import numpy as np from scipy.optimize import curve_fit import sys def gaus(x, a, x0, sigma, offset): return offset + a * np.exp(-(x - x0) ** 2 / (2 * sigma ** 2)) #Return [amp, mean_val, sigma, offset] def fit_energy(e_from, e_to, steps, num_shots, data): energy_range = np.linspace(e_from, e_to, steps) energy_range_fit = np.linspace(energy_range[0], energy_range[-1], len(energy_range)*10) centre_line_out = data[:,:,int(data.shape[2]/2)].mean(axis=1) try: popt,pcov = curve_fit(gaus,energy_range,centre_line_out,p0=[1,energy_range[np.argmax(centre_line_out)],energy_range.mean()*1e-3,1e3*num_shots]) except: raise Exception('Fit failed: spectrum might not be near scan range center \n' + str(sys.exc_info()[1])) #print('Fit failed: spectrum might not be near scan range center') #return None max_ind = np.argmax(centre_line_out) max_photon_energy=energy_range[max_ind] print(max_photon_energy) return popt, centre_line_out #Return [amp, mean_val, sigma, offset] def fit_crystal_height(xstal_from, xstal_to, steps, data): xstal_range = np.linspace(xstal_from, xstal_to, steps) projection = data.mean(axis=1).mean(axis=1) offset = np.mean(projection[0:100]) signal_centre = xstal_range[np.argmax(projection)] xstal_range_fit = np.linspace(xstal_range[0], xstal_range[-1], len(xstal_range)*10) try: popt,pcov = curve_fit(gaus,xstal_range,projection,p0=[100,signal_centre,-0.2,offset]) except: raise Exception('Fit failed: spectrum might not be near scan range center \n' + str(sys.exc_info()[1])) #print('Fit failed: spectrum might not be near scan range center') #return None return popt, projection def get_signal_centre(data, data_range): projection = data.mean(axis=1).mean(axis=1) signal_centre = data_range[np.argmax(projection)] return signal_centre, projection