script/test/TstImgSim.py

@@ -0,0 +1,43 @@
+run ("imaging/sim")
+    
+stack = load_test_stack(show=True)
+ipr, ipi = complex_edge_filtering(stack, complex=True, g_sigma = 3.0, show=False) 
+
+
+#complex_edge_filter = get_context().getClassByName("Align_ComplexEdgeFiltering").newInstance()
+#translation_filter = get_context().getClassByName("Align_TranslationFilter2").newInstance()
+#compute_shifts_filter = get_context().getClassByName("Align_ComputeShifts2").newInstance()
+
+"""
+ip_list = []
+for index in range(40,49):
+    ip_list.append(open_image(expand_path("{images}/TestObjAligner/i210517_0" + str(index) + "#001.tif")))
+stack =  create_stack(ip_list, title = "Test")
+stack.show()
+
+complex_edge_filter.setup("2,True,False", stack)   #Gaussian blur radius, Complex (True) or Real (False), show dialog = False
+complex_edge_filter.r"un(stack.getProcessor())
+imp_r, imp_i = complex_edge_filter.output
+
+#imp_r.show()
+#imp_i.show()
+roi=Roi(258,0,256,256)
+compute_shifts_filter.setup(10, False, ipr, ipi, 1, roi)
+compute_shifts_filter.run(None)
+shifts = compute_shifts_filter.shifts
+
+translation_filter.shifts = shifts
+translation_filter.setup("",stack)
+translation_filter.run(stack.getProcessor())
+
+translation_filter.registred.show();
+translation_filter.registred.updateAndDraw();
+
+"""
+
+roi=Roi(258,0,256,256)
+shifts = calculate_shifts(ipr, ipi, roi, 2)
+r=translate(stack, shifts, True)
+
+
+