import traceback
run ("imaging/sim")

show=True



stack = load_test_stack(show=False)
shifts= load_shifts("{images}/TestObjAligner/shifts.mat")

   
if show:        
    ret.show()
    ret.updateAndDraw()
#stack = load_test_stack(show=True)
#get_context().getPluginManager().loadInitializePlugin("Align_TranslationFilter.java")
#translation_filter = get_context().getClassByName("Align_TranslationFilter").newInstance()
#shifts= load_shifts("{images}/TestObjAligner/shifts.mat")

"""
translation_filter.shifts = shifts
pfr = PlugInFilterRunner(translation_filter, "", "" )
ret = translation_filter.output
if show:        
    ret.show()
    ret.updateAndDraw()
#stack = load_test_stack(show=False)
#r=translate(stack, shifts, True, java_code=True)        
"""


#translate(stack, shifts, show=True, java_code=True)