import ch.psi.pshell.imaging.Filter as Filter from ch.psi.pshell.imaging.Utils import * from ch.psi.pshell.imaging.Overlays import * import ch.psi.pshell.imaging.Pen as Pen run("pip") renderer = show_panel(tst) com_overlay = Crosshairs(Pen(java.awt.Color.WHITE), java.awt.Point(-1,-1), java.awt.Dimension(15,15)) renderer.clearOverlays() renderer.addOverlays([com_overlay,]) class MyFilter(Filter): def process(self, image, data): aux = rescale(image, 1.0, -20, False) ip = ImagePlus("Img", aux) stats = get_statistics(ip,Measurements.CENTER_OF_MASS | Measurements.CENTROID ) (x,y) = (stats.xCenterOfMass, stats.yCenterOfMass) print x,y com_overlay.update(java.awt.Point(int(x),int(y))) return image tst.setFilter(MyFilter()) tst.refresh()