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update documentation for 2.1.0

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muntwiler_m
2019-08-14 17:57:25 +02:00
parent 6ab1cefec2
commit b7390cb46f
167 changed files with 1230 additions and 8118 deletions
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@@ -29,7 +29,7 @@
<tr style="height: 56px;">
<td id="projectalign" style="padding-left: 0.5em;">
<div id="projectname">PEARL Procedures
&#160;<span id="projectnumber">rev-distro-2.0.3-0-g0fb0fd9</span>
&#160;<span id="projectnumber">rev-distro-2.0.3-2-g58135e4-dirty</span>
</div>
<div id="projectbrief">Igor procedures for the analysis of PEARL data</div>
</td>
@@ -92,6 +92,7 @@ $(document).ready(function(){initNavTree('pearl-area-import_8ipf.html','');});
<p>HDF5 file import from EPICS area detectors.
<a href="#details">More...</a></p>
<div class="textblock"><code>#include &lt;HDF5 Browser&gt;</code><br />
<code>#include &quot;pearl-compat&quot;</code><br />
<code>#include &quot;pearl-gui-tools&quot;</code><br />
</div>
<p><a href="pearl-area-import_8ipf_source.html">Go to the source code of this file.</a></p>
@@ -155,6 +156,12 @@ Functions</h2></td></tr>
<tr class="memitem:a98804ce23a5c2c314ac243baa0824424"><td class="memItemLeft" align="right" valign="top">string&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="pearl-area-import_8ipf.html#a98804ce23a5c2c314ac243baa0824424">adh5_test_reduction_func</a> (wave source, funcref reduction_func, string reduction_param, string result_prefix)</td></tr>
<tr class="memdesc:a98804ce23a5c2c314ac243baa0824424"><td class="mdescLeft">&#160;</td><td class="mdescRight">wrapper function for testing reduction functions from the command line. <a href="#a98804ce23a5c2c314ac243baa0824424">More...</a><br /></td></tr>
<tr class="separator:a98804ce23a5c2c314ac243baa0824424"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:ae88bc41882fd16c94c04d856f3e062e4"><td class="memItemLeft" align="right" valign="top">variable&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="pearl-area-import_8ipf.html#ae88bc41882fd16c94c04d856f3e062e4">adh5_reduce_brick</a> (wave source, funcref reduction_func, string reduction_param, string result_prefix, variable progress=defaultValue, variable nthreads=defaultValue)</td></tr>
<tr class="memdesc:ae88bc41882fd16c94c04d856f3e062e4"><td class="mdescLeft">&#160;</td><td class="mdescRight">reduce a three-dimensional intensity distribution <a href="#ae88bc41882fd16c94c04d856f3e062e4">More...</a><br /></td></tr>
<tr class="separator:ae88bc41882fd16c94c04d856f3e062e4"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a4efc9178892310c9e2caf40c61d71bd7"><td class="memItemLeft" align="right" valign="top">static threadsafe variable&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="pearl-area-import_8ipf.html#a4efc9178892310c9e2caf40c61d71bd7">reduce_brick_worker</a> (funcref reduction_func)</td></tr>
<tr class="memdesc:a4efc9178892310c9e2caf40c61d71bd7"><td class="mdescLeft">&#160;</td><td class="mdescRight">thread worker for adh5_reduce_brick <a href="#a4efc9178892310c9e2caf40c61d71bd7">More...</a><br /></td></tr>
<tr class="separator:a4efc9178892310c9e2caf40c61d71bd7"><td class="memSeparator" colspan="2">&#160;</td></tr>
<tr class="memitem:a27a72a3901a5342ca9dea02e3219631c"><td class="memItemLeft" align="right" valign="top">threadsafe variable&#160;</td><td class="memItemRight" valign="bottom"><a class="el" href="pearl-area-import_8ipf.html#a27a72a3901a5342ca9dea02e3219631c">adh5_get_result_waves</a> (wave results, string result_prefix, variable start_index)</td></tr>
<tr class="memdesc:a27a72a3901a5342ca9dea02e3219631c"><td class="mdescLeft">&#160;</td><td class="mdescRight">copy waves from wave reference wave into current data folder <a href="#a27a72a3901a5342ca9dea02e3219631c">More...</a><br /></td></tr>
<tr class="separator:a27a72a3901a5342ca9dea02e3219631c"><td class="memSeparator" colspan="2">&#160;</td></tr>
@@ -214,7 +221,7 @@ Licensed under the Apache License, Version 2.0 (the "License"); <br />
</dd>
</dl>
<p class="definition">Definition at line <a class="el" href="pearl-area-import_8ipf_source.html#l00166">166</a> of file <a class="el" href="pearl-area-import_8ipf_source.html">pearl-area-import.ipf</a>.</p>
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</dd>
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@@ -313,7 +320,7 @@ Licensed under the Apache License, Version 2.0 (the "License"); <br />
</dl>
<dl class="section return"><dt>Returns</dt><dd>a free wave containing references of the result waves. the result waves should as well be free waves. if an error occurred, the reference wave is empty. </dd></dl>
<p class="definition">Definition at line <a class="el" href="pearl-area-import_8ipf_source.html#l01110">1110</a> of file <a class="el" href="pearl-area-import_8ipf_source.html">pearl-area-import.ipf</a>.</p>
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<p class="definition">Definition at line <a class="el" href="pearl-area-import_8ipf_source.html#l01192">1192</a> of file <a class="el" href="pearl-area-import_8ipf_source.html">pearl-area-import.ipf</a>.</p>
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@@ -382,7 +389,7 @@ Licensed under the Apache License, Version 2.0 (the "License"); <br />
<p>get a list of functions which can be used as reduction functions. </p>
<p>the function evaluates only the function arguments, it may thus include functions which are not suitable as reduction functions. </p>
<p class="definition">Definition at line <a class="el" href="pearl-area-import_8ipf_source.html#l01040">1040</a> of file <a class="el" href="pearl-area-import_8ipf_source.html">pearl-area-import.ipf</a>.</p>
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<p class="definition">Definition at line <a class="el" href="pearl-area-import_8ipf_source.html#l00944">944</a> of file <a class="el" href="pearl-area-import_8ipf_source.html">pearl-area-import.ipf</a>.</p>
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@@ -599,7 +606,7 @@ Licensed under the Apache License, Version 2.0 (the "License"); <br />
</dl>
<dl class="section return"><dt>Returns</dt><dd>0 if successful, non-zero if an error occurred. </dd></dl>
<p class="definition">Definition at line <a class="el" href="pearl-area-import_8ipf_source.html#l00779">779</a> of file <a class="el" href="pearl-area-import_8ipf_source.html">pearl-area-import.ipf</a>.</p>
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</dd>
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<p class="definition">Definition at line <a class="el" href="pearl-area-import_8ipf_source.html#l00301">301</a> of file <a class="el" href="pearl-area-import_8ipf_source.html">pearl-area-import.ipf</a>.</p>
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</dd>
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<p class="definition">Definition at line <a class="el" href="pearl-area-import_8ipf_source.html#l01228">1228</a> of file <a class="el" href="pearl-area-import_8ipf_source.html">pearl-area-import.ipf</a>.</p>
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</dd>
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<p class="definition">Definition at line <a class="el" href="pearl-area-import_8ipf_source.html#l01552">1552</a> of file <a class="el" href="pearl-area-import_8ipf_source.html">pearl-area-import.ipf</a>.</p>
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</dd>
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<a id="ae88bc41882fd16c94c04d856f3e062e4"></a>
<h2 class="memtitle"><span class="permalink"><a href="#ae88bc41882fd16c94c04d856f3e062e4">&#9670;&nbsp;</a></span>adh5_reduce_brick()</h2>
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<div class="memproto">
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<tr>
<td class="memname">variable adh5_reduce_brick </td>
<td>(</td>
<td class="paramtype">wave&#160;</td>
<td class="paramname"><em>source</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">funcref&#160;</td>
<td class="paramname"><em>reduction_func</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">string&#160;</td>
<td class="paramname"><em>reduction_param</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">string&#160;</td>
<td class="paramname"><em>result_prefix</em>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">variable&#160;</td>
<td class="paramname"><em>progress</em> = <code>defaultValue</code>, </td>
</tr>
<tr>
<td class="paramkey"></td>
<td></td>
<td class="paramtype">variable&#160;</td>
<td class="paramname"><em>nthreads</em> = <code>defaultValue</code>&#160;</td>
</tr>
<tr>
<td></td>
<td>)</td>
<td></td><td></td>
</tr>
</table>
</div><div class="memdoc">
<p>reduce a three-dimensional intensity distribution </p>
<p>this function reduces a three-dimensional intensity distribution to a two-dimensional intensity map. the given reduction function is applied once on each Z section.</p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramname">source</td><td>source wave. three-dimensional intensity distribution (image). the scales are carried over to the result waves.</td></tr>
<tr><td class="paramname">reduction_func</td><td>name of the reduction function to apply to the source data.</td></tr>
<tr><td class="paramname">reduction_param</td><td>string with reduction parameters as required by the specific reduction function.</td></tr>
<tr><td class="paramname">result_prefix</td><td>name prefix of result waves. a numeric index is appended to distinguish the results. the index starts at 1. existing waves are overwritten. </td></tr>
</table>
</dd>
</dl>
<p class="definition">Definition at line <a class="el" href="pearl-area-import_8ipf_source.html#l01198">1198</a> of file <a class="el" href="pearl-area-import_8ipf_source.html">pearl-area-import.ipf</a>.</p>
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@@ -958,7 +1031,7 @@ Licensed under the Apache License, Version 2.0 (the "License"); <br />
<p>set the dimension scales of an area detector dataset. </p>
<p>the intrinsic dimensions 0 and 1 are scaled according to the data source (currently supported: Prosilica cameras, Scienta electron analyser). the extra dimensions are scaled according to the scan. the latter requires that the positioner names and position values are available. </p>
<p class="definition">Definition at line <a class="el" href="pearl-area-import_8ipf_source.html#l00725">725</a> of file <a class="el" href="pearl-area-import_8ipf_source.html">pearl-area-import.ipf</a>.</p>
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@@ -982,7 +1055,7 @@ Licensed under the Apache License, Version 2.0 (the "License"); <br />
<p>the scan positioner name and its values must be available</p>
<dl class="todo"><dt><b><a class="el" href="todo.html#_todo000003">Todo:</a></b></dt><dd>incomplete </dd></dl>
<p class="definition">Definition at line <a class="el" href="pearl-area-import_8ipf_source.html#l01792">1792</a> of file <a class="el" href="pearl-area-import_8ipf_source.html">pearl-area-import.ipf</a>.</p>
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@@ -1005,7 +1078,7 @@ Licensed under the Apache License, Version 2.0 (the "License"); <br />
<p>set the energy and angle scales of an area detector dataset from the Scienta analyser. </p>
<p>the dimension labels of the energy and angle scales must be set correctly: AD_Dim0 = energy dimension; AD_Dim1 = angle dimension. these dimensions must be the first two dimensions of a multi-dimensional dataset. normally, AD_Dim0 is the X dimension, and AD_Dim1 the Y dimension. </p>
<p class="definition">Definition at line <a class="el" href="pearl-area-import_8ipf_source.html#l01687">1687</a> of file <a class="el" href="pearl-area-import_8ipf_source.html">pearl-area-import.ipf</a>.</p>
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@@ -1044,7 +1117,7 @@ Licensed under the Apache License, Version 2.0 (the "License"); <br />
<p>set up a one-dimensional wave for a line profile based on a 2D original wave. </p>
<p>redimensions the profile wave to the given dimension. copies the scale and dimension label of the given dimension. </p>
<p class="definition">Definition at line <a class="el" href="pearl-area-import_8ipf_source.html#l01133">1133</a> of file <a class="el" href="pearl-area-import_8ipf_source.html">pearl-area-import.ipf</a>.</p>
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@@ -1099,7 +1172,7 @@ Licensed under the Apache License, Version 2.0 (the "License"); <br />
</dl>
<dl class="section return"><dt>Returns</dt><dd>a copy of the reduction_param string, possibly modified by the reduction function. </dd></dl>
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@@ -1163,7 +1236,7 @@ Licensed under the Apache License, Version 2.0 (the "License"); <br />
<p>callback function for drag&amp;drop of HDF5 files into Igor. </p>
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</dl>
<dl class="section return"><dt>Returns</dt><dd>data folder reference of the attributes folder. the reference may be invalid (and default to root) if the folder cannot be found, cf. built-in DataFolderRefStatus function. </dd></dl>
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</dd>
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<a id="a4efc9178892310c9e2caf40c61d71bd7"></a>
<h2 class="memtitle"><span class="permalink"><a href="#a4efc9178892310c9e2caf40c61d71bd7">&#9670;&nbsp;</a></span>reduce_brick_worker()</h2>
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<td class="memname">static threadsafe variable reduce_brick_worker </td>
<td>(</td>
<td class="paramtype">funcref&#160;</td>
<td class="paramname"><em>reduction_func</em></td><td>)</td>
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<p>thread worker for adh5_reduce_brick </p>
<p>this function polls job data folders from thread group 0 and calls the reduction function on their contents. the result waves have prefix "redw_" and are saved in the job folder. </p>
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