Startup

script/SampleDetection.py

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+################################################################################################### 
+# Example of using ImageJ functionalities through ijutils.
+################################################################################################### 
+
+from ijutils import *
+import java.awt.Color as Color
+
+#Image Loading
+ip = load_image("{images}/test2.png", title="Image")
+
+aux = grayscale(ip, in_place=False)
+aux.show() 
+
+invert(aux); aux.repaintWindow()
+#gaussian_blur(aux); aux.repaintWindow()
+subtract_background(aux); aux.repaintWindow()
+auto_threshold(aux); aux.repaintWindow()
+binary_open(aux); aux.repaintWindow()
+#binary_fill_holes(aux); aux.repaintWindow()
+(results,output_img)=analyse_particles(aux, 250,1000, 
+            fill_holes = False, exclude_edges = True,print_table=True,
+            output_image = "outlines", minCirc = 0.7, maxCirc = 1.0)
+output_img.show()