update pshell explorer and data import, misc. improvements

FEATURES

- pshell: convert scienta data to true counts
- pre-process: add gauss2_reduction data reduction function
- anglescan: add set_contrast and normalize_strip_phi functions
- explorer: show info about multi-region scans
- documentation: add detailed instructions for angle-scan processing

BUGFIXES

- explorer: fix attributes notebook
- pshell: fix progress bar
- elog: increase the number of accepted attachments

doc/html/PageProjections.html

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doc/html/classes.html

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doc/html/fermi-edge-analysis_8ipf.html

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doc/html/fermi-edge-analysis_8ipf_source.html

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doc/html/files.html

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doc/html/functions.html

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doc/html/functions_vars.html

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doc/html/globals.html

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doc/html/globals_b.html

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doc/html/globals_c.html

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doc/html/globals_d.html

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doc/html/globals_e.html

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doc/html/globals_f.html

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doc/html/globals_func.html

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doc/html/globals_func_b.html

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doc/html/globals_func_c.html

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doc/html/globals_func_e.html

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doc/html/globals_func_f.html

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 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
   <ul>
-    <li class="footer">Generated on Tue Jul 4 2017 11:17:32 for PEARL Procedures by
+    <li class="footer">Generated on Thu Sep 21 2017 12:35:04 for PEARL Procedures by
     <a href="http://www.doxygen.org/index.html">
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doc/html/globals_func_g.html

@@ -32,7 +32,7 @@
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 </li>
+<li>gauss2_reduction()
+: <a class="el" href="pearl-scienta-preprocess_8ipf.html#af9ea97d870f53a70583c53328599ff14">pearl-scienta-preprocess.ipf</a>
+</li>
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 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
   <ul>
-    <li class="footer">Generated on Tue Jul 4 2017 11:17:32 for PEARL Procedures by
+    <li class="footer">Generated on Thu Sep 21 2017 12:35:04 for PEARL Procedures by
     <a href="http://www.doxygen.org/index.html">
     <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.11 </li>
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doc/html/globals_func_h.html

@@ -32,7 +32,7 @@
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@@ -159,7 +159,7 @@ $(document).ready(function(){initNavTree('globals_func_h.html','');});
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 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
   <ul>
-    <li class="footer">Generated on Tue Jul 4 2017 11:17:32 for PEARL Procedures by
+    <li class="footer">Generated on Thu Sep 21 2017 12:35:04 for PEARL Procedures by
     <a href="http://www.doxygen.org/index.html">
     <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.11 </li>
   </ul>

doc/html/globals_func_i.html

@@ -32,7 +32,7 @@
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@@ -193,7 +193,7 @@ $(document).ready(function(){initNavTree('globals_func_i.html','');});
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 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
   <ul>
-    <li class="footer">Generated on Tue Jul 4 2017 11:17:32 for PEARL Procedures by
+    <li class="footer">Generated on Thu Sep 21 2017 12:35:04 for PEARL Procedures by
     <a href="http://www.doxygen.org/index.html">
     <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.11 </li>
   </ul>

doc/html/globals_func_k.html

@@ -32,7 +32,7 @@
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    <div id="projectname">PEARL Procedures
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@@ -150,7 +150,7 @@ $(document).ready(function(){initNavTree('globals_func_k.html','');});
 <!-- start footer part -->
 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
   <ul>
-    <li class="footer">Generated on Tue Jul 4 2017 11:17:32 for PEARL Procedures by
+    <li class="footer">Generated on Thu Sep 21 2017 12:35:04 for PEARL Procedures by
     <a href="http://www.doxygen.org/index.html">
     <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.11 </li>
   </ul>

doc/html/globals_func_l.html

@@ -32,7 +32,7 @@
  <tr style="height: 56px;">
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    <div id="projectname">PEARL Procedures
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@@ -197,7 +197,7 @@ $(document).ready(function(){initNavTree('globals_func_l.html','');});
 <!-- start footer part -->
 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
   <ul>
-    <li class="footer">Generated on Tue Jul 4 2017 11:17:32 for PEARL Procedures by
+    <li class="footer">Generated on Thu Sep 21 2017 12:35:04 for PEARL Procedures by
     <a href="http://www.doxygen.org/index.html">
     <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.11 </li>
   </ul>

doc/html/globals_func_m.html

@@ -32,7 +32,7 @@
  <tr style="height: 56px;">
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    <div id="projectname">PEARL Procedures
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@@ -195,7 +195,7 @@ $(document).ready(function(){initNavTree('globals_func_m.html','');});
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 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
   <ul>
-    <li class="footer">Generated on Tue Jul 4 2017 11:17:32 for PEARL Procedures by
+    <li class="footer">Generated on Thu Sep 21 2017 12:35:04 for PEARL Procedures by
     <a href="http://www.doxygen.org/index.html">
     <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.11 </li>
   </ul>

doc/html/globals_func_n.html

@@ -32,7 +32,7 @@
  <tr style="height: 56px;">
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@@ -144,6 +144,9 @@ $(document).ready(function(){initNavTree('globals_func_n.html','');});
 <li>normalize_strip_2d()
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 </li>
+<li>normalize_strip_phi()
+: <a class="el" href="pearl-anglescan-process_8ipf.html#aaa734fddecdd75c7cabe20ba777b41b9">pearl-anglescan-process.ipf</a>
+</li>
 <li>normalize_strip_theta()
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 </li>
@@ -159,7 +162,7 @@ $(document).ready(function(){initNavTree('globals_func_n.html','');});
 <!-- start footer part -->
 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
   <ul>
-    <li class="footer">Generated on Tue Jul 4 2017 11:17:32 for PEARL Procedures by
+    <li class="footer">Generated on Thu Sep 21 2017 12:35:04 for PEARL Procedures by
     <a href="http://www.doxygen.org/index.html">
     <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.11 </li>
   </ul>

doc/html/globals_func_o.html

@@ -32,7 +32,7 @@
  <tr style="height: 56px;">
   <td id="projectalign" style="padding-left: 0.5em;">
    <div id="projectname">PEARL Procedures
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@@ -174,7 +174,7 @@ $(document).ready(function(){initNavTree('globals_func_o.html','');});
 <!-- start footer part -->
 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
   <ul>
-    <li class="footer">Generated on Tue Jul 4 2017 11:17:32 for PEARL Procedures by
+    <li class="footer">Generated on Thu Sep 21 2017 12:35:04 for PEARL Procedures by
     <a href="http://www.doxygen.org/index.html">
     <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.11 </li>
   </ul>

doc/html/globals_func_p.html

@@ -32,7 +32,7 @@
  <tr style="height: 56px;">
   <td id="projectalign" style="padding-left: 0.5em;">
    <div id="projectname">PEARL Procedures
-   &#160;<span id="projectnumber">rev-distro-1.4.0-0-g80a01f2</span>
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    <div id="projectbrief">Igor procedures for the analysis of PEARL data</div>
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@@ -246,6 +246,9 @@ $(document).ready(function(){initNavTree('globals_func_p.html','');});
 <li>prompt_func_params()
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 </li>
+<li>prompt_gauss2_reduction()
+: <a class="el" href="pearl-scienta-preprocess_8ipf.html#a79eb4d0d4902a549bf92553840b884e8">pearl-scienta-preprocess.ipf</a>
+</li>
 <li>prompt_hdf_options()
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-: <a class="el" href="pearl-pshell-import_8ipf.html#a8ab28d3f4ef308e33b8701e44172dbf8">pearl-pshell-import.ipf</a>
+: <a class="el" href="pearl-pshell-import_8ipf.html#a1dc6c971120749b378014f1f63cb6668">pearl-pshell-import.ipf</a>
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 <li>psh5_load_reduced()
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@@ -348,7 +351,7 @@ $(document).ready(function(){initNavTree('globals_func_p.html','');});
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 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
   <ul>
-    <li class="footer">Generated on Tue Jul 4 2017 11:17:32 for PEARL Procedures by
+    <li class="footer">Generated on Thu Sep 21 2017 12:35:04 for PEARL Procedures by
     <a href="http://www.doxygen.org/index.html">
     <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.11 </li>
   </ul>

doc/html/globals_func_q.html

@@ -32,7 +32,7 @@
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    <div id="projectname">PEARL Procedures
-   &#160;<span id="projectnumber">rev-distro-1.4.0-0-g80a01f2</span>
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    <div id="projectbrief">Igor procedures for the analysis of PEARL data</div>
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@@ -150,7 +150,7 @@ $(document).ready(function(){initNavTree('globals_func_q.html','');});
 <!-- start footer part -->
 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
   <ul>
-    <li class="footer">Generated on Tue Jul 4 2017 11:17:32 for PEARL Procedures by
+    <li class="footer">Generated on Thu Sep 21 2017 12:35:04 for PEARL Procedures by
     <a href="http://www.doxygen.org/index.html">
     <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.11 </li>
   </ul>

doc/html/globals_func_r.html

@@ -32,7 +32,7 @@
  <tr style="height: 56px;">
   <td id="projectalign" style="padding-left: 0.5em;">
    <div id="projectname">PEARL Procedures
-   &#160;<span id="projectnumber">rev-distro-1.4.0-0-g80a01f2</span>
+   &#160;<span id="projectnumber">rev-distro-1.4.0-1-g0a436db-dirty</span>
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@@ -182,7 +182,7 @@ $(document).ready(function(){initNavTree('globals_func_r.html','');});
 <!-- start footer part -->
 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
   <ul>
-    <li class="footer">Generated on Tue Jul 4 2017 11:17:32 for PEARL Procedures by
+    <li class="footer">Generated on Thu Sep 21 2017 12:35:04 for PEARL Procedures by
     <a href="http://www.doxygen.org/index.html">
     <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.11 </li>
   </ul>

doc/html/globals_func_s.html

@@ -32,7 +32,7 @@
  <tr style="height: 56px;">
   <td id="projectalign" style="padding-left: 0.5em;">
    <div id="projectname">PEARL Procedures
-   &#160;<span id="projectnumber">rev-distro-1.4.0-0-g80a01f2</span>
+   &#160;<span id="projectnumber">rev-distro-1.4.0-1-g0a436db-dirty</span>
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@@ -164,6 +164,9 @@ $(document).ready(function(){initNavTree('globals_func_s.html','');});
 <li>select_dataset()
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 </li>
+<li>set_contrast()
+: <a class="el" href="pearl-anglescan-process_8ipf.html#a666dab03bb2e97ffef81cea450184d42">pearl-anglescan-process.ipf</a>
+</li>
 <li>set_panel_attributes()
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@@ -245,7 +248,7 @@ $(document).ready(function(){initNavTree('globals_func_s.html','');});
 <!-- start footer part -->
 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
   <ul>
-    <li class="footer">Generated on Tue Jul 4 2017 11:17:32 for PEARL Procedures by
+    <li class="footer">Generated on Thu Sep 21 2017 12:35:04 for PEARL Procedures by
     <a href="http://www.doxygen.org/index.html">
     <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.11 </li>
   </ul>

doc/html/globals_func_t.html

@@ -32,7 +32,7 @@
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   <td id="projectalign" style="padding-left: 0.5em;">
    <div id="projectname">PEARL Procedures
-   &#160;<span id="projectnumber">rev-distro-1.4.0-0-g80a01f2</span>
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    <div id="projectbrief">Igor procedures for the analysis of PEARL data</div>
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 </li>
+<li>test_gauss2_reduction()
+: <a class="el" href="pearl-scienta-preprocess_8ipf.html#a57308c99b9e4dd48d139f6613a8a9f40">pearl-scienta-preprocess.ipf</a>
+</li>
 <li>test_int_linbg()
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@@ -168,7 +171,7 @@ $(document).ready(function(){initNavTree('globals_func_t.html','');});
 <!-- start footer part -->
 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
   <ul>
-    <li class="footer">Generated on Tue Jul 4 2017 11:17:32 for PEARL Procedures by
+    <li class="footer">Generated on Thu Sep 21 2017 12:35:04 for PEARL Procedures by
     <a href="http://www.doxygen.org/index.html">
     <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.11 </li>
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doc/html/globals_func_u.html

@@ -32,7 +32,7 @@
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   <td id="projectalign" style="padding-left: 0.5em;">
    <div id="projectname">PEARL Procedures
-   &#160;<span id="projectnumber">rev-distro-1.4.0-0-g80a01f2</span>
+   &#160;<span id="projectnumber">rev-distro-1.4.0-1-g0a436db-dirty</span>
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    <div id="projectbrief">Igor procedures for the analysis of PEARL data</div>
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@@ -180,7 +180,7 @@ $(document).ready(function(){initNavTree('globals_func_u.html','');});
 <!-- start footer part -->
 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
   <ul>
-    <li class="footer">Generated on Tue Jul 4 2017 11:17:32 for PEARL Procedures by
+    <li class="footer">Generated on Thu Sep 21 2017 12:35:04 for PEARL Procedures by
     <a href="http://www.doxygen.org/index.html">
     <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.11 </li>
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doc/html/globals_func_w.html

@@ -32,7 +32,7 @@
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   <td id="projectalign" style="padding-left: 0.5em;">
    <div id="projectname">PEARL Procedures
-   &#160;<span id="projectnumber">rev-distro-1.4.0-0-g80a01f2</span>
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    <div id="projectbrief">Igor procedures for the analysis of PEARL data</div>
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@@ -150,7 +150,7 @@ $(document).ready(function(){initNavTree('globals_func_w.html','');});
 <!-- start footer part -->
 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
   <ul>
-    <li class="footer">Generated on Tue Jul 4 2017 11:17:32 for PEARL Procedures by
+    <li class="footer">Generated on Thu Sep 21 2017 12:35:04 for PEARL Procedures by
     <a href="http://www.doxygen.org/index.html">
     <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.11 </li>
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doc/html/globals_g.html

@@ -32,7 +32,7 @@
  <tr style="height: 56px;">
   <td id="projectalign" style="padding-left: 0.5em;">
    <div id="projectname">PEARL Procedures
-   &#160;<span id="projectnumber">rev-distro-1.4.0-0-g80a01f2</span>
+   &#160;<span id="projectnumber">rev-distro-1.4.0-1-g0a436db-dirty</span>
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@@ -145,6 +145,9 @@ $(document).ready(function(){initNavTree('globals_g.html','');});
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 </li>
+<li>gauss2_reduction()
+: <a class="el" href="pearl-scienta-preprocess_8ipf.html#af9ea97d870f53a70583c53328599ff14">pearl-scienta-preprocess.ipf</a>
+</li>
 <li>get_default_panel_name()
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@@ -193,7 +196,7 @@ $(document).ready(function(){initNavTree('globals_g.html','');});
 <!-- start footer part -->
 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
   <ul>
-    <li class="footer">Generated on Tue Jul 4 2017 11:17:32 for PEARL Procedures by
+    <li class="footer">Generated on Thu Sep 21 2017 12:35:04 for PEARL Procedures by
     <a href="http://www.doxygen.org/index.html">
     <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.11 </li>
   </ul>

doc/html/globals_h.html

@@ -32,7 +32,7 @@
  <tr style="height: 56px;">
   <td id="projectalign" style="padding-left: 0.5em;">
    <div id="projectname">PEARL Procedures
-   &#160;<span id="projectnumber">rev-distro-1.4.0-0-g80a01f2</span>
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+    <li class="footer">Generated on Thu Sep 21 2017 12:35:04 for PEARL Procedures by
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doc/html/globals_i.html

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+    <li class="footer">Generated on Thu Sep 21 2017 12:35:04 for PEARL Procedures by
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doc/html/globals_k.html

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+    <li class="footer">Generated on Thu Sep 21 2017 12:35:04 for PEARL Procedures by
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doc/html/globals_l.html

@@ -32,7 +32,7 @@
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+    <li class="footer">Generated on Thu Sep 21 2017 12:35:04 for PEARL Procedures by
     <a href="http://www.doxygen.org/index.html">
     <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.11 </li>
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doc/html/globals_m.html

@@ -32,7 +32,7 @@
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+    <li class="footer">Generated on Thu Sep 21 2017 12:35:04 for PEARL Procedures by
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doc/html/globals_n.html

@@ -32,7 +32,7 @@
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+<li>normalize_strip_phi()
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-    <li class="footer">Generated on Tue Jul 4 2017 11:17:32 for PEARL Procedures by
+    <li class="footer">Generated on Thu Sep 21 2017 12:35:04 for PEARL Procedures by
     <a href="http://www.doxygen.org/index.html">
     <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.11 </li>
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doc/html/globals_o.html

@@ -32,7 +32,7 @@
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-    <li class="footer">Generated on Tue Jul 4 2017 11:17:32 for PEARL Procedures by
+    <li class="footer">Generated on Thu Sep 21 2017 12:35:04 for PEARL Procedures by
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     <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.11 </li>
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doc/html/globals_p.html

@@ -32,7 +32,7 @@
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+<li>prompt_gauss2_reduction()
+: <a class="el" href="pearl-scienta-preprocess_8ipf.html#a79eb4d0d4902a549bf92553840b884e8">pearl-scienta-preprocess.ipf</a>
+</li>
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+    <li class="footer">Generated on Thu Sep 21 2017 12:35:04 for PEARL Procedures by
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     <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.11 </li>
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doc/html/globals_q.html

@@ -32,7 +32,7 @@
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-    <li class="footer">Generated on Tue Jul 4 2017 11:17:32 for PEARL Procedures by
+    <li class="footer">Generated on Thu Sep 21 2017 12:35:04 for PEARL Procedures by
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doc/html/globals_r.html

@@ -32,7 +32,7 @@
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-    <li class="footer">Generated on Tue Jul 4 2017 11:17:32 for PEARL Procedures by
+    <li class="footer">Generated on Thu Sep 21 2017 12:35:04 for PEARL Procedures by
     <a href="http://www.doxygen.org/index.html">
     <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.11 </li>
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doc/html/globals_s.html

@@ -32,7 +32,7 @@
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+<li>set_contrast()
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 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
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-    <li class="footer">Generated on Tue Jul 4 2017 11:17:32 for PEARL Procedures by
+    <li class="footer">Generated on Thu Sep 21 2017 12:35:04 for PEARL Procedures by
     <a href="http://www.doxygen.org/index.html">
     <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.11 </li>
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doc/html/globals_t.html

@@ -32,7 +32,7 @@
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+<li>test_gauss2_reduction()
+: <a class="el" href="pearl-scienta-preprocess_8ipf.html#a57308c99b9e4dd48d139f6613a8a9f40">pearl-scienta-preprocess.ipf</a>
+</li>
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@@ -169,7 +172,7 @@ $(document).ready(function(){initNavTree('globals_t.html','');});
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 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
   <ul>
-    <li class="footer">Generated on Tue Jul 4 2017 11:17:32 for PEARL Procedures by
+    <li class="footer">Generated on Thu Sep 21 2017 12:35:04 for PEARL Procedures by
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     <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.11 </li>
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doc/html/globals_u.html

@@ -32,7 +32,7 @@
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 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
   <ul>
-    <li class="footer">Generated on Tue Jul 4 2017 11:17:32 for PEARL Procedures by
+    <li class="footer">Generated on Thu Sep 21 2017 12:35:04 for PEARL Procedures by
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doc/html/globals_v.html

@@ -32,7 +32,7 @@
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   <ul>
-    <li class="footer">Generated on Tue Jul 4 2017 11:17:32 for PEARL Procedures by
+    <li class="footer">Generated on Thu Sep 21 2017 12:35:04 for PEARL Procedures by
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doc/html/globals_vars.html

@@ -32,7 +32,7 @@
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+<li>kDetectorSensitivity
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 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
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-    <li class="footer">Generated on Tue Jul 4 2017 11:17:32 for PEARL Procedures by
+    <li class="footer">Generated on Thu Sep 21 2017 12:35:04 for PEARL Procedures by
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     <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.11 </li>
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doc/html/globals_w.html

@@ -32,7 +32,7 @@
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-    <li class="footer">Generated on Tue Jul 4 2017 11:17:32 for PEARL Procedures by
+    <li class="footer">Generated on Thu Sep 21 2017 12:35:04 for PEARL Procedures by
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doc/html/group___arpes_package.html

@@ -32,7 +32,7 @@
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 <div id="nav-path" class="navpath"><!-- id is needed for treeview function! -->
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-    <li class="footer">Generated on Tue Jul 4 2017 11:17:32 for PEARL Procedures by
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 <p>An open distribution of PEARL Procedures is available under the <a href="http://www.apache.org/licenses/LICENSE-2.0">Apache License, Version 2.0</a> at <a href="https://git.psi.ch/pearl-public/igor-procs">https://git.psi.ch/pearl-public/igor-procs</a>. Users of PEARL Procedures are requested to coordinate and share the development of the code with the original author. Please read and respect the respective license agreements.</p>
 <dl class="section author"><dt>Author</dt><dd>Matthias Muntwiler, <a href="#" onclick="location.href='mai'+'lto:'+'mat'+'th'+'ias'+'.m'+'unt'+'wi'+'ler'+'@p'+'si.'+'ch'; return false;">matth<span style="display: none;">.nosp@m.</span>ias.<span style="display: none;">.nosp@m.</span>muntw<span style="display: none;">.nosp@m.</span>iler<span style="display: none;">.nosp@m.</span>@psi.<span style="display: none;">.nosp@m.</span>ch</a> </dd></dl>
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 <dl class="section copyright"><dt>Copyright</dt><dd>2009-2016 by <a href="http://www.psi.ch">Paul Scherrer Institut</a> </dd>
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    <div id="projectbrief">Igor procedures for the analysis of PEARL data</div>
   </td>
@@ -137,6 +137,9 @@ Functions</h2></td></tr>
 <tr class="memitem:a48b7d774ed8d3f4329e9923e18e580e8"><td class="memItemLeft" align="right" valign="top">variable&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="pearl-anglescan-process_8ipf.html#a48b7d774ed8d3f4329e9923e18e580e8">normalize_strip_x</a> (wave strip, variable smooth_method=defaultValue, variable smooth_factor=defaultValue, variable check=defaultValue)</td></tr>
 <tr class="memdesc:a48b7d774ed8d3f4329e9923e18e580e8"><td class="mdescLeft">&#160;</td><td class="mdescRight">divide the strip by the average X distribution.  <a href="#a48b7d774ed8d3f4329e9923e18e580e8">More...</a><br /></td></tr>
 <tr class="separator:a48b7d774ed8d3f4329e9923e18e580e8"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:aaa734fddecdd75c7cabe20ba777b41b9"><td class="memItemLeft" align="right" valign="top">variable&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="pearl-anglescan-process_8ipf.html#aaa734fddecdd75c7cabe20ba777b41b9">normalize_strip_phi</a> (wave strip, wave theta, wave phi, variable theta_offset=defaultValue, variable theta_range=defaultValue, variable check=defaultValue)</td></tr>
+<tr class="memdesc:aaa734fddecdd75c7cabe20ba777b41b9"><td class="mdescLeft">&#160;</td><td class="mdescRight">divide the strip by a sine function in phi (wobble correction).  <a href="#aaa734fddecdd75c7cabe20ba777b41b9">More...</a><br /></td></tr>
+<tr class="separator:aaa734fddecdd75c7cabe20ba777b41b9"><td class="memSeparator" colspan="2">&#160;</td></tr>
 <tr class="memitem:a9b56897bd92d926d65f4c67bef1d41bb"><td class="memItemLeft" align="right" valign="top">variable&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="pearl-anglescan-process_8ipf.html#a9b56897bd92d926d65f4c67bef1d41bb">normalize_strip_theta</a> (wave strip, wave theta, variable theta_offset=defaultValue, variable smooth_method=defaultValue, variable smooth_factor=defaultValue, variable check=defaultValue)</td></tr>
 <tr class="memdesc:a9b56897bd92d926d65f4c67bef1d41bb"><td class="mdescLeft">&#160;</td><td class="mdescRight">divide the strip by the average polar distribution.  <a href="#a9b56897bd92d926d65f4c67bef1d41bb">More...</a><br /></td></tr>
 <tr class="separator:a9b56897bd92d926d65f4c67bef1d41bb"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -258,6 +261,11 @@ Functions</h2></td></tr>
 <tr class="memitem:ab6ac1268de338040028dca8d0ddc967c"><td class="memItemLeft" align="right" valign="top">wave&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="pearl-anglescan-process_8ipf.html#ab6ac1268de338040028dca8d0ddc967c">hemi_azi_cut</a> (string nickname, variable pol)</td></tr>
 <tr class="memdesc:ab6ac1268de338040028dca8d0ddc967c"><td class="mdescLeft">&#160;</td><td class="mdescRight">extract an azimuthal cut from a hemispherical scan  <a href="#ab6ac1268de338040028dca8d0ddc967c">More...</a><br /></td></tr>
 <tr class="separator:ab6ac1268de338040028dca8d0ddc967c"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a2e1ed05781f9eb4be5e77695ef049962"><td class="memItemLeft" align="right" valign="top">static variable&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="pearl-anglescan-process_8ipf.html#a2e1ed05781f9eb4be5e77695ef049962">check_contrast</a> (wave values, variable pcmin, variable pcmax, variable *vmin, variable *vmax)</td></tr>
+<tr class="separator:a2e1ed05781f9eb4be5e77695ef049962"><td class="memSeparator" colspan="2">&#160;</td></tr>
+<tr class="memitem:a666dab03bb2e97ffef81cea450184d42"><td class="memItemLeft" align="right" valign="top">variable&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="pearl-anglescan-process_8ipf.html#a666dab03bb2e97ffef81cea450184d42">set_contrast</a> (variable pcmin, variable pcmax, string graphname=defaultValue, string colortable=defaultValue)</td></tr>
+<tr class="memdesc:a666dab03bb2e97ffef81cea450184d42"><td class="mdescLeft">&#160;</td><td class="mdescRight">set the pseudocolor contrast by percentile.  <a href="#a666dab03bb2e97ffef81cea450184d42">More...</a><br /></td></tr>
+<tr class="separator:a666dab03bb2e97ffef81cea450184d42"><td class="memSeparator" colspan="2">&#160;</td></tr>
 </table><table class="memberdecls">
 <tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="var-members"></a>
 Variables</h2></td></tr>
@@ -295,11 +303,11 @@ data imported with version 1.5 and earlier, must be offset by 180 deg in phi to
 *      phi_sample = 270 if tilt_manipulator - tilt_offset &gt; 0
 *      phi_sample = 90 if tilt_manipulator - tilt_offset &lt; 0
 * </pre><dl class="section author"><dt>Author</dt><dd>matthias muntwiler, <a href="#" onclick="location.href='mai'+'lto:'+'mat'+'th'+'ias'+'.m'+'unt'+'wi'+'ler'+'@p'+'si.'+'ch'; return false;">matth<span style="display: none;">.nosp@m.</span>ias.<span style="display: none;">.nosp@m.</span>muntw<span style="display: none;">.nosp@m.</span>iler<span style="display: none;">.nosp@m.</span>@psi.<span style="display: none;">.nosp@m.</span>ch</a></dd></dl>
-<dl class="section copyright"><dt>Copyright</dt><dd>2013-16 Paul Scherrer Institut <br />
+<dl class="section copyright"><dt>Copyright</dt><dd>2013-17 Paul Scherrer Institut <br />
  Licensed under the Apache License, Version 2.0 (the "License"); <br />
  you may not use this file except in compliance with the License. <br />
  You may obtain a copy of the License at <a href="http://www.apache.org/licenses/LICENSE-2.0">http://www.apache.org/licenses/LICENSE-2.0</a></dd></dl>
-<dl class="section version"><dt>Version</dt><dd>1.6 canonical orientation of spherical coordinate system. </dd></dl>
+<dl class="section version"><dt>Version</dt><dd>1.8 canonical orientation of spherical coordinate system. </dd></dl>
 
 <p>Definition in file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 </div><h2 class="groupheader">Function Documentation</h2>
@@ -362,7 +370,7 @@ data imported with version 1.5 and earlier, must be offset by 180 deg in phi to
 </dl>
 <dl class="section return"><dt>Returns</dt><dd>polar angle in degrees </dd></dl>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02051">2051</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02129">2129</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -414,7 +422,7 @@ data imported with version 1.5 and earlier, must be offset by 180 deg in phi to
 </dl>
 <dl class="section return"><dt>Returns</dt><dd>polar angle in degrees </dd></dl>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l01998">1998</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02076">2076</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -459,7 +467,7 @@ data imported with version 1.5 and earlier, must be offset by 180 deg in phi to
 </dl>
 <dl class="section return"><dt>Returns</dt><dd>projected radius. the radius is scaled such that grazing emission maps to 2. </dd></dl>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l01953">1953</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02031">2031</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -522,7 +530,7 @@ data imported with version 1.5 and earlier, must be offset by 180 deg in phi to
 <p>calculate the number of phis for a given theta </p>
 <p>adapted from XPDplot 8.03 </p>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l00857">857</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l00935">935</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -585,7 +593,7 @@ data imported with version 1.5 and earlier, must be offset by 180 deg in phi to
 <p>calculate delta-phi for a given theta </p>
 <p>adapted from XPDplot 8.03 </p>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l00886">886</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l00964">964</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -630,7 +638,7 @@ data imported with version 1.5 and earlier, must be offset by 180 deg in phi to
 <p>calculate delta-theta for a given theta </p>
 <p>adapted from XPDplot 8.03 </p>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l00930">930</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l01008">1008</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -681,7 +689,61 @@ data imported with version 1.5 and earlier, must be offset by 180 deg in phi to
 <p>calculate the number of thetas for a pattern </p>
 <p>adapted from XPDplot 8.03 </p>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l00961">961</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l01039">1039</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+
+</div>
+</div>
+<a class="anchor" id="a2e1ed05781f9eb4be5e77695ef049962"></a>
+<div class="memitem">
+<div class="memproto">
+<table class="mlabels">
+  <tr>
+  <td class="mlabels-left">
+      <table class="memname">
+        <tr>
+          <td class="memname">static variable check_contrast </td>
+          <td>(</td>
+          <td class="paramtype">wave&#160;</td>
+          <td class="paramname"><em>values</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">variable&#160;</td>
+          <td class="paramname"><em>pcmin</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">variable&#160;</td>
+          <td class="paramname"><em>pcmax</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">variable *&#160;</td>
+          <td class="paramname"><em>vmin</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">variable *&#160;</td>
+          <td class="paramname"><em>vmax</em>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+  </td>
+  <td class="mlabels-right">
+<span class="mlabels"><span class="mlabel">static</span></span>  </td>
+  </tr>
+</table>
+</div><div class="memdoc">
+
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02925">2925</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -708,7 +770,7 @@ data imported with version 1.5 and earlier, must be offset by 180 deg in phi to
   </dd>
 </dl>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l01240">1240</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l01318">1318</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -775,7 +837,7 @@ data imported with version 1.5 and earlier, must be offset by 180 deg in phi to
 </dl>
 <p>for the output parameters polar and azi, you need to pass in existing numeric waves. dimension size does not matter, the waves are redimensioned by the function so that they have the same dimensions as the intensity data set. X dimension = analyser scale, Y dimension = manipulator scan. </p>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l00796">796</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l00874">874</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -830,7 +892,7 @@ data imported with version 1.5 and earlier, must be offset by 180 deg in phi to
 <p>convert angles from TTPA (theta-tilt-phi-analyser) scheme to polar coordinates. </p>
 <p>similar to <a class="el" href="pearl-anglescan-process_8ipf.html#a3cc7eddf5c6b0658260cfb32dd2c026d" title="convert angles from TTPA (theta-tilt-phi-analyser) scheme to polar coordinates. ">convert_angles_ttpa2polar()</a> but reads the analyser angles from the X scale of data </p>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l00757">757</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l00835">835</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -876,7 +938,7 @@ data imported with version 1.5 and earlier, must be offset by 180 deg in phi to
 </dl>
 <dl class="section remark"><dt>Remarks</dt><dd>cropping should be done after smoothing and normalization operations to reduce artefacts. </dd></dl>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l00417">417</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l00495">495</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -964,7 +1026,7 @@ data imported with version 1.5 and earlier, must be offset by 180 deg in phi to
 </dl>
 <dl class="section return"><dt>Returns</dt><dd>the name of the graph window </dd></dl>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l01450">1450</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l01528">1528</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -1032,7 +1094,7 @@ data imported with version 1.5 and earlier, must be offset by 180 deg in phi to
 <dl class="section return"><dt>Returns</dt><dd>the name of the graph window.</dd></dl>
 <dl class="section version"><dt>Version</dt><dd>1.7 interface change: the trace drawing code is moved to display_hemi_scan, so that this function can be reused by other graph types, e.g. display_scanlines. </dd></dl>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l01587">1587</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l01665">1665</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -1112,7 +1174,7 @@ data imported with version 1.5 and earlier, must be offset by 180 deg in phi to
 </dl>
 <dl class="section remark"><dt>Remarks</dt><dd>this function is extremely slow. </dd></dl>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l01838">1838</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l01916">1916</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -1172,7 +1234,7 @@ data imported with version 1.5 and earlier, must be offset by 180 deg in phi to
 </dl>
 <dl class="section warning"><dt>Warning</dt><dd>EXPERIMENTAL! this function is under development. the interface and behaviour of this function may change significantly in future versions. </dd></dl>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l01774">1774</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l01852">1852</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -1229,7 +1291,7 @@ data imported with version 1.5 and earlier, must be offset by 180 deg in phi to
 </dl>
 <dl class="section warning"><dt>Warning</dt><dd>EXPERIMENTAL! this function is under development. the interface and behaviour of this function may change significantly in future versions. </dd></dl>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l01702">1702</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l01780">1780</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -1286,7 +1348,7 @@ data imported with version 1.5 and earlier, must be offset by 180 deg in phi to
   </dd>
 </dl>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l01287">1287</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l01365">1365</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -1337,7 +1399,7 @@ data imported with version 1.5 and earlier, must be offset by 180 deg in phi to
 </dl>
 <dl class="section return"><dt>Returns</dt><dd>reference of the data folder which contains the waves </dd></dl>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l01206">1206</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l01284">1284</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -1359,7 +1421,7 @@ data imported with version 1.5 and earlier, must be offset by 180 deg in phi to
 <p>the nick name is either the name of a child folder in the current data folder (PEARL specification), or a prefix of the hemi wave names (XPDplot specification).</p>
 <dl class="section return"><dt>Returns</dt><dd>the nick name </dd></dl>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l01150">1150</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l01228">1228</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -1381,7 +1443,7 @@ data imported with version 1.5 and earlier, must be offset by 180 deg in phi to
 <p>the prefix is the part of the wave name before the first underscore. the prefix is used by XPDplot where it is identical to the nick name. the prefix is empty in the PEARL specification.</p>
 <dl class="section return"><dt>Returns</dt><dd>the prefix </dd></dl>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l01175">1175</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l01253">1253</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -1430,7 +1492,7 @@ data imported with version 1.5 and earlier, must be offset by 180 deg in phi to
 <p>add an arbitrary angle scan to a hemispherical scan grid. </p>
 <p>the hemi grid must have been created in the current data folder by the make_hemi_grid function. the function determines the bin size at the given polar angle, and adds all data points which fall into a bin. a point which lies exactly on the upper boundary falls into the next bin. this function does not clear previous values before adding new data. values are added to the _tot wave, weights to the _wt wave. the intensity (_i) wave is calculated as _tot / _wt. </p>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02197">2197</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02275">2275</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -1479,7 +1541,7 @@ data imported with version 1.5 and earlier, must be offset by 180 deg in phi to
 <p>add an azimuthal scan to a hemispherical scan grid. </p>
 <p>the hemi grid must have been created in the current data folder by the make_hemi_grid function. the function determines the bin size at the given polar angle, and calculates the mean values of the data points which fall into a bin. a point which lies exactly on the upper boundary falls into the next bin. </p>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02270">2270</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02348">2348</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -1519,7 +1581,7 @@ data imported with version 1.5 and earlier, must be offset by 180 deg in phi to
 </dl>
 <dl class="section return"><dt>Returns</dt><dd>reference of the created wave. the wave has the same name as the intensity wave of the dataset with the suffix "_azi" and the azimuthal angle rounded to integer. it is created in the same datafolder as the original data. </dd></dl>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02796">2796</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02874">2874</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -1559,7 +1621,7 @@ data imported with version 1.5 and earlier, must be offset by 180 deg in phi to
 </dl>
 <dl class="section return"><dt>Returns</dt><dd>reference of the created wave. the wave has the same name as the intensity wave of the dataset with the suffix "_azi" and the azimuthal angle rounded to integer. it is created in the same datafolder as the original data. </dd></dl>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02712">2712</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02790">2790</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -1651,7 +1713,7 @@ data imported with version 1.5 and earlier, must be offset by 180 deg in phi to
   </dd>
 </dl>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02621">2621</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02699">2699</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -1672,7 +1734,7 @@ data imported with version 1.5 and earlier, must be offset by 180 deg in phi to
 <p>interpolate a hemispherical scan onto a rectangular grid </p>
 <dl class="section warning"><dt>Warning</dt><dd>experimental this function has been tested for one specific set of scan parameters. the interface and code may change at any time. the function depends on the ster_x and ster_y waves that are created by display_hemi_scan. </dd></dl>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02371">2371</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02449">2449</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -1708,7 +1770,7 @@ data imported with version 1.5 and earlier, must be offset by 180 deg in phi to
 </table>
 </div><div class="memdoc">
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l00839">839</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l00917">917</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -1745,7 +1807,7 @@ data imported with version 1.5 and earlier, must be offset by 180 deg in phi to
 <p>load a hemispherical scan from an Igor text file </p>
 <dl class="todo"><dt><b><a class="el" href="todo.html#_todo000001">Todo:</a></b></dt><dd>function not implemented </dd></dl>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02572">2572</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02650">2650</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -1795,7 +1857,7 @@ data imported with version 1.5 and earlier, must be offset by 180 deg in phi to
   </dd>
 </dl>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l00999">999</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l01077">1077</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -1866,7 +1928,85 @@ data imported with version 1.5 and earlier, must be offset by 180 deg in phi to
 </ul>
 </dd></dl>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l00357">357</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l00435">435</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+
+</div>
+</div>
+<a class="anchor" id="aaa734fddecdd75c7cabe20ba777b41b9"></a>
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">variable normalize_strip_phi </td>
+          <td>(</td>
+          <td class="paramtype">wave&#160;</td>
+          <td class="paramname"><em>strip</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">wave&#160;</td>
+          <td class="paramname"><em>theta</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">wave&#160;</td>
+          <td class="paramname"><em>phi</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">variable&#160;</td>
+          <td class="paramname"><em>theta_offset</em> = <code>defaultValue</code>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">variable&#160;</td>
+          <td class="paramname"><em>theta_range</em> = <code>defaultValue</code>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">variable&#160;</td>
+          <td class="paramname"><em>check</em> = <code>defaultValue</code>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>divide the strip by a sine function in phi (wobble correction). </p>
+<p>the sine function is a curve fit to the intensity integrated over detector angle with a period of 360.</p>
+<p>this normalization may be useful if the intensity varies with a 360 periodicity in the azimuthal angle, e.g. due to misalignment of the surface normal and the azimuthal rotation axis of the manipulator (wobble). note, however, that this function does not correct other effects of wobble such as angle shifts.</p>
+<p>the strip is normalized in place, previous data is overwritten.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramdir">[in,out]</td><td class="paramname">strip</td><td>2D data, X-axis = analyser angle, Y-axis = arbitrary manipulator scan </td></tr>
+    <tr><td class="paramdir">[in]</td><td class="paramname">theta</td><td>polar manipulator angle. </td></tr>
+    <tr><td class="paramdir">[in]</td><td class="paramname">phi</td><td>azimuthal manipulator angle, arbitrary offset. </td></tr>
+    <tr><td class="paramdir">[in]</td><td class="paramname">theta_offset</td><td>theta value corresponding to normal emission (default 0). </td></tr>
+    <tr><td class="paramdir">[in]</td><td class="paramname">theta_range</td><td>maximum (offset corrected) theta to consider in the sine fit (default 10).</td></tr>
+    <tr><td class="paramdir"></td><td class="paramname">check</td><td>enable output of intermediate results <ul>
+<li>0 (default) don't create additional waves </li>
+<li>1 create check waves in the current folder </li>
+<li>2 calculate check waves only, do not modify strip</li>
+</ul>
+</td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>if check waves are enabled, the following waves are created (overwritten if existing): <ul>
+<li>check_dist average theta distribution </li>
+<li>check_smoo smoothed distribution used to normalize the strip </li>
+</ul>
+</dd></dl>
+
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l00270">270</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -1953,7 +2093,7 @@ caution: binomial and boxcar smoothing are not aware of theta. this may give unp
 </ul>
 </dd></dl>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l00275">275</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l00353">353</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -2126,7 +2266,7 @@ caution: binomial and boxcar smoothing are not aware of theta. this may give unp
 </dl>
 <dl class="section attention"><dt>Attention</dt><dd>if you modify the structure of the data wave, e.g. delete some angles, this function cannot be used because the manipulator settings do not correspond to the original manipulator waves! instead, create your own manipulator waves and use <a class="el" href="pearl-anglescan-process_8ipf.html#a229770447193d4fd12032b235aab4d28" title="create a pizza plot from a measured (energy-integrated) data strip ">pizza_service_2()</a>. </dd></dl>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l00477">477</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l00555">555</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -2230,7 +2370,7 @@ caution: binomial and boxcar smoothing are not aware of theta. this may give unp
   </dd>
 </dl>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l00570">570</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l00648">648</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -2259,7 +2399,7 @@ caution: binomial and boxcar smoothing are not aware of theta. this may give unp
 <p>polar graph window hook </p>
 <p>this hook converts the cursor positions to polar coordinates and displays them in a text box on the graph. the text box is visible while the cursor info box is visible. </p>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02131">2131</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02209">2209</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -2334,7 +2474,7 @@ caution: binomial and boxcar smoothing are not aware of theta. this may give unp
 <dl class="section pre"><dt>Precondition</dt><dd>manipulator angles as attributes in attr folder next to the data wave</dd></dl>
 <dl class="section warning"><dt>Warning</dt><dd>EXPERIMENTAL </dd></dl>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02425">2425</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02503">2503</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -2372,7 +2512,7 @@ caution: binomial and boxcar smoothing are not aware of theta. this may give unp
   </dd>
 </dl>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l01371">1371</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l01449">1449</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -2408,7 +2548,61 @@ caution: binomial and boxcar smoothing are not aware of theta. this may give unp
 
 <p>save a hemispherical scan to an Igor text file </p>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02536">2536</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02614">2614</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+
+</div>
+</div>
+<a class="anchor" id="a666dab03bb2e97ffef81cea450184d42"></a>
+<div class="memitem">
+<div class="memproto">
+      <table class="memname">
+        <tr>
+          <td class="memname">variable set_contrast </td>
+          <td>(</td>
+          <td class="paramtype">variable&#160;</td>
+          <td class="paramname"><em>pcmin</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">variable&#160;</td>
+          <td class="paramname"><em>pcmax</em>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">string&#160;</td>
+          <td class="paramname"><em>graphname</em> = <code>defaultValue</code>, </td>
+        </tr>
+        <tr>
+          <td class="paramkey"></td>
+          <td></td>
+          <td class="paramtype">string&#160;</td>
+          <td class="paramname"><em>colortable</em> = <code>defaultValue</code>&#160;</td>
+        </tr>
+        <tr>
+          <td></td>
+          <td>)</td>
+          <td></td><td></td>
+        </tr>
+      </table>
+</div><div class="memdoc">
+
+<p>set the pseudocolor contrast by percentile. </p>
+<p>set the minimum and maximum values of the pseudocolor scale such that a specified percentile of the distribution lies outside the limits.</p>
+<p>the new contrast is applied to traces and images of the selected graph that have pseudocolor tables.</p>
+<p>the function is not specific to angle scans. it can be used for any pseudocolor trace or image plots except contour plots.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">pcmin</td><td>percentile below the minimum color (0-100). </td></tr>
+    <tr><td class="paramname">pcmax</td><td>percentile above the maximum color (0-100). </td></tr>
+    <tr><td class="paramname">graphname</td><td>name of graph. default: top graph. </td></tr>
+    <tr><td class="paramname">colortable</td><td>name of new colortable. default: keep current table. </td></tr>
+  </table>
+  </dd>
+</dl>
+
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02961">2961</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
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@@ -2454,7 +2648,7 @@ caution: binomial and boxcar smoothing are not aware of theta. this may give unp
       </table>
 </div><div class="memdoc">
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02151">2151</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02229">2229</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -2550,7 +2744,7 @@ caution: binomial and boxcar smoothing are not aware of theta. this may give unp
 </dl>
 <dl class="section remark"><dt>Remarks</dt><dd>the function creates angle scan data under the nickname <em>analyser</em>. </dd></dl>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l00687">687</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l00765">765</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -2654,7 +2848,7 @@ caution: binomial and boxcar smoothing are not aware of theta. this may give unp
   </dd>
 </dl>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02670">2670</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02748">2748</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -2690,7 +2884,7 @@ caution: binomial and boxcar smoothing are not aware of theta. this may give unp
   </dd>
 </dl>
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02096">2096</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02174">2174</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
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@@ -2705,7 +2899,7 @@ caution: binomial and boxcar smoothing are not aware of theta. this may give unp
       </table>
 </div><div class="memdoc">
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l01928">1928</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02006">2006</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
 </div>
 </div>
@@ -2719,7 +2913,7 @@ caution: binomial and boxcar smoothing are not aware of theta. this may give unp
       </table>
 </div><div class="memdoc">
 
-<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l01926">1926</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02004">2004</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
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+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02007">2007</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
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+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02008">2008</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
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+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02012">2012</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
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+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02010">2010</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
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+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02014">2014</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
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+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02015">2015</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
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+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02011">2011</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
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+<p>Definition at line <a class="el" href="pearl-anglescan-process_8ipf_source.html#l02005">2005</a> of file <a class="el" href="pearl-anglescan-process_8ipf_source.html">pearl-anglescan-process.ipf</a>.</p>
 
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-    <li class="footer">Generated on Tue Jul 4 2017 11:17:32 for PEARL Procedures by
+    <li class="footer">Generated on Thu Sep 21 2017 12:35:04 for PEARL Procedures by
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+    <li class="footer">Generated on Thu Sep 21 2017 12:35:04 for PEARL Procedures by
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doc/html/pearl-area-display_8ipf.html

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+<tr class="memdesc:ace169e0824e6bddbd646972946edccbe"><td class="mdescLeft">&#160;</td><td class="mdescRight">set slice coordinate (slider procedure).  <a href="#ace169e0824e6bddbd646972946edccbe">More...</a><br /></td></tr>
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+<p>Definition at line <a class="el" href="pearl-area-display_8ipf_source.html#l01563">1563</a> of file <a class="el" href="pearl-area-display_8ipf_source.html">pearl-area-display.ipf</a>.</p>
 
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+<p>Definition at line <a class="el" href="pearl-area-display_8ipf_source.html#l01666">1666</a> of file <a class="el" href="pearl-area-display_8ipf_source.html">pearl-area-display.ipf</a>.</p>
 
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+<p>Definition at line <a class="el" href="pearl-area-display_8ipf_source.html#l01499">1499</a> of file <a class="el" href="pearl-area-display_8ipf_source.html">pearl-area-display.ipf</a>.</p>
 
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doc/html/pearl-area-profiles_8ipf.html

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+<p>Definition at line <a class="el" href="pearl-data-explorer_8ipf_source.html#l00560">560</a> of file <a class="el" href="pearl-data-explorer_8ipf_source.html">pearl-data-explorer.ipf</a>.</p>
 
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+<p>Definition at line <a class="el" href="pearl-data-explorer_8ipf_source.html#l00517">517</a> of file <a class="el" href="pearl-data-explorer_8ipf_source.html">pearl-data-explorer.ipf</a>.</p>
 
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@@ -1407,7 +1407,7 @@ Variables</h2></td></tr>
 </dl>
 <dl class="section return"><dt>Returns</dt><dd>wave reference of the preview image </dd></dl>
 
-<p>Definition at line <a class="el" href="pearl-data-explorer_8ipf_source.html#l00350">350</a> of file <a class="el" href="pearl-data-explorer_8ipf_source.html">pearl-data-explorer.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-data-explorer_8ipf_source.html#l00363">363</a> of file <a class="el" href="pearl-data-explorer_8ipf_source.html">pearl-data-explorer.ipf</a>.</p>
 
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+<p>Definition at line <a class="el" href="pearl-data-explorer_8ipf_source.html#l00395">395</a> of file <a class="el" href="pearl-data-explorer_8ipf_source.html">pearl-data-explorer.ipf</a>.</p>
 
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 <dl class="section return"><dt>Returns</dt><dd>wave reference of the preview image. empty wave reference if the function failed. </dd></dl>
 
-<p>Definition at line <a class="el" href="pearl-data-explorer_8ipf_source.html#l00422">422</a> of file <a class="el" href="pearl-data-explorer_8ipf_source.html">pearl-data-explorer.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-data-explorer_8ipf_source.html#l00435">435</a> of file <a class="el" href="pearl-data-explorer_8ipf_source.html">pearl-data-explorer.ipf</a>.</p>
 
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+<p>Definition at line <a class="el" href="pearl-data-explorer_8ipf_source.html#l00601">601</a> of file <a class="el" href="pearl-data-explorer_8ipf_source.html">pearl-data-explorer.ipf</a>.</p>
 
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 <p>prompt functions must have the same name as the corresponding reduction function with the prefix "prompt_". be aware of the limited length of function names in Igor.</p>
 <p>this function is a prototype. it does nothing but returns OK. </p>
 
-<p>Definition at line <a class="el" href="pearl-data-explorer_8ipf_source.html#l01041">1041</a> of file <a class="el" href="pearl-data-explorer_8ipf_source.html">pearl-data-explorer.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-data-explorer_8ipf_source.html#l01053">1053</a> of file <a class="el" href="pearl-data-explorer_8ipf_source.html">pearl-data-explorer.ipf</a>.</p>
 
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+<p>Definition at line <a class="el" href="pearl-data-explorer_8ipf_source.html#l01059">1059</a> of file <a class="el" href="pearl-data-explorer_8ipf_source.html">pearl-data-explorer.ipf</a>.</p>
 
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-<p>Definition at line <a class="el" href="pearl-data-explorer_8ipf_source.html#l01002">1002</a> of file <a class="el" href="pearl-data-explorer_8ipf_source.html">pearl-data-explorer.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-data-explorer_8ipf_source.html#l01014">1014</a> of file <a class="el" href="pearl-data-explorer_8ipf_source.html">pearl-data-explorer.ipf</a>.</p>
 
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-<p>Definition at line <a class="el" href="pearl-data-explorer_8ipf_source.html#l00859">859</a> of file <a class="el" href="pearl-data-explorer_8ipf_source.html">pearl-data-explorer.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-data-explorer_8ipf_source.html#l00871">871</a> of file <a class="el" href="pearl-data-explorer_8ipf_source.html">pearl-data-explorer.ipf</a>.</p>
 
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+<p>Definition at line <a class="el" href="pearl-data-explorer_8ipf_source.html#l00798">798</a> of file <a class="el" href="pearl-data-explorer_8ipf_source.html">pearl-data-explorer.ipf</a>.</p>
 
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   <ul>
     <li class="navelem"><a class="el" href="dir_fe5dc42579d4b99403482a3a637d9f7d.html">pearl</a></li><li class="navelem"><a class="el" href="pearl-data-explorer_8ipf.html">pearl-data-explorer.ipf</a></li>
-    <li class="footer">Generated on Tue Jul 4 2017 11:17:32 for PEARL Procedures by
+    <li class="footer">Generated on Thu Sep 21 2017 12:35:04 for PEARL Procedures by
     <a href="http://www.doxygen.org/index.html">
     <img class="footer" src="doxygen.png" alt="doxygen"/></a> 1.8.11 </li>
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doc/html/pearl-elog_8ipf.html

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    <div id="projectname">PEARL Procedures
-   &#160;<span id="projectnumber">rev-distro-1.4.0-0-g80a01f2</span>
+   &#160;<span id="projectnumber">rev-distro-1.4.0-1-g0a436db-dirty</span>
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    <div id="projectbrief">Igor procedures for the analysis of PEARL data</div>
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+<tr class="memdesc:af652f6f257be1ee749fe788d1b03f75f"><td class="mdescLeft">&#160;</td><td class="mdescRight">save the message to a temporary text file  <a href="#af652f6f257be1ee749fe788d1b03f75f">More...</a><br /></td></tr>
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 <tr class="memitem:a2417d079483f773f8231c5f2caba6cf0"><td class="memItemLeft" align="right" valign="top">static string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="pearl-elog_8ipf.html#a2417d079483f773f8231c5f2caba6cf0">create_graph_file</a> (string graphname, variable fileindex)</td></tr>
+<tr class="memdesc:a2417d079483f773f8231c5f2caba6cf0"><td class="mdescLeft">&#160;</td><td class="mdescRight">save a graph to a temporary graphics file  <a href="#a2417d079483f773f8231c5f2caba6cf0">More...</a><br /></td></tr>
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+<tr class="memdesc:ac8b61eefed231018cc36d47e95bd8c22"><td class="mdescLeft">&#160;</td><td class="mdescRight">write the command line to a file.  <a href="#ac8b61eefed231018cc36d47e95bd8c22">More...</a><br /></td></tr>
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 *      [-n 0|1|2]               Encoding: 0:ELcode,1:plain,2:HTML
 *      -m &lt;textfile&gt;] | &lt;text&gt;
 * </pre><dl class="section author"><dt>Author</dt><dd>matthias muntwiler, <a href="#" onclick="location.href='mai'+'lto:'+'mat'+'th'+'ias'+'.m'+'unt'+'wi'+'ler'+'@p'+'si.'+'ch'; return false;">matth<span style="display: none;">.nosp@m.</span>ias.<span style="display: none;">.nosp@m.</span>muntw<span style="display: none;">.nosp@m.</span>iler<span style="display: none;">.nosp@m.</span>@psi.<span style="display: none;">.nosp@m.</span>ch</a></dd></dl>
-<dl class="section copyright"><dt>Copyright</dt><dd>2013-16 Paul Scherrer Institut <br />
+<dl class="section copyright"><dt>Copyright</dt><dd>2013-17 Paul Scherrer Institut <br />
  Licensed under the Apache License, Version 2.0 (the "License"); <br />
  you may not use this file except in compliance with the License. <br />
  You may obtain a copy of the License at <a href="http://www.apache.org/licenses/LICENSE-2.0">http://www.apache.org/licenses/LICENSE-2.0</a> </dd></dl>
@@ -422,7 +425,7 @@ Variables</h2></td></tr>
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-<p>Definition at line <a class="el" href="pearl-elog_8ipf_source.html#l01558">1558</a> of file <a class="el" href="pearl-elog_8ipf_source.html">pearl-elog.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-elog_8ipf_source.html#l01634">1634</a> of file <a class="el" href="pearl-elog_8ipf_source.html">pearl-elog.ipf</a>.</p>
 
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@@ -450,7 +453,7 @@ Variables</h2></td></tr>
 
 <p>select/deselect all graph windows for attachment </p>
 
-<p>Definition at line <a class="el" href="pearl-elog_8ipf_source.html#l01537">1537</a> of file <a class="el" href="pearl-elog_8ipf_source.html">pearl-elog.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-elog_8ipf_source.html#l01613">1613</a> of file <a class="el" href="pearl-elog_8ipf_source.html">pearl-elog.ipf</a>.</p>
 
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@@ -478,7 +481,7 @@ Variables</h2></td></tr>
 
 <p>select top graph window for attachment </p>
 
-<p>Definition at line <a class="el" href="pearl-elog_8ipf_source.html#l01521">1521</a> of file <a class="el" href="pearl-elog_8ipf_source.html">pearl-elog.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-elog_8ipf_source.html#l01597">1597</a> of file <a class="el" href="pearl-elog_8ipf_source.html">pearl-elog.ipf</a>.</p>
 
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@@ -506,7 +509,7 @@ Variables</h2></td></tr>
 
 <p>button procedure for the attachment up and down buttons </p>
 
-<p>Definition at line <a class="el" href="pearl-elog_8ipf_source.html#l01442">1442</a> of file <a class="el" href="pearl-elog_8ipf_source.html">pearl-elog.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-elog_8ipf_source.html#l01518">1518</a> of file <a class="el" href="pearl-elog_8ipf_source.html">pearl-elog.ipf</a>.</p>
 
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-<p>Definition at line <a class="el" href="pearl-elog_8ipf_source.html#l01619">1619</a> of file <a class="el" href="pearl-elog_8ipf_source.html">pearl-elog.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-elog_8ipf_source.html#l01695">1695</a> of file <a class="el" href="pearl-elog_8ipf_source.html">pearl-elog.ipf</a>.</p>
 
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@@ -558,7 +561,7 @@ Variables</h2></td></tr>
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-<p>Definition at line <a class="el" href="pearl-elog_8ipf_source.html#l01635">1635</a> of file <a class="el" href="pearl-elog_8ipf_source.html">pearl-elog.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-elog_8ipf_source.html#l01711">1711</a> of file <a class="el" href="pearl-elog_8ipf_source.html">pearl-elog.ipf</a>.</p>
 
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-<p>Definition at line <a class="el" href="pearl-elog_8ipf_source.html#l01653">1653</a> of file <a class="el" href="pearl-elog_8ipf_source.html">pearl-elog.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-elog_8ipf_source.html#l01729">1729</a> of file <a class="el" href="pearl-elog_8ipf_source.html">pearl-elog.ipf</a>.</p>
 
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-<p>Definition at line <a class="el" href="pearl-elog_8ipf_source.html#l01591">1591</a> of file <a class="el" href="pearl-elog_8ipf_source.html">pearl-elog.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-elog_8ipf_source.html#l01667">1667</a> of file <a class="el" href="pearl-elog_8ipf_source.html">pearl-elog.ipf</a>.</p>
 
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@@ -638,7 +641,7 @@ Variables</h2></td></tr>
 
 <p>button procedure for the Submit and Reply buttons </p>
 
-<p>Definition at line <a class="el" href="pearl-elog_8ipf_source.html#l01474">1474</a> of file <a class="el" href="pearl-elog_8ipf_source.html">pearl-elog.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-elog_8ipf_source.html#l01550">1550</a> of file <a class="el" href="pearl-elog_8ipf_source.html">pearl-elog.ipf</a>.</p>
 
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@@ -664,10 +667,10 @@ Variables</h2></td></tr>
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 <p>delete temporary files created by the ELOG module. </p>
-<p>this deletes all temporary graph files that are referenced by the volatile temp_graph_files list. temp_graph_files is a semicolon-delimited string. items are added by <a class="el" href="pearl-elog_8ipf.html#a2417d079483f773f8231c5f2caba6cf0">create_graph_file()</a>.</p>
+<p>this deletes all temporary graph files that are referenced by the volatile temp_graph_files list. temp_graph_files is a semicolon-delimited string. items are added by <a class="el" href="pearl-elog_8ipf.html#a2417d079483f773f8231c5f2caba6cf0" title="save a graph to a temporary graphics file ">create_graph_file()</a>.</p>
 <p>this function should be called before a new experiment is loaded or igor quits. </p>
 
-<p>Definition at line <a class="el" href="pearl-elog_8ipf_source.html#l01039">1039</a> of file <a class="el" href="pearl-elog_8ipf_source.html">pearl-elog.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-elog_8ipf_source.html#l01115">1115</a> of file <a class="el" href="pearl-elog_8ipf_source.html">pearl-elog.ipf</a>.</p>
 
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@@ -693,7 +696,11 @@ Variables</h2></td></tr>
 </table>
 </div><div class="memdoc">
 
-<p>Definition at line <a class="el" href="pearl-elog_8ipf_source.html#l01001">1001</a> of file <a class="el" href="pearl-elog_8ipf_source.html">pearl-elog.ipf</a>.</p>
+<p>write the command line to a file. </p>
+<p>the command script changes the working directory to the Temporary directory. it also deletes a previous elog.log file.</p>
+<dl class="section note"><dt>Note</dt><dd>somewhere the command line (even inside command files) is limited to 1024 bytes. for this reason all files should now be in the Temporary directory assigned by igor. </dd></dl>
+
+<p>Definition at line <a class="el" href="pearl-elog_8ipf_source.html#l01059">1059</a> of file <a class="el" href="pearl-elog_8ipf_source.html">pearl-elog.ipf</a>.</p>
 
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@@ -729,7 +736,20 @@ Variables</h2></td></tr>
 </table>
 </div><div class="memdoc">
 
-<p>Definition at line <a class="el" href="pearl-elog_8ipf_source.html#l00976">976</a> of file <a class="el" href="pearl-elog_8ipf_source.html">pearl-elog.ipf</a>.</p>
+<p>save a graph to a temporary graphics file </p>
+<p>the file is saved to the Temporary directory returned by igor's SpecialDirPath function. the file name contains a time stamp and the specified file index to make it unique. the function returns the name of the file (excluding path!)</p>
+<p>the full path is added to the temp_graph_files global list. a hook function will delete the files listed there when igor quits.</p>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">graphname</td><td>object name of the graph to save. </td></tr>
+    <tr><td class="paramname">fileindex</td><td>incrememtal index of the file within one submission. the file name is made unique by a time stamp and this file index. submissions within the same second must have a unique file index. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>(string) name of the created file. empty string if unsuccessful.</dd></dl>
+<dl class="section version"><dt>Version</dt><dd>1.41 the return value has changed from full path to file name only due to the limited length of the command line (1024 bytes). </dd></dl>
+
+<p>Definition at line <a class="el" href="pearl-elog_8ipf_source.html#l01023">1023</a> of file <a class="el" href="pearl-elog_8ipf_source.html">pearl-elog.ipf</a>.</p>
 
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@@ -755,7 +775,19 @@ Variables</h2></td></tr>
 </table>
 </div><div class="memdoc">
 
-<p>Definition at line <a class="el" href="pearl-elog_8ipf_source.html#l00957">957</a> of file <a class="el" href="pearl-elog_8ipf_source.html">pearl-elog.ipf</a>.</p>
+<p>save the message to a temporary text file </p>
+<p>the file is saved to the Temporary directory returned by igor's SpecialDirPath function under the file name "elog_temp_message.txt". the function returns the name of the file (excluding path!)</p>
+<dl class="section note"><dt>Note</dt><dd>percent characters (%) cannot be passed to elog. they are removed silently from the message.</dd></dl>
+<dl class="params"><dt>Parameters</dt><dd>
+  <table class="params">
+    <tr><td class="paramname">message</td><td>text message to save to the file. </td></tr>
+  </table>
+  </dd>
+</dl>
+<dl class="section return"><dt>Returns</dt><dd>(string) name of the created file. empty string if unsuccessful.</dd></dl>
+<dl class="section version"><dt>Version</dt><dd>1.41 the return value has changed from full path to file name only due to the limited length of the command line (1024 bytes). </dd></dl>
+
+<p>Definition at line <a class="el" href="pearl-elog_8ipf_source.html#l00982">982</a> of file <a class="el" href="pearl-elog_8ipf_source.html">pearl-elog.ipf</a>.</p>
 
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@@ -800,7 +832,7 @@ Variables</h2></td></tr>
 </dl>
 <dl class="section warning"><dt>Warning</dt><dd>this will delete all existing attachments of the entry! </dd></dl>
 
-<p>Definition at line <a class="el" href="pearl-elog_8ipf_source.html#l00788">788</a> of file <a class="el" href="pearl-elog_8ipf_source.html">pearl-elog.ipf</a>.</p>
+<p>Definition at line <a class="el" href="pearl-elog_8ipf_source.html#l00792">792</a> of file <a class="el" href="pearl-elog_8ipf_source.html">pearl-elog.ipf</a>.</p>
 
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+<p>Definition at line <a class="el" href="pearl-elog_8ipf_source.html#l01184">1184</a> of file <a class="el" href="pearl-elog_8ipf_source.html">pearl-elog.ipf</a>.</p>
 
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+<p>Definition at line <a class="el" href="pearl-elog_8ipf_source.html#l01214">1214</a> of file <a class="el" href="pearl-elog_8ipf_source.html">pearl-elog.ipf</a>.</p>
 
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+<p>Definition at line <a class="el" href="pearl-elog_8ipf_source.html#l00902">902</a> of file <a class="el" href="pearl-elog_8ipf_source.html">pearl-elog.ipf</a>.</p>
 
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