diff --git a/devices/CurrentCamera.properties b/devices/CurrentCamera.properties
index de18168..750d54e 100644
--- a/devices/CurrentCamera.properties
+++ b/devices/CurrentCamera.properties
@@ -1,7 +1,7 @@
-#Fri May 05 10:33:48 CEST 2017
+#Fri May 05 16:45:24 CEST 2017
colormap=Flame
colormapAutomatic=true
-colormapMax=500.0
+colormapMax=0.0
colormapMin=0.0
flipHorizontally=false
flipVertically=false
@@ -21,9 +21,9 @@ rotation=0.0
rotationCrop=false
scale=1.0
serverURL=localhost\:10000
-spatialCalOffsetX=-1258.4915971545392
-spatialCalOffsetY=-1136.5261706827648
-spatialCalScaleX=-8.47590344433861
-spatialCalScaleY=-8.583690365910144
+spatialCalOffsetX=-529.5211875760955
+spatialCalOffsetY=-459.5027453531823
+spatialCalScaleX=-7.617446794181035
+spatialCalScaleY=-7.774538405753697
spatialCalUnits=mm
transpose=false
diff --git a/devices/WireScanner motor.properties b/devices/WireScanner motor.properties
index ff19fac..4429cbd 100644
--- a/devices/WireScanner motor.properties
+++ b/devices/WireScanner motor.properties
@@ -1,4 +1,4 @@
-#Thu May 04 18:12:02 CEST 2017
+#Fri May 05 16:27:17 CEST 2017
defaultSpeed=282.842712474619
estbilizationDelay=0
hasEnable=false
diff --git a/plugins/WireScan.form b/plugins/WireScan.form
index f186818..cbf48e8 100644
--- a/plugins/WireScan.form
+++ b/plugins/WireScan.form
@@ -20,11 +20,6 @@
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diff --git a/plugins/WireScan.java b/plugins/WireScan.java
index 97a2f5a..e0b5782 100644
--- a/plugins/WireScan.java
+++ b/plugins/WireScan.java
@@ -241,7 +241,6 @@ public class WireScan extends Panel {
private void initComponents() {
comboWireScanner = new javax.swing.JComboBox();
- jLabel1 = new javax.swing.JLabel();
jLabel2 = new javax.swing.JLabel();
comboScanType = new javax.swing.JComboBox();
jLabel3 = new javax.swing.JLabel();
@@ -288,6 +287,9 @@ public class WireScan extends Panel {
comboBlm2 = new javax.swing.JComboBox();
comboBlm1 = new javax.swing.JComboBox();
jLabel18 = new javax.swing.JLabel();
+ jLabel19 = new javax.swing.JLabel();
+ spinnerBackground = new javax.swing.JSpinner();
+ jLabel20 = new javax.swing.JLabel();
comboWireScanner.addActionListener(new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
@@ -295,11 +297,8 @@ public class WireScan extends Panel {
}
});
- jLabel1.setHorizontalAlignment(javax.swing.SwingConstants.TRAILING);
- jLabel1.setText("Wire Scanner:");
-
jLabel2.setHorizontalAlignment(javax.swing.SwingConstants.TRAILING);
- jLabel2.setText("Scan Type");
+ jLabel2.setText("Scan Type:");
comboScanType.addActionListener(new java.awt.event.ActionListener() {
public void actionPerformed(java.awt.event.ActionEvent evt) {
@@ -432,6 +431,14 @@ public class WireScan extends Panel {
jLabel18.setHorizontalAlignment(javax.swing.SwingConstants.TRAILING);
jLabel18.setText("BLM 1:");
+ jLabel19.setHorizontalAlignment(javax.swing.SwingConstants.TRAILING);
+ jLabel19.setText("Background:");
+
+ spinnerBackground.setModel(new javax.swing.SpinnerNumberModel(50, 0, 1000, 1));
+
+ jLabel20.setHorizontalAlignment(javax.swing.SwingConstants.TRAILING);
+ jLabel20.setText("Wire Scanner:");
+
javax.swing.GroupLayout layout = new javax.swing.GroupLayout(this);
this.setLayout(layout);
layout.setHorizontalGroup(
@@ -440,10 +447,6 @@ public class WireScan extends Panel {
.addContainerGap()
.addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
.addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.TRAILING, false)
- .addGroup(javax.swing.GroupLayout.Alignment.LEADING, layout.createSequentialGroup()
- .addComponent(jLabel1)
- .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
- .addComponent(comboWireScanner, 0, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE))
.addGroup(layout.createSequentialGroup()
.addComponent(buttonPark)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
@@ -452,52 +455,6 @@ public class WireScan extends Panel {
.addComponent(buttonScan)
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
.addComponent(buttonAbort))
- .addGroup(javax.swing.GroupLayout.Alignment.LEADING, layout.createSequentialGroup()
- .addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
- .addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING, false)
- .addComponent(jLabel2, javax.swing.GroupLayout.Alignment.TRAILING, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
- .addComponent(jLabel3, javax.swing.GroupLayout.Alignment.TRAILING, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
- .addComponent(jLabel6, javax.swing.GroupLayout.Alignment.TRAILING, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
- .addComponent(jLabel10, javax.swing.GroupLayout.Alignment.TRAILING, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
- .addComponent(labelStartY, javax.swing.GroupLayout.Alignment.TRAILING, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
- .addComponent(jLabel18, javax.swing.GroupLayout.Alignment.TRAILING, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE))
- .addComponent(jLabel4, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
- .addComponent(jLabel5, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
- .addComponent(jLabel16, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
- .addComponent(jLabel17, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE))
- .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
- .addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
- .addComponent(comboScanType, 0, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
- .addComponent(comboBpm3, 0, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
- .addComponent(comboBpm1, 0, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
- .addComponent(comboBpm2, 0, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
- .addGroup(layout.createSequentialGroup()
- .addComponent(spinnerVel, javax.swing.GroupLayout.PREFERRED_SIZE, 104, javax.swing.GroupLayout.PREFERRED_SIZE)
- .addGap(18, 18, Short.MAX_VALUE)
- .addComponent(jLabel9)
- .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
- .addComponent(spinnerCycles))
- .addGroup(javax.swing.GroupLayout.Alignment.TRAILING, layout.createSequentialGroup()
- .addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.TRAILING)
- .addGroup(layout.createSequentialGroup()
- .addGap(0, 0, Short.MAX_VALUE)
- .addComponent(labelEndY))
- .addGroup(layout.createSequentialGroup()
- .addComponent(spinnerStartX)
- .addGap(18, 18, Short.MAX_VALUE)
- .addComponent(jLabel7)))
- .addGap(8, 8, 8)
- .addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
- .addComponent(spinnerEndX, javax.swing.GroupLayout.Alignment.TRAILING)
- .addComponent(spinnerEndY, javax.swing.GroupLayout.Alignment.TRAILING)))
- .addGroup(layout.createSequentialGroup()
- .addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
- .addComponent(spinnerStartY)
- .addComponent(panelStatus, javax.swing.GroupLayout.PREFERRED_SIZE, 324, javax.swing.GroupLayout.PREFERRED_SIZE))
- .addGap(0, 0, Short.MAX_VALUE))
- .addComponent(comboBlm3, 0, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
- .addComponent(comboBlm2, 0, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
- .addComponent(comboBlm1, 0, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)))
.addGroup(javax.swing.GroupLayout.Alignment.LEADING, layout.createSequentialGroup()
.addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.TRAILING)
.addComponent(jLabel15)
@@ -520,14 +477,64 @@ public class WireScan extends Panel {
.addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING, false)
.addComponent(buttonHoming, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
.addComponent(buttonScannerPanel, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
- .addComponent(buttonMotorPanel, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE))))
+ .addComponent(buttonMotorPanel, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)))
+ .addGroup(layout.createSequentialGroup()
+ .addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
+ .addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING, false)
+ .addComponent(jLabel2, javax.swing.GroupLayout.Alignment.TRAILING, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
+ .addComponent(jLabel3, javax.swing.GroupLayout.Alignment.TRAILING, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
+ .addComponent(jLabel6, javax.swing.GroupLayout.Alignment.TRAILING, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
+ .addComponent(jLabel10, javax.swing.GroupLayout.Alignment.TRAILING, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
+ .addComponent(labelStartY, javax.swing.GroupLayout.Alignment.TRAILING, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
+ .addComponent(jLabel18, javax.swing.GroupLayout.Alignment.TRAILING, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE))
+ .addComponent(jLabel4, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
+ .addComponent(jLabel5, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
+ .addComponent(jLabel16, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
+ .addComponent(jLabel17, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
+ .addComponent(jLabel20, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE))
+ .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
+ .addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
+ .addComponent(comboWireScanner, 0, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
+ .addComponent(comboScanType, 0, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
+ .addComponent(comboBpm3, 0, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
+ .addComponent(comboBpm1, 0, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
+ .addComponent(comboBpm2, 0, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
+ .addComponent(comboBlm3, 0, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
+ .addComponent(comboBlm2, 0, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
+ .addComponent(comboBlm1, 0, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
+ .addGroup(layout.createSequentialGroup()
+ .addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
+ .addComponent(spinnerStartY)
+ .addComponent(panelStatus, javax.swing.GroupLayout.PREFERRED_SIZE, 324, javax.swing.GroupLayout.PREFERRED_SIZE))
+ .addGap(0, 0, Short.MAX_VALUE))
+ .addGroup(javax.swing.GroupLayout.Alignment.TRAILING, layout.createSequentialGroup()
+ .addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.TRAILING)
+ .addGroup(layout.createSequentialGroup()
+ .addComponent(spinnerVel, javax.swing.GroupLayout.PREFERRED_SIZE, 104, javax.swing.GroupLayout.PREFERRED_SIZE)
+ .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED, javax.swing.GroupLayout.DEFAULT_SIZE, Short.MAX_VALUE)
+ .addComponent(jLabel9))
+ .addGroup(layout.createSequentialGroup()
+ .addComponent(spinnerStartX)
+ .addGap(18, 18, Short.MAX_VALUE)
+ .addComponent(jLabel7))
+ .addGroup(layout.createSequentialGroup()
+ .addGap(0, 0, Short.MAX_VALUE)
+ .addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.TRAILING)
+ .addComponent(jLabel19)
+ .addComponent(labelEndY))))
+ .addGap(8, 8, 8)
+ .addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.LEADING)
+ .addComponent(spinnerEndX, javax.swing.GroupLayout.Alignment.TRAILING)
+ .addComponent(spinnerEndY, javax.swing.GroupLayout.Alignment.TRAILING)
+ .addComponent(spinnerBackground, javax.swing.GroupLayout.Alignment.TRAILING, javax.swing.GroupLayout.PREFERRED_SIZE, 104, javax.swing.GroupLayout.PREFERRED_SIZE)
+ .addComponent(spinnerCycles, javax.swing.GroupLayout.Alignment.TRAILING))))))
.addComponent(jLabel8))
- .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.UNRELATED)
- .addComponent(plot, javax.swing.GroupLayout.DEFAULT_SIZE, 418, Short.MAX_VALUE)
+ .addGap(0, 0, 0)
+ .addComponent(plot, javax.swing.GroupLayout.DEFAULT_SIZE, 430, Short.MAX_VALUE)
.addGap(11, 11, 11))
);
- layout.linkSize(javax.swing.SwingConstants.HORIZONTAL, new java.awt.Component[] {jLabel1, jLabel10, jLabel11, jLabel13, jLabel14, jLabel2, jLabel3, jLabel4, jLabel5, jLabel6, jLabel7, jLabel8, jLabel9, labelEndY, labelStartY});
+ layout.linkSize(javax.swing.SwingConstants.HORIZONTAL, new java.awt.Component[] {jLabel10, jLabel11, jLabel13, jLabel14, jLabel2, jLabel3, jLabel4, jLabel5, jLabel6, jLabel7, jLabel8, jLabel9, labelEndY, labelStartY});
layout.linkSize(javax.swing.SwingConstants.HORIZONTAL, new java.awt.Component[] {buttonAbort, buttonMoveStart, buttonPark, buttonScan});
@@ -535,7 +542,7 @@ public class WireScan extends Panel {
layout.linkSize(javax.swing.SwingConstants.HORIZONTAL, new java.awt.Component[] {labelPosX, labelPosY, panelPosition, panelPosition1});
- layout.linkSize(javax.swing.SwingConstants.HORIZONTAL, new java.awt.Component[] {spinnerCycles, spinnerEndX, spinnerEndY});
+ layout.linkSize(javax.swing.SwingConstants.HORIZONTAL, new java.awt.Component[] {spinnerBackground, spinnerCycles, spinnerEndX, spinnerEndY});
layout.linkSize(javax.swing.SwingConstants.HORIZONTAL, new java.awt.Component[] {spinnerStartX, spinnerStartY, spinnerVel});
@@ -547,7 +554,7 @@ public class WireScan extends Panel {
.addGroup(layout.createSequentialGroup()
.addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
.addComponent(comboWireScanner, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
- .addComponent(jLabel1))
+ .addComponent(jLabel20))
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
.addComponent(comboScanType, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
@@ -561,6 +568,10 @@ public class WireScan extends Panel {
.addComponent(jLabel9)
.addComponent(spinnerVel, javax.swing.GroupLayout.PREFERRED_SIZE, 20, javax.swing.GroupLayout.PREFERRED_SIZE)))
.addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
+ .addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.BASELINE)
+ .addComponent(spinnerBackground, javax.swing.GroupLayout.PREFERRED_SIZE, javax.swing.GroupLayout.DEFAULT_SIZE, javax.swing.GroupLayout.PREFERRED_SIZE)
+ .addComponent(jLabel19))
+ .addPreferredGap(javax.swing.LayoutStyle.ComponentPlacement.RELATED)
.addGroup(layout.createParallelGroup(javax.swing.GroupLayout.Alignment.CENTER)
.addComponent(jLabel6)
.addComponent(jLabel7)
@@ -747,7 +758,7 @@ public class WireScan extends Panel {
}
}
parameters.add(blms);
- parameters.add(10); //BG
+ parameters.add(spinnerBackground.getValue());
parameters.add(plot);
try {
@@ -853,7 +864,6 @@ public class WireScan extends Panel {
private javax.swing.JComboBox comboBpm3;
private javax.swing.JComboBox comboScanType;
private javax.swing.JComboBox comboWireScanner;
- private javax.swing.JLabel jLabel1;
private javax.swing.JLabel jLabel10;
private javax.swing.JLabel jLabel11;
private javax.swing.JLabel jLabel12;
@@ -863,7 +873,9 @@ public class WireScan extends Panel {
private javax.swing.JLabel jLabel16;
private javax.swing.JLabel jLabel17;
private javax.swing.JLabel jLabel18;
+ private javax.swing.JLabel jLabel19;
private javax.swing.JLabel jLabel2;
+ private javax.swing.JLabel jLabel20;
private javax.swing.JLabel jLabel3;
private javax.swing.JLabel jLabel4;
private javax.swing.JLabel jLabel5;
@@ -880,6 +892,7 @@ public class WireScan extends Panel {
private ch.psi.pshell.swing.DeviceValuePanel panelPosition1;
private ch.psi.pshell.swing.DeviceValuePanel panelStatus;
private ch.psi.pshell.plot.LinePlotJFree plot;
+ private javax.swing.JSpinner spinnerBackground;
private javax.swing.JSpinner spinnerCycles;
private javax.swing.JSpinner spinnerEndX;
private javax.swing.JSpinner spinnerEndY;
diff --git a/script/Diagnostics/WireScan.py b/script/Diagnostics/WireScan.py
index cabc864..5523e81 100644
--- a/script/Diagnostics/WireScan.py
+++ b/script/Diagnostics/WireScan.py
@@ -24,6 +24,7 @@ print "WireScan parameters: ", prefix, scan_type, scan_range, cycles, cycles, bp
#Plot setup
plt.clear()
+plt.removeMarker(None)
plt.getAxis(plt.AxisId.X).setLabel("Position");
plt.getAxis(plt.AxisId.Y).setLabel("");
plt.getAxis(plt.AxisId.Y2).setLabel("");
@@ -134,8 +135,6 @@ def do_scan(index):
if not scan_complete:
raise
finally:
- #TODO: Display average of cycles
-
#Combining data of multiple series
#s=plt.getSeries(0)
#indexes = sorted(range(len(s.x)),key=lambda x:s.x[x])
@@ -163,9 +162,9 @@ def calculate():
sp = blm_remove_spikes(data)
sig = sp if bg is None else [v-bg for v in sp]
- [com, rms] = profile_rms_stats(pos, sig,noise_std=0, n_sigma=3.5)
+ [rms_com, rms] = profile_rms_stats(pos, sig,noise_std=0, n_sigma=3.5)
set_attribute(path, "RMS", float("nan") if (rms is None) else rms)
- set_attribute(path, "RMS centroid", float("nan") if (com is None) else com)
+ set_attribute(path, "RMS centroid", float("nan") if (rms_com is None) else rms_com)
#print [com, rms]
[off, amp, com, sigma] = profile_gauss_stats(pos, sig, off=None, amp=None, com=None, sigma=None)
set_attribute(path, "Gauss COM", float("nan") if (com is None) else com)
@@ -184,7 +183,7 @@ def calculate():
sample = [v for v in sample if v is not None]
stats[i].append( (mean(sample), stdev(sample)) if len(sample)>0 else (float("nan"), float("nan")) )
plt.addMarker(stats[i][2][0], None, "Gcom=" + "%.2f" % stats[i][2][0], plt.getSeries(i).color)
- plt.addMarker(stats[i][1][0], None, "Rcom=" + "%.2f" % stats[i][1][0], plt.getSeries(i).color)
+ plt.addMarker(stats[i][1][0], None, "Rcom=" + "%.2f" % stats[i][1][0], plt.getSeries(i).color.brighter())
msg += " RMS: " + "%.4f" % stats[i][0][0] + " " + unichr(0x03C3) + "=" + "%.4f" % stats[i][0][1] + "\n"
msg += " RMS COM: " + "%.4f" % stats[i][1][0] + " " + unichr(0x03C3) + "=" + "%.4f" % stats[i][1][1] + "\n"
diff --git a/script/Diagnostics/sig_process_wrapper.py b/script/Diagnostics/sig_process_wrapper.py
index 62b9020..9109bd0 100644
--- a/script/Diagnostics/sig_process_wrapper.py
+++ b/script/Diagnostics/sig_process_wrapper.py
@@ -7,22 +7,22 @@ def noise_evaluation(noise):
def blm_remove_spikes(x):
ret = call_jep(MODULE, "blm_remove_spikes", [to_npa(x),])
- return None if ret is None else ret.data
+ return ret if ret is None or is_list(ret) else ret.data
def blm_normalize(x, q):
ret = call_jep(MODULE, "blm_normalize", [to_npa(x), q])
- return None if ret is None else ret.data
+ return ret if ret is None or is_list(ret) else ret.data
def motor_to_wire_cs(pos, ctype = 'u', center_pos = 0.0):
return call_jep(MODULE, "motor_to_wire_cs", [pos, ctype, center_pos ])
def remove_beam_jitter(pos, bpm1, bpm2, d_b1_w=1, d_w_b2=1):
ret = call_jep(MODULE, "remove_beam_jitter", [to_npa(pos),to_npa(bpm1), to_npa(bpm2), d_b1_w, d_w_b2 ])
- return None if ret is None else ret.data
+ return ret if ret is None or is_list(ret) else ret.data
def profile_gauss_stats(x, y, off=None, amp=None, com=None, sigma=None):
ret = call_jep(MODULE, "profile_gauss_stats", [to_npa(x), to_npa(y), off, amp, com, sigma])
- return None if ret is None else ret.data
+ return ret if ret is None or is_list(ret) else ret.data
def profile_rms_stats(x, y, noise_std=0, n_sigma=3.5):
return call_jep(MODULE, "profile_rms_stats", [to_npa(x), to_npa(y), noise_std, n_sigma])
diff --git a/script/test/WireScanTest2.py b/script/test/WireScanTest2.py
index 556c894..db57a0a 100644
--- a/script/test/WireScanTest2.py
+++ b/script/test/WireScanTest2.py
@@ -1,6 +1,6 @@
run("Diagnostics/sig_process_wrapper")
-root = "2017/05/04/20170504_182411_WireScan.h5|/"
+root = "2017/05/05/20170505_123536_WireScan.h5|/" #"2017/05/04/20170504_182411_WireScan.h5|/"
wire = "x"
blms = ["",""]
cycles = 3
@@ -43,7 +43,7 @@ print stats
msg = ""
for i in range(len(blms)):
- msg += "BLM " + str(i) + ":\n"
+ msg += "Wire " + wire + " - BLM " + str(i) + ":\n"
msg += " RMS: " + "%.4f" % stats[i][0][0] + " " + unichr(0x03C3) + "=" + "%.4f" % stats[i][0][1] + "\n"
msg += " RMS COM: " + "%.4f" % stats[i][1][0] + " " + unichr(0x03C3) + "=" + "%.4f" % stats[i][1][1] + "\n"
msg += " Gauss COM: " + "%.4f" % stats[i][2][0] + " " + unichr(0x03C3) + "=" + "%.4f" % stats[i][2][1] + "\n"