mathutils import fit_polynomial,fit_gaussian, fit_harmonic, calculate_peaks
+from mathutils import PolynomialFunction, Gaussian, HarmonicOscillator
+import math
+
+
+start = 0
+end = 5
+step_size = 0.1
+
+result= lscan(sout,sinp,start,end,[step_size,],0.01)
+
+readable = result.getReadable(0)
+positions = result.getPositions(0)
+
+def get_function_data(function, start, end, resolution):
+    ret = []
+    for x in frange(start, end, resolution, True):
+        fit_polinomial.append(function.value(x))
+
+
+pars_polynomial = (a0, a1, a2, a3, a4, a5, a6) = fit_polynomial(readable, positions, 6)
+fitted_polynomial_function = PolynomialFunction(pars_polynomial)
+print pars_polynomial 
+
+(normalization, mean, sigma) = fit_gaussian(readable, positions, True)
+fitted_gaussian_function = Gaussian(normalization, mean, sigma)
+print (normalization, mean, sigma)
+
+(amplitude, angular_frequency, phase) = fit_harmonic(readable, positions)
+fitted_harmonic_function = HarmonicOscillator(amplitude, angular_frequency, phase)
+print (amplitude, angular_frequency, phase) 
+
+
+resolution = step_size/100
+fit_polinomial = []
+fit_gaussian = []
+fit_harmonic = []
+for x in frange(start,end,resolution, True):
+    fit_polinomial.append(fitted_polynomial_function.value(x))
+    fit_gaussian.append(fitted_gaussian_function.value(x))
+    fit_harmonic.append(fitted_harmonic_function.value(x))
+x = frange(start, end+resolution, resolution)
+
+
+peaks = calculate_peaks(fitted_polynomial_function)
+
+plots = plot([readable, fit_polinomial, fit_gaussian, fit_harmonic] , 
+    ["data", "polinomial", "gaussian", "harmonic"], xdata = [positions,x,x,x] )
+
+for p in peaks:    
+    print "Max: " + str(p)
+    plots[0].addMarker(p, None, "Max=" + str(round(p,2)), None)
+import java.awt.Color
+plots[0].addMarker(mean, None, "Mean=" + str(round(mean,2)), java.awt.Color.LIGHT_GRAY)

script/back.py

@@ -1,9 +0,0 @@
-import java.util.logging.Logger as Logger
-logger = Logger.getLogger("back")
-
-
-logger.info("Started") 
-
-asd
-
-

script/local.py

@@ -1,3 +1,28 @@
-#det.data.monitored=True
+###################################################################################################
+#  Deployment specific global definitions - executed after startup.py
+###################################################################################################
+
+
+#Uncomment this line to create the simulated devices needed to the tutorial scripts.
+#run("tutorial/devices")
 
-asd
+import random
+
+
+class SimulatedOutput(Writable):
+    def write(self, value):
+        pass
+
+
+class SimulatedInput(Readable):
+    def __init__(self):
+        self.x = 0.0
+
+    def read(self):
+        self.x = self.x + 0.2
+        noise = (random.random() - 0.5) / 20.0
+        return math.sin(self.x)  + noise
+
+
+sout = SimulatedOutput()
+sinp = SimulatedInput()

script/local.py~

@@ -0,0 +1,7 @@
+###################################################################################################
+#  Deployment specific global definitions - executed after startup.py
+###################################################################################################
+
+
+#Uncomment this line to create the simulated devices needed to the tutorial scripts.
+#run("tutorial/devices")

script/startup.py

@@ -1,310 +0,0 @@
-import sys
-import time
-import math
-from array import array
-
-import java.lang.Class as Class
-import org.python.core.PyArray as PyArray
-import ch.psi.pshell.dev.MotorGroupBase.MoveMode as MoveMode
-
-import ch.psi.pshell.scan.LineScan 
-import ch.psi.pshell.scan.AreaScan
-import ch.psi.pshell.scan.VectorScan
-import ch.psi.pshell.dev.Readable as Readable
-
-import ch.psi.pshell.epics.Epics as Epics
-import ch.psi.pshell.epics.EpicsScan as EpicsScan
-
-
-def onScanBeforeReadout(scan):
-    try:
-        if (scan.before_read!=None):
-            scan.before_read()
-    except AttributeError:
-        pass
-
-def onScanAfterReadout(scan):
-    try:
-        if (scan.after_read!=None):
-            scan.after_read()
-    except AttributeError:
-        pass
-
-class LineScan(ch.psi.pshell.scan.LineScan):
-    def onBeforeReadout(self):
-        onScanBeforeReadout(self)
-
-    def onAfterReadout(self):
-        onScanAfterReadout(self)
-
-class AreaScan(ch.psi.pshell.scan.AreaScan):
-    def onBeforeReadout(self):
-        onScanBeforeReadout(self)
-
-    def onAfterReadout(self):
-        onScanAfterReadout(self)
-
-class VectorScan(ch.psi.pshell.scan.VectorScan):
-    def onBeforeReadout(self):
-        onScanBeforeReadout(self)
-
-    def onAfterReadout(self):
-        onScanAfterReadout(self)
-
-def sleep(sec):
-    time.sleep(sec)
-
-def toList(obj):
-    if isinstance(obj,tuple):
-        return list(obj)
-    if not isinstance(obj,list):
-        return [obj,]
-    return obj
-
-
-def lscan(writables, readables, start, end, steps, latency=0.0, plot=None, before_read=None, after_read=None):
-    """Line Scan: positioners change together, linearly from start to end positions.
-
-    Args:
-        writables(list of Writable): Positioners set on each step.
-        readables(list of Readable): Sensors to be sampled on each step.
-        start(list of float): start positions of writables.
-        end(list of float): final positions of writables.
-        steps(int): number of scan steps.
-        latency(float, optional): sleep time in each step before readout, defaults to 0.0.
-        plot(str, optional): plotting context name.
-        before_read (function): callback on each step, before each readout.
-        after_read (function): callback on each step, after each readout.
-
-    Returns:
-        ArrayList of ScanRecord objects.
-
-    """    
-    latency_ms=int(latency*1000)
-    writables=toList(writables)
-    readables=toList(readables)
-    start=toList(start)
-    end=toList(end)    
-    scan = LineScan(writables,readables, start, end , steps,latency_ms, controller)
-    scan.before_read=before_read
-    scan.after_read=after_read
-    scan.setPlotName(plot)
-    scan.start()
-    return scan.getResult()
-
-def vscan(writables, readables, vector, latency=0.0, plot=None, before_read=None, after_read=None):
-    """Vector Scan: positioners change following values provided in a vector.
-
-    Args:
-        writables(list of Writable): Positioners set on each step.
-        readables(list of Readable): Sensors to be sampled on each step.
-        vector(list of list of float): table of positioner values.
-        latency(float, optional): sleep time in each step before readout, defaults to 0.0.
-        plot(str, optional): plotting context name.
-        before_read (function): callback on each step, before each readout.
-        after_read (function): callback on each step, after each readout.
-
-    Returns:
-        ArrayList of ScanRecord objects.
-
-    """    
-    latency_ms=int(latency*1000)
-    writables=toList(writables)
-    readables=toList(readables)
-    scan = VectorScan(writables,readables, vector, latency_ms, controller)
-    scan.before_read=before_read
-    scan.after_read=after_read
-    scan.setPlotName(plot)
-    scan.start()
-    return scan.getResult()
-
-def ascan(writables, readables, start, end, steps, latency=0.0, plot=None, before_read=None, after_read=None):
-    """Area Scan: multi-dimentional scan, each positioner is a dimention.
-
-    Args:
-        writables(list of Writable): Positioners set on each step.
-        readables(list of Readable): Sensors to be sampled on each step.
-        start(list of float): start positions of writables.
-        end(list of float): final positions of writables.
-        steps(list of int): number of scan steps for each positioner.
-        latency(float, optional): sleep time in each step before readout, defaults to 0.0.
-        plot(str, optional): plotting context name.
-        before_read (function): callback on each step, before each readout.
-        after_read (function): callback on each step, after each readout.
-
-    Returns:
-        ArrayList of ScanRecord objects.
-
-    """    
-    latency_ms=int(latency*1000)
-    writables=toList(writables)
-    readables=toList(readables)
-    start=toList(start)
-    end=toList(end)    
-    scan = AreaScan(writables,readables, start, end , steps,latency_ms, controller)
-    scan.before_read=before_read
-    scan.after_read=after_read
-    scan.setPlotName(plot)
-    scan.start()
-    return scan.getResult()    
-
-def tscan(readables, points, interval, plot=None, before_read=None, after_read=None):
-    """Time Scan: sensors are sampled in fixed time intervals.
-
-    Args:
-        readables(list of Readable): Sensors to be sampled on each step.
-        points(int): number of samples.
-        interval(float): time interval between readouts.
-        plot(str, optional): plotting context name.
-        before_read (function): callback on each step, before each readout.
-        after_read (function): callback on each step, after each readout.
-
-    Returns:
-        ArrayList of ScanRecord objects.
-
-    """      
-    latency_ms=int(interval*1000)
-    writables=[]
-    readables=toList(readables)
-    start=[0,]
-    end=[points,]
-    steps=points
-    scan = LineScan(writables,readables, start, end , steps,latency_ms, controller)
-    scan.before_read=before_read
-    scan.after_read=after_read
-    scan.setPlotName(plot)
-    scan.start()
-    return scan.getResult()
-
-def escan(name, plot=None):
-    """Epics Scan: execute an Epics Scan Record.
-
-    Args:
-        name(str): Name of scan record.
-        plot(str, optional): plotting context name.
-
-    Returns:
-        ArrayList of ScanRecord objects.
-
-    """      
-    scan = EpicsScan(name, controller)
-    scan.setPlotName(plot)
-    scan.start()
-    return scan.getResult()
-
-
-
-class ListReader(Readable):
-    def __init__(self,list, plot):
-        self.counter=0
-        self.list=list        
-    def getName(self):
-        return None
-    def read(self):
-        if (self.counter>=len(self.list)):
-            return None;
-        ret = self.list[self.counter]
-        self.counter=self.counter+1
-        return ret
-
-def plot(data, plot=None):
-    """Plot a list in a graph.
-
-    Args:
-        data(list): data to be plotted
-        plot(str, optional): plotting context name.
-
-    """          
-    latency_ms=0
-    data=toList(data)
-    writables=[]
-    readables=[ListReader(data,plot),]
-    start=[0,]
-    end=[len(data),]
-    steps=len(data)-1
-    scan = LineScan(writables,readables, start, end , steps,latency_ms, controller)
-    scan.setPlotName(plot)
-    scan.start()
-
-channel_types = {
-    'b': "java.lang.Byte",
-    'i': "java.lang.Short",
-    'l': "java.lang.Integer",
-    'd': "java.lang.Double",
-    's': "java.lang.String",
-    
-    'b,': "[B",
-    'i,': "[S",
-    'l,': "[I",
-    'd,': "[D",
-    's,': "[Ljava.lang.String;",
-}
-
-array_types = {
-    int: "i",
-    long: "l",
-    float:"d",
-    str:Class.forName("java.lang.String"),    
-}
-
-def caget(name, type='d', size=None):    
-    """Reads an Epics PV.
-
-    Args:
-        name(str): PV name
-        type(str, optional): type of PV, defaults 'd'.
-            Scalar values: 'b', 'i', 'l', 'd', 's'.
-            Array: values: 'b,', 'i,', 'l,', 'd,', 's,'.
-    """          
-    if (size==None):
-        return Epics.get(name, Class.forName(channel_types.get(type,type)))
-    else:
-        return Epics.get(name, Class.forName(channel_types.get(type,type)),size)
-
-def adjustPutVal(value):
-    if isinstance(value,tuple):
-        value =  list(value)
-    if isinstance(value,list):
-        array = PyArray(array_types.get(type(value[0]),'d'))
-        array.fromlist(value) 
-        value=array
-    return value
-
-def caput(name, value):        
-    """Writes to an Epics PV.
-
-    Args:
-        name(str): PV name
-        value(scalar, string or array): new PV value.
-    """  
-    value=adjustPutVal(value)
-    return Epics.put(name, value)
-
-def caputq(name, value):        
-    """Writes to an Epics PV and does not wait.
-
-    Args:
-        name(str): PV name
-        value(scalar, string or array): new PV value.
-    """  
-    value=adjustPutVal(value)
-    return Epics.putq(name, value)
-
-def log(log):        
-    """Writes log to data file.
-
-    Args:        
-         log(str): Log string
-
-    """  
-    controller.getDataManager().addLog(str(log))
-
-def startBackgroudTask(script, interval):
-    interval_ms=int(interval*1000)
-    controller.taskManager.create(script,interval_ms)
-    controller.taskManager.start(scrip)
-
-def stopBackgroudTask(script):
-    controller.taskManager.stop(scrip)
-
-execfile(controller.setup.getScriptPath()+"/local.py")

script/test/calc.groovy

@@ -1,6 +0,0 @@
-
-
-def calc(a){
-    a*2
-}
-

script/test/calc.js

@@ -1,5 +0,0 @@
-
-
-function calc(a) {
-     return a * 5;
- }

script/test/calc.py

@@ -1,3 +0,0 @@
-def calc(a):
-    return a*2
-

script/test/cls.groovy

@@ -1,7 +0,0 @@
-package script
-class cls {
-    double val = 1.0
-    void exec(){
-        println "Exec"
-    } 
-}

script/test/cls.py

@@ -1,4 +0,0 @@
-class cls:
-    def execute(self):
-        print "Execute"
-

script/test/scan.py

@@ -1,3 +0,0 @@
-def calc(a):
-    return a*2
-

script/test/script.groovy

@@ -1,31 +0,0 @@
-
-def function(a){
-    a*2
-}
-//evaluate (new File("calc.groovy"))
-//evaluate (new File("cls.groovy"))
-
-println "--------------"
-
-lib.load "calc"
-cls = lib.load "cls"
-
-
-//This is how to load a new class dinamically
-//  ClassLoader parent = lib.class.getClassLoader();
-//  groovy.lang.GroovyClassLoader loader = new groovy.lang.GroovyClassLoader(parent);
-//  Class cls = loader.parseClass(new File("script\\cls.groovy"));
-
-    
-println dev.get()
-println dev2.val
-println calc(6)
-
-
-//cls = Class.forName('cls')
-//obj = new cls()
-obj = cls.newInstance()
-println obj.val
-obj.exec()
-
-

script/test/script.js

@@ -1,13 +0,0 @@
-function calcx(a) {
-     return a * 5;
- }
- 
-print('Hello, World')
-lib.load ("calc")
-
- 
-a=3
-a
-print (dev.get()) 
-print (dev2.val)
-print (calc(5))

script/test/script.py

@@ -1,42 +0,0 @@
-import sys
-import time
-
-#To add library folders from within the script
-#sys.path.append("./site-packages")
-
-
-import requests
-r = requests.get('https://api.github.com', auth=('user', 'pass')) 
-print r.status_code
-print r.headers['content-type']
-r.close()
-
-
-def calc2(a):
-    return a*2
-time.sleep(2)
-#import os
-#print os.environ
-#import calc
-
-
-lib.load("calc")
-lib.load("cls")
-time.sleep(2)
-for x in range(3):
-    print x
-    while(True):
-        print x*2
-        break
-time.sleep(2)
-x=cls()
-x.execute()
-print dev.take()
-print dev2.val
-time.sleep(1)
-print calc(4)
-
-
-"""
-It lives!!!!
-"""

script/test/startup.groovy

@@ -1,53 +0,0 @@
-import ch.psi.pshell.scan.LineScan;
-import ch.psi.pshell.scan.AreaScan;
-
-
-def sleep(millis){
-    Thread.sleep(millis);
-}
-
-def toArray(obj){
-   /* if (!obj.getClass().isArray()){
-        arr =  java.lang.reflect.Array.newInstance(obj.getClass(), 1);
-        arr[0]= obj;
-        obj=arr
-    }*/
-    return obj
-}
-
-
-def scan(writables, readables, start, end, steps, latency_ms=0, plot=null){
-    writables=toList(writables)
-    readables=toList(readables)
-    start=toList(start)
-    end=toList(end)    
-    scan = LineScan(writables,readables, start, end , steps,latency_ms, controller)
-    scan.setPlotName(plot)
-    scan.start()
-    return scan.getResult()
-}
-
-def tscan(readables, points, interval_ms, plot=null){
-    writables=[]
-    //readables=toList(readables)
-    readables=[readables,]
-    start=[0]
-    
-    end=[points]
-    steps=points
-    scan = LineScan(writables,readables, start, end , steps,interval_ms, controller)
-    scan.setPlotName(plot)
-    scan.start()
-    return scan.getResult()
-}
-
-def ascan(writables, readables, start, end, steps, latency_ms0, plot=null){
-    writables=toList(writables)
-    readables=toList(readables)
-    start=toList(start)
-    end=toList(end)    
-    scan = AreaScan(writables,readables, start, end , steps,latency_ms, controller)
-    scan.setPlotName(plot)
-    scan.start()
-    return scan.getResult()    
-}

script/test/test1.py

@@ -1,5 +0,0 @@
-""" 
-Line Scan
-"""
-
-a= lscan(inp,(sin,out,arr),0,40,20,0.1)

script/test/test2.py

@@ -1,16 +0,0 @@
-""" 
-Line Scan with 2 writables and triggering
-"""
-
-index=0 
-
-def BeforeReadout():
-    global index
-    print "Frame = " + str(index)
-    index=index+1
-    #log("trigger " + index)
-    caput("TESTIOC:TESTBO:MyBO","On")
-    caput("TESTIOC:TESTBO:MyBO","Off")    
-
-
-a= lscan((motor,inp),(sin,out,arr),(0,0),(4,40),20,0.1, before_read=BeforeReadout)

script/test/test3.py

@@ -1,12 +0,0 @@
-"""
-Processing and plotting scan data
-""" 
-
-inp.write(0.0)
-scan1= lscan(inp,(sin,out,arr),0,40,20,0.1,"Scan 1")
-scan2= lscan(inp,(sin,out,arr),0,40,20,0.1,"Scan 2")
-result=[]
-for i in range(20):
-	result.append(scan1[i].values[0]+scan2[i].values[0])
-plot(result)
-print result

script/test/test4.py

@@ -1,11 +0,0 @@
-"""
-Vector Scan
-"""
-
-vector = [  [1,1] , [1,2] , [1,3] , [1,4]   ,
-                     [1.5,2.5]              , 
-            [2,1] , [2,2] , [2,3] , [2,4]   ,
-                     [2.5,2.5]              ,
-            [3,1] , [3,2] , [3,3] , [3,4]     ]
-
-a= vscan((dev,inp),(sin,out),vector,0.1)

script/test/test5.py

@@ -1,5 +0,0 @@
-"""
-Area Scan
-"""
-
-ascan((dev,out),(sin,out,arr),(0,10),(20,30),(100,100))

script/test/test6.py

@@ -1,36 +0,0 @@
-""" 
-Creating pseudo-devices
-"""
-import time
-
-sin_val=None        
-        
-class Sensor(ch.psi.pshell.dev.Readable):
-    def read(self):
-        global sin_val
-        return sin_val + time.clock()
-    def getName(self):
-        return "Sensor"
-
-class Positioner(ch.psi.pshell.dev.Writable):
-    def write(self,pos):
-        print pos
-    def getName(self):
-        return "Positioner"
-
-class Listener (ch.psi.pshell.dev.DeviceListener):
-    def onStateChanged(self, device, state, former):
-        pass
-    def onValueChanged(self, device, value, former):
-        global sin_val
-        sin_val=value
-
-sensor=Sensor()
-positioner=Positioner()
-listener = Listener()
-
-sin.addListener(listener)
-try:
-    a= lscan((inp,positioner),(sin,sensor),(0,0),(40,10),20,0.1)
-finally:
-    sin.removeListener(listener)