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sfop
2017-07-04 10:19:29 +02:00
parent 719b4e30ea
commit d50672dfae
17 changed files with 170 additions and 132 deletions
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133
plugins/ScreenPanel.java
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@@ -132,31 +132,39 @@ public class ScreenPanel extends Panel {
double[] getCamtoolDoubleArray(String name) {
return (double[]) Convert.toDouble(((Camtool) camera).getValue(name));
}
Double getCamtoolDouble(String name, StreamValue cache) {
return (Double) Convert.toDouble(cache.__getitem__(name));
}
double[] getCamtoolDoubleArray(String name, StreamValue cache) {
return (double[]) Convert.toDouble(cache.__getitem__(name));
}
class ImageData {
ImageData(){
if (camera instanceof Camtool) {
cache = ((Camtool) camera).getStream().take();
StreamValue cache = ((Camtool) camera).getStream().take();
String prefix = goodRegion ? "gr_" : "";
x_fit_mean = getDouble(prefix + "x_fit_mean");
y_fit_mean = getDouble(prefix + "y_fit_mean");
x_fit_standard_deviation = getDouble(prefix + "x_fit_standard_deviation");
y_fit_standard_deviation = getDouble(prefix + "y_fit_standard_deviation");
x_fit_gauss_function = getDoubleArray(prefix +"x_fit_gauss_function");
y_fit_gauss_function = getDoubleArray(prefix +"y_fit_gauss_function");
x_profile = getDoubleArray("x_profile");
y_profile = getDoubleArray("y_profile");
x_center_of_mass = getDouble("x_center_of_mass");
y_center_of_mass = getDouble("y_center_of_mass");
x_rms = getDouble("x_rms");
y_rms = getDouble("y_rms");
x_fit_mean = getCamtoolDouble(prefix + "x_fit_mean", cache);
y_fit_mean = getCamtoolDouble(prefix + "y_fit_mean", cache);
x_fit_standard_deviation = getCamtoolDouble(prefix + "x_fit_standard_deviation", cache);
y_fit_standard_deviation = getCamtoolDouble(prefix + "y_fit_standard_deviation", cache);
x_fit_gauss_function = getCamtoolDoubleArray(prefix +"x_fit_gauss_function", cache);
y_fit_gauss_function = getCamtoolDoubleArray(prefix +"y_fit_gauss_function", cache);
x_profile = getCamtoolDoubleArray("x_profile", cache);
y_profile = getCamtoolDoubleArray("y_profile", cache);
x_center_of_mass = getCamtoolDouble("x_center_of_mass", cache);
y_center_of_mass = getCamtoolDouble("y_center_of_mass", cache);
x_rms = getCamtoolDouble("x_rms", cache);
y_rms = getCamtoolDouble("y_rms", cache);
if (goodRegion){
double[] gX2 = new double[x_profile.length];
Arrays.fill(gX2, Double.NaN);
try{
double x = getDoubleArray("gr_x_axis")[0];
double x = getCamtoolDoubleArray("gr_x_axis", cache)[0];
System.arraycopy(x_fit_gauss_function, 0, gX2, (int) ((renderer.getCalibration() != null) ? renderer.getCalibration().convertToImageX(x): x), x_fit_gauss_function.length);
} catch (Exception ex){
}
@@ -164,7 +172,7 @@ public class ScreenPanel extends Panel {
double[] gY2 = new double[y_profile.length];
Arrays.fill(gY2, Double.NaN);
try{
double y = getDoubleArray("gr_y_axis")[0];
double y = getCamtoolDoubleArray("gr_y_axis", cache)[0];
System.arraycopy(y_fit_gauss_function, 0, gY2, (int) ((renderer.getCalibration() != null) ? renderer.getCalibration().convertToImageY(y): y), y_fit_gauss_function.length);
} catch (Exception ex){
}
@@ -183,17 +191,7 @@ public class ScreenPanel extends Panel {
public double[] x_profile;
public double[] x_fit_gauss_function;
public double[] y_profile;
public double[] y_fit_gauss_function;
StreamValue cache;
Double getDouble(String name) {
return (Double) Convert.toDouble(cache.__getitem__(name));
}
double[] getDoubleArray(String name) {
return (double[]) Convert.toDouble(cache.__getitem__(name));
}
public double[] y_fit_gauss_function;
}
@@ -206,6 +204,7 @@ public class ScreenPanel extends Panel {
}
final ArrayList<Frame> imageBuffer = new ArrayList();
Frame currentFrame;
int imageBufferLenght = 0;
Text imageBufferOverlay;
@@ -671,6 +670,12 @@ public class ScreenPanel extends Panel {
if (cameraName == null) {
return;
}
synchronized (imageBuffer) {
currentFrame = null;
imageBuffer.clear();
}
try {
String configFolder = (String) getContext().getClassByName("SfCamera").getMethod("getConfigFolder", new Class[]{}).invoke(null);
@@ -752,11 +757,11 @@ public class ScreenPanel extends Panel {
}
//renderer.setCalibration(camera.getCalibration());
if (!renderer.isPaused()) {
if (imageBufferLenght > 1) {
if (data != null) {
synchronized (imageBuffer) {
imageBuffer.add(new Frame(data));
if (data != null) {
synchronized (imageBuffer) {
currentFrame =new Frame(data);
if (imageBufferLenght > 1) {
imageBuffer.add(currentFrame);
if (imageBuffer.size() > imageBufferLenght) {
imageBuffer.remove(0);
}
@@ -1011,31 +1016,25 @@ public class ScreenPanel extends Panel {
Pen penCross = new Pen(new Color(192, 105, 0), 1);
ImageData getCurrentImageData(){
return getImageData(null);
Frame getCurrentFrame(){
if ((imageBufferLenght > 1) && (renderer.isPaused())) {
int index = ((int) pauseSelection.getValue()) - 1;
synchronized (imageBuffer) {
return (index < imageBuffer.size()) ? imageBuffer.get(index) : null;
}
}
return currentFrame;
}
ImageData getImageData(Data data){
ImageData id = null;
if (renderer.isPaused()) {
synchronized (imageBuffer) {
if (data == null){
int index = ((int) pauseSelection.getValue()) - 1;
if (index < imageBuffer.size()) {
data = imageBuffer.get(index).data;
}
}
for (Frame f : imageBuffer) {
if (f.data == data) {
id = f;
break;
}
Frame getFrame(Data data){
synchronized (imageBuffer) {
for (Frame f : imageBuffer) {
if (f.data == data) {
return f;
}
}
} else {
id = new ImageData();
}
return id;
}
return null;
}
Overlay[][] getFitOverlays(Data data) {
@@ -1054,7 +1053,7 @@ public class ScreenPanel extends Panel {
if ((useCamtoolStats) && (camera instanceof Camtool)) {
try {
ImageData id = getImageData(data);
ImageData id = getFrame(data);
if (id==null){
return null;
}
@@ -1573,22 +1572,23 @@ public class ScreenPanel extends Panel {
}
}
void writeFrameMetadata(String path, ImageData id) throws Exception{
void writeFrameMetadata(String path, Frame frame) throws Exception{
getContext().getDataManager().setAttribute("/", "Camera", String.valueOf(cameraName));
getContext().getDataManager().setAttribute("/", "Screen", String.valueOf(valueScreen.getLabel().getText()));
getContext().getDataManager().setAttribute("/", "Filter", String.valueOf(valueFilter.getLabel().getText()));
Calibration cal = renderer.getCalibration();
getContext().getDataManager().setAttribute("/", "Calibration", cal == null ? new double[]{1,1,0,0} :
new double[]{cal.getScaleX(), cal.getScaleY(), cal.getOffsetX(), cal.getOffsetY()});
new double[]{cal.getScaleX(), cal.getScaleY(), cal.getOffsetX(), cal.getOffsetY()});
getContext().getDataManager().setAttribute(path, "Timestamp", Chrono.getTimeStr(frame.data.getTimestamp(), "HH:mm:ss.SSS"));
if (camera instanceof Camtool){
try{
getContext().getDataManager().setAttribute("/", "ROI", ((Camtool) camera).getRoi());
} catch (Exception ex){
getContext().getDataManager().setAttribute("/", "ROI", new int[]{0,0,-1,-1});
}
if (id!=null){
if (frame!=null){
for (Field f:ImageData.class.getFields()){
Object value = f.get(id);
Object value = f.get(frame);
getContext().getDataManager().setAttribute(path, f.getName(), (value == null) ? Double.NaN : value);
}
}
@@ -1607,16 +1607,17 @@ public class ScreenPanel extends Panel {
String path = "/data";
String snapshotFile = null;
synchronized (imageBuffer) {
ImageData id = getCurrentImageData();
//Object data = renderer.getData().getMatrix();
Object data = Convert.toBidimensional(id.getDoubleArray("image"),
//width & height are not always in the stream
renderer.getData().getWidth(), renderer.getData().getHeight());
getContext().getDataManager().setDataset(path, data, renderer.getData().isUnsigned());
Frame id = getCurrentFrame();
if (id==null){
throw new Exception("No current image");
}
Object data = id.data.getMatrix();
getContext().getDataManager().setDataset(path, data, id.data.isUnsigned());
writeFrameMetadata(path, id);
getContext().getDataManager().closeOutput();
getContext().getDataManager().closeOutput();
//Enforce the same timestamp to data & image files.
snapshotFile = getContext().getSetup().expandPath("{images}/{date}_{time}_snapshot.png", getContext().getExecutionPars().getStart());
//snapshotFile = getContext().getSetup().expandPath("{images}/{date}_{time}_snapshot.png", getContext().getExecutionPars().getStart());
snapshotFile = getContext().getExecutionPars().getPath() + ".png";
renderer.saveSnapshot(snapshotFile, "png", true);
}
@@ -1670,7 +1671,7 @@ public class ScreenPanel extends Panel {
Frame frame = imageBuffer.get(i);
String path = "/data_" + i;
getContext().getDataManager().setDataset(path, frame.data.getMatrix(), frame.data.isUnsigned());
writeFrameMetadata(path, getImageData(frame.data));
writeFrameMetadata(path, frame);
x.add(frame.x_fit_mean);
y.add(frame.y_fit_mean);
}