import traceback is_panel = get_exec_pars().source != CommandSource.ui #Must be checked before callin "run" run("Devices/Elements") run("Devices/WireScanner") run("Diagnostics/sig_process_wrapper") #Paramter parsing prefix = args[0] if is_panel else "S10CB07-DWSC440" #"SINDI01-DWSC090" scan_type = args[1] if is_panel else WireScanner.WireX1 scan_range = args[2] if is_panel else [-200, 200, -200, 200] cycles = args[3] if is_panel else 2 velocity = args[4] if is_panel else 200 bpms = args[5] if is_panel else get_wire_scanners_bpms(prefix) blms = args[6] if is_panel else get_wire_scanners_blms(prefix) bkgrd = args[7] if is_panel else 5 plt = args[8] if is_panel else plot(None, title = "Wire Scan")[0] save_raw = args[9] if is_panel else True bunch = args[10] if is_panel else 1 do_elog = False if (plt is None) else (True if is_panel else True) print "WireScan parameters: ", prefix, scan_type, scan_range, cycles, velocity, bpms, blms, bkgrd, bunch SET_BLM_WS_MODE = False SET_BLM_WS_SETTLING_TIME = 2.0 BPM_SENSORS = [("x","X"+str(bunch)), ("y","Y"+str(bunch)), ("q","Q"+str(bunch))] #(logic name suffix, channel suffix) #Plot setup if plt is not None: plt.clear() plt.removeMarker(None) plt.getAxis(plt.AxisId.X).setLabel("Position"); plt.getAxis(plt.AxisId.Y).setLabel(""); plt.getAxis(plt.AxisId.Y2).setLabel(""); plt.setLegendVisible(True); snapshots = [] #Creating WireScanner object print "Creating scanner..." if prefix not in get_wire_scanners(): raise Exception("Invalid wire scan: " + prefix) scanner = WireScanner(prefix, scan_range, cycles, velocity, True) #List of stream channels channels = [("m_pos", scanner.motor_bs_readback.get_name()), ("cur_cycle", scanner.curr_cycl.get_name()), ("scanning", scanner.status_channels[0].get_name())] for i in range (len(blms)): channels.append (("blm" + str(i+1), blms[i] + ":B" + str(bunch) + "_LOSS")) if plt is not None: series = LinePlotSeries(blms[i], None, min(i+1, 2)) plt.addSeries(series) series.setLinesVisible(False) series.setPointSize(2) if save_raw: channels.append (("blm" + str(i+1) + "_raw" , blms[i] + ":LOSS_SIGNAL_RAW")) for i in range (len(bpms)): for sensor in BPM_SENSORS: channels.append (("bpm" + str(i+1) + "_" + sensor[0], bpms[i] + ":" + sensor[1])) #Metadata set_attribute("/", "Wire Scanner", prefix) set_attribute("/", "Scan Type", scan_type) set_attribute("/", "Range", scan_range) set_attribute("/", "Cycles", cycles) set_attribute("/", "Motor Velocity", velocity*math.sqrt(2)) set_attribute("/", "Wire Velocity", velocity) set_attribute("/", "Background Measures", bkgrd) set_attribute("/", "BPMs", bpms) set_attribute("/", "BLMs", blms) set_attribute("/", "Bunch", bunch) filename = get_exec_pars().path #Stream creation print "Starting stream..." st = Stream("pulse_id", dispatcher) for c in channels: if c[1].endswith("LOSS_SIGNAL_RAW"): st.addWaveform(c[0], c[1], int(100.0 / get_repetition_rate()), 0) else: st.addScalar(c[0], c[1], int(100.0 / get_repetition_rate()), 0) st.initialize() st.start() st.waitCacheChange(10000) #Wait stream be running before starting scan class Timestamp(Readable): def read(self): return st.getTimestamp() #Pseudo-device returning the wire position class w_pos(Readable): def read(self): return scanner.get_sel_wire_pos(st.getChild("m_pos").take()) #End of scan checking scan_complete, cur_cycle, wire = None, None, None def check_end_scan(record, scan): global scan_complete,cur_cycle if record[4]<1: print "Data aquisition completed" scan_complete=True scan.abort() record.cancel() #So it won't be saved else: position = record[0] if record[3] != cur_cycle: cur_cycle = record[3] get_context().dataManager.splitScanData(scan) #if plt is not None: for s in plt.getAllSeries(): s.clear() if plt is not None: for i in range (len(blms)): plt.getSeries(i).appendData(position, record[5 + i]) #Process background def do_background(): #Store Background if bkgrd>0: scanner.park(wait=True) set_exec_pars(group = "background") r = mscan (st, st.getReadables()[4:], bkgrd) for i in range(len(r.getReadables())): d = r.getReadable(i) try: path = get_exec_pars().group + "/"+ r.getReadables()[i].name set_attribute(path, "Mean", mean(d)) set_attribute(path, "Sigma", stdev(d) ) except: pass #Scan def do_scan(index): global scan_complete, cur_cycle, wire wire = "y" if (index==1) or (scan_type in [WireScanner.WireY1, WireScanner.WireY2]) else "x" set_exec_pars(group=wire+"_{count}", reset=True) scanner.set_selection(get_scan_selection(scan_type, index)) if plt is not None: if wire == "x": plt.getAxis(plt.AxisId.X).setRange(scan_range[0], scan_range[1]) else: plt.getAxis(plt.AxisId.X).setRange(scan_range[2], scan_range[3]) scanner.init(wait=True) scanner.curr_cycl.write(0) scan_complete=False cur_cycle = 1.0 if plt is not None: for s in plt.getAllSeries(): s.clear() plt.removeMarker(None) try: scanner.scan() #scanner.waitState(State.Busy, 60000) Not needed as stream filter will make the wait st.getChild("scanning").waitValue(1.0, 10000) #print st.getValues() #TODO: Check what the problem is #mscan (st, [w_pos(),] + st.getReadables() + [Timestamp(),], -1, -1, take_initial = True, after_read = check_end_scan) l=[w_pos()] ; l.extend(st.getReadables()); l.append(Timestamp()) mscan (st, l, -1, -1, take_initial = True, after_read = check_end_scan) #tscan([w_pos()] + st.getReadables() + [Timestamp(),], 10, 0.5) except: print sys.exc_info()[1] if not scanner.isReady(): print "Aborting scan" scanner.abort() if not scan_complete: raise finally: #Combining data of multiple series #s=plt.getSeries(0) #indexes = sorted(range(len(s.x)),key=lambda x:s.x[x]) #x,y = [s.x[x] for x in indexes], [s.y[x] for x in indexes] #plot(y, xdata = x) calculate() img_file = os.path.abspath(filename + "_" + get_exec_pars().group[0:1] + ".png") time.sleep(0.1) #Give some time to plot finish (async) if plt is not None: plt.saveSnapshot(img_file, "png") snapshots.append(img_file) msg = "" ret = [] def calculate(): global msg stats = [] for i in range(len(blms)): msg += "Wire " + wire + " - BLM " + str(i+1) + ":\n" try: bg = get_attributes("background/blm" + str(i+1))["Mean"] if bkgrd>0 else 0.0 samples = [[], [], [], []] for cycle in range (cycles): pos_path = wire+"_" + ("%04d" % (cycle+1)) + "/w_pos" pos = load_data(pos_path) path = wire+"_" + ("%04d" % (cycle+1)) + "/blm" + str(i+1) data = load_data(path) sp = data #blm_remove_spikes(data) sig = sp if bg is None else [v-bg for v in sp] #print [com, rms] [off, amp, com, sigma] = profile_gauss_stats(pos, sig, off=None, amp=None, com=None, sigma=None) set_attribute(path, "Gauss COM", float("nan") if (com is None) else com) set_attribute(path, "Gauss Sigma", float("nan") if (sigma is None) else sigma) #[rms_com, rms_sigma] = profile_rms_stats(pos, sig,noise_std=0, n_sigma=3.5) [rms_com, rms_sigma] = profile_rms_stats_with_estimate(pos, sig, com_estimate = com, window_size = sigma * 3.5) set_attribute(path, "RMS COM", float("nan") if (rms_com is None) else rms_com) set_attribute(path, "RMS Sigma", float("nan") if (rms_sigma is None) else rms_sigma) samples[0].append(rms_com);samples[1].append(rms_sigma);samples[2].append(com);samples[3].append(sigma) #print [off, amp, com, sigma] #from mathutils import Gaussian #g = Gaussian(amp, com, sigma) #gauss = [g.value(v)+off for v in pos] #plot([data, sp, sig, gauss], ["data", "sp", "signal", "gauss", ], xdata = pos, title="Fit blm" + str(i+1) + " - " + str(cycle+1)) ret.extend([rms_com, rms_sigma, com, sigma, get_exec_pars().path + "|"+ pos_path, get_exec_pars().path + "|"+ path]) stats.append([]) for sample in samples: sample = [v for v in sample if v is not None] stats[i].append( (mean(sample), stdev(sample)) if len(sample)>0 else (float("nan"), float("nan")) ) if plt is not None: plt.addMarker(stats[i][2][0], None, "Gcom=" + "%.2f" % stats[i][2][0], plt.getSeries(i).color) plt.addMarker(stats[i][0][0], None, "Rcom=" + "%.2f" % stats[i][0][0], plt.getSeries(i).color.brighter()) msg += " RMS COM: " + "%.4f" % stats[i][0][0] + " +- " +"%.4f" % stats[i][0][1] + "\n" #unichr(0x03C3) + "=" msg += " RMS Sigma: " + "%.4f" % stats[i][1][0] + " +- " + "%.4f" % stats[i][1][1] + "\n" msg += " Gauss COM: " + "%.4f" % stats[i][2][0] + " +- " + "%.4f" % stats[i][2][1] + "\n" msg += " Gauss Sigma: " + "%.4f" % stats[i][3][0] + " +- " + "%.4f" % stats[i][3][1] + "\n" except Exception, e: print >> sys.stderr, traceback.format_exc() msg += str(e)+ "\n" def get_scan_time(): global bkgrd, scan_type, scan_range, velocity _range = 0 if not scan_type in [WireScanner.WireY1, WireScanner.WireY2]: _range += abs(scan_range[0] - scan_range[1]) #X SCAN if not scan_type in [WireScanner.WireX1, WireScanner.WireX2]: _range += abs(scan_range[2] - scan_range[3]) #Y SCAN ret = _range / velocity ret += 2.0 #ACC/DEC ret += bkgrd * (1.0/get_repetition_rate()) #BACK print "Scan time = " + str(ret), ret = ret * 2.0 + 10.0 #Tolernces print "; with tolerance = " + str(ret), return ret print "Starting scan..." try: if SET_BLM_WS_MODE and len(blms)>0: start_blm_ws(blms[0], get_scan_time()) #TODO: Wait for stream variable indicate bllm is in ws mode time.sleep(SET_BLM_WS_SETTLING_TIME) do_background() st.setFilter(scanner.curr_cycl.get_name() + ">0") #scanner.status_channels[0].get_name() + ">0" not used because we must the transition to know when the finished do_scan(0) if scan_type in [WireScanner.Set1, WireScanner.Set2]: do_scan(1) finally: if SET_BLM_WS_MODE and len(blms)>0: stop_blm_ws(blms[0]) print "Closing scanner" scanner.close() print "Closing stream" st.close() print msg # save the entry in the logbook if do_elog: if get_option("Generated data file:\n" + filename +"\n\n" + msg + "\n\n" + "Save to ELOG?", "YesNo") == "Yes": log_msg = "Data file: " + filename log_msg = log_msg + "\nWire Scanner: " + prefix log_msg = log_msg + "\nScan Type: " + str(scan_type) log_msg = log_msg + "\nRange: " + str(scan_range) log_msg = log_msg + "\nCycles: " + str(cycles) log_msg = log_msg + "\nWire Velocity: " + str(velocity) log_msg = log_msg + "\nBackground Measures: " + str(bkgrd) log_msg = log_msg + "\nBPMs: " + str(bpms) log_msg = log_msg + "\nBLMs: " + str(blms) log_msg = log_msg + "\nBunch: " + str(bunch) log_msg = log_msg + "\n" + msg elog("Wire Scan", log_msg, snapshots) set_exec_pars(open=False) set_return(ret)