from ijutils import *
import java.awt.Color as Color

            
#ip = load_array(img.getData().getMatrix())
ip = load_image(img.getOutput())
#ip = load_image("{images}/test3.png", title="Image")


aux = grayscale(ip, in_place=False)
aux.show()

#convolve(aux, KERNEL_SOBEL); aux.repaintWindow()

invert(aux); aux.repaintWindow()
subtract_background(aux); aux.repaintWindow()
auto_threshold(aux); aux.repaintWindow()
binary_open(aux); aux.repaintWindow()

(table, image) = analyse_particles(aux, 250,1000, 
            fill_holes = False, exclude_edges = True,print_table=True,
            output_image = "outlines", minCirc = 0.82, maxCirc = 1.0)

image.show()