33 lines
1.5 KiB
Plaintext
33 lines
1.5 KiB
Plaintext
#%Module1.0
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module-whatis "a software environment for subtomogram averaging of cryo-EM data"
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module-url "https://wiki.dynamo.biozentrum.unibas.ch/w/index.php/Main_Page"
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module-license "MIT (dynamo), MCR license (MCR library)"
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module-maintainer "Spencer Bliven <spencer.bliven@psi.ch>"
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module-help "
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Dynamo is a software environment for subtomogram averaging of cryo-EM data. In
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a full workflow, you would organize tomograms in catalogues, use them to pick
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particles and create alignment and classification projects to be run on
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different computing environments.
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Cite:
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1. Dynamo: A flexible, user-friendly development tool for subtomogram averaging
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of cryo-EM data in high-performance computing environments. Castaño-Díez D,
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Kudryashev M, Arheit M, Stahlberg H., J Struct Biol. 2012.
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2. Dynamo Catalogue: Geometrical tools and data management for particle picking
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in subtomogram averaging of cryo-electron tomograms Castaño-Díez D, Kudryashev
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M, Stahlberg H., in J Struct Biol. 2017 Feb; 197(2):135-144
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3. The Dynamo package for tomography and subtomogram averaging: components for
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MATLAB, GPU computing and EC2 Amazon Web Services Castaño-Díez D. in Acta
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Crystallographica Section D: Structural Biology 73 (6).
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4. Protocols for Subtomogram Averaging of Membrane Proteins in the Dynamo
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Software Package Navarro PP, Stahlberg H and Castaño-Díez D (2018). Front. Mol.
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Biosci. 5:82.
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"
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setenv DYNAMO_ROOT "$PREFIX/bin"
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# merlin-specific
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setenv MCR_CACHE_ROOT "/scratch/$::env(USER)"
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