x03da/plugins/Scienta.java

//package ch.psi.pshell.epics;
import ch.psi.pshell.epics.*;
import ch.psi.pshell.device.AccessType;
import ch.psi.pshell.device.ArrayCalibration;
import ch.psi.pshell.device.CameraImageDescriptor;
import ch.psi.pshell.device.MatrixCalibration;
import ch.psi.pshell.device.Device;
import ch.psi.pshell.device.DeviceAdapter;
import ch.psi.pshell.device.Readable.ReadableCalibratedArray;
import ch.psi.utils.Arr;
import java.io.IOException;
import java.util.ArrayList;
import java.util.List;
import java.util.logging.Level;

/**
 * Implementation of Scienta spectrometer analyser.
 */
public class Scienta extends ch.psi.pshell.epics.Scienta {
    final String channelCtrl;
    final ChannelDoubleArray spectrum, spectrumX;
            
    public Scienta(final String name, final String channelPrefix) {
        this(name, channelPrefix + ":cam1", channelPrefix + ":image1");
    }

    public Scienta(String name, String channelCtrl, String channelData) {
        super(name, channelCtrl, channelData);
        this.channelCtrl=channelCtrl;
        
        //Device[] children = getChildren();
        //Arr.remove(children, getSpectrum());
        //setChildren(children);
        super.getSpectrum().close();
        
        spectrum = new ScientaSpectrum();
        getNumChannels().removeAllListeners();
        /*
        getNumChannels().addListener(new DeviceAdapter() {
            @Override
            public void onValueChanged(Device device, Object value, Object former) {
                try {
                    if (value != null) {
                        spectrum.setSize((Integer) value);
                    }
                } catch (IOException ex) {
                    getLogger().log(Level.WARNING, null, ex);
                }
            }
        });
        */
        addChild(spectrum);
        
       spectrumX = new ChannelDoubleArray("Spectrum X", "X03DA-SCIENTA:cam1:CHANNEL_SCALE_RBV");
       addChild(spectrumX);
    }


    @Override
    protected void doInitialize() throws IOException, InterruptedException {
        super.doInitialize();
        spectrum.setSize(ChannelDoubleArray.KEEP_TO_VALID);
        spectrumX.setSize(ChannelDoubleArray.KEEP_TO_VALID);
    }

    
    @Override
    protected void doSetSimulated() {
        super.doSetSimulated();
        setCache(spectrum, new double[100]);
    }

    @Override
    protected void doUpdate() throws IOException, InterruptedException {
        super.doUpdate();
    }

    @Override
    protected void doSetMonitored(boolean value) {
        super.doSetMonitored(value);
    }

    @Override
    protected CameraImageDescriptor doReadImageDescriptor() throws IOException, InterruptedException {
        CameraImageDescriptor ret = super.doReadImageDescriptor();
        return ret;
    }

    //Progress    
    //Disconnected operations
    @Override
    public double getProgress() {
        return super.getProgress();
    }
    
    
    public class ScientaSpectrum extends ChannelDoubleArray implements ReadableCalibratedArray<double[]> {

        ScientaSpectrum() {
            super(Scienta.this.getName() + " spectrum", channelCtrl + ":INT_SPECTRUM", 8, 200, false);
            setAccessType(AccessType.Read);
        }

        /*
        @Override
        protected double[] doRead() throws IOException, InterruptedException {
            //getNumChannels().getValue();
            setSizeToValidElements();
            return super.doRead();
        }
        */
        

        @Override
        public ArrayCalibration getCalibration() {
            double scale = 1.0;
            double offset = 0.0;
            try {
                List<Double> channelRange = getChannelRange();
                Double cb = channelRange.get(0);
                Double ce = channelRange.get(1);
                //scale = (ce - cb) / Math.max(getNumChannels().getValue()- 1, 1);
                scale = (ce - cb) / Math.max(take().length - 1, 1);
                offset = cb;
            } catch (Exception ex) {
            }
            return new ArrayCalibration(scale, offset);
        }
    }    

    @Override
    public double[] getSpectrumX() throws IOException, InterruptedException {
        /*
        List<Double> range = getChannelRange();
        Double begin = range.get(0);
        Double end = range.get(1);
        double[] spectrum = getSpectrum().take();
        if ((begin == null) || (end == null) || (spectrum == null)) {
            return null;
        }
        int spectrumSize = spectrum.length;
        double step = (end - begin) / (spectrumSize - 1);
        double[] x = new double[spectrumSize];
        for (int i = 0; i < spectrumSize; i++) {
            x[i] = begin + step * i;
        }
        return x;
        */
        //spectrumX.setSizeToValidElements();
        return spectrumX.read();
    }

    @Override
    public List<Double> getChannelRange() throws IOException, InterruptedException {
        ArrayList<Double> ret = new ArrayList<>();
        ret.add(getChannelBegin().getValue());
        ret.add(getChannelEnd().getValue());
        /*
        switch (getAcquisitionMode()) {
            case Swept:
                ret.add(getLowEnergy().getValue());
                ret.add(getHighEnergy().getValue());
                break;
            case Fixed:
            default:
                double eCenter = getCenterEnergy().getValue();
                int ePass = getPassEnergy();
                double xe = 0.04464;
                double xn = 0.04464;
                ret.add(eCenter - xe * ePass);
                ret.add(eCenter + xn * ePass);
                break;

        }
        */        
        return ret;
    }

    @Override
    public List<Double> getSliceRange() throws IOException, InterruptedException {
        ArrayList<Double> ret = new ArrayList<>();
        //ret.add(sliceBegin.getValue());
        //ret.add(sliceEnd.getValue()); 
        try{
            switch (getLensMode()) {
                case Angular45:
                    ret.add(-28.148);
                    ret.add(27.649);
                    break;
                case Angular60:
                    ret.add(-34.736);
                    ret.add(34.119);
                    break;
                case Transmission:
                default:
                    ret.add(-2.332);
                    ret.add(2.291);
                    break;

            }
        } catch (Exception ex){
            ret.add(Double.NaN);
            ret.add(Double.NaN);
        }
        return ret;
    }
    
    @Override
    public ChannelDoubleArray getSpectrum() {
        return spectrum;
    }    
}