root = "2017/05/04/20170504_182411_WireScan.h5|/" wire = "x" blms = ["",""] for i in range (cycles): for j in range(len(blms)): path_back = root + "background/blm" + str(j+1) bg = get_attributes(path_back)["Mean"] path = root + wire+"_" + ("%04d" % (i+1)) + "/blm" + str(j+1) d = load_data(path) print "d=", d d = blm_remove_spikes(d) if bkg_mean is not None: d = [v-bg for v in d] [com, rms] = profile_rms_stats(x, nor,noise_std=0, n_sigma=3.5) #set_attribute(path, "RMS", rms) #set_attribute(path, "RMS centroid", com) print i, j, [com, rms] [off, amp, com, sigma] = profile_gauss_stats(x, nor, off=None, amp=None, com=None, sigma=None) #set_attribute(path, "Gauss COM", com) #set_attribute(path, "Gauss Sigma", sigma) print i, j, [off, amp, com, sigma]