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Script execution

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gobbo_a
2019-10-30 16:33:25 +01:00
parent b12fe624df
commit 1cbbf57f93
1 changed files with 23 additions and 16 deletions
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39
script/utils.py
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@@ -6,7 +6,7 @@ import java.awt.Rectangle as Rectangle
import ch.psi.pshell.imaging.Data as Data
def integrate(ips, roi=None, as_float=True):
def integrate(ips, as_float=True):
aux = None
for i in range(len(ips)):
if i==0:
@@ -16,22 +16,31 @@ def integrate(ips, roi=None, as_float=True):
return aux
def average (ips, roi=None, as_float=True):
aux = integrate(ips, roi, as_float)
aux = integrate(ips, as_float)
op_const(aux, "divide", float(len(ips)), in_place=True)
return aux
def grab_frames(source, samples, roi=None, wait_next=False):
def get_image(source, roi=None, wait_next=False):
if wait_next:
source.waitNext(-1)
ret = load_image(Utils.grayscale(source.output, Rectangle(roi[0], roi[1], roi[2], roi[3]) if (roi is not None) else None))
return ret
def grab_frames(source, samples, roi=None, wait_next=False, sleep=0):
frames = []
for i in range(samples):
aux = get_image(source)
if sleep>0:
time.sleep(sleep)
aux = get_image(source, roi, wait_next)
frames.append(aux)
return frames
def average_frames(source, samples = 1, roi=None, as_float=True):
return average(grab_frames(source, samples), roi, as_float)
def average_frames(source, samples=1, roi=None, wait_next=False, sleep=0, as_float=True):
return average(grab_frames(source, samples, roi, wait_next, sleep), as_float)
def integrate_frames(source, samples = 1, roi=None, as_float=True):
return integrate(grab_frames(source, samples), roi, as_float)
def integrate_frames(source, samples=1, roi=None, wait_next=False, sleep=0, as_float=True):
return integrate(grab_frames(source, samples, roi, wait_next, sleep), as_float)
def get_image_array(ip):
if type(av.getProcessor()) == ij.process.FloatProcessor:
@@ -39,16 +48,14 @@ def get_image_array(ip):
else:
return ip.getProcessor().getIntArray()
def get_image(source, roi=None, wait_next=False):
if wait_next:
source.waitNext(-1)
ret = load_image(Utils.grayscale(source.output, Rectangle(roi[0], roi[1], roi[2], roi[3]) if (roi is not None) else None))
return ret
ret = grab_frames(image, 10)
ret = grab_frames(image, 10, sleep=0.1)
av = average(ret, None, True)
print type(av.getProcessor())
#db=av.getBufferedImage().getData().getDataBuffer()
data = get_image_array(av)
plot(data)
data
save_image(av, "{images}/float.tif","tiff")
av = average(ret, None, False)
save_image(av, "{images}/int.tif","tiff")