PEET
Particle Estimateion for Electron Tomography
Installation
PEET is shipped as a self-expanding installation script. Run ./build to
install.
This module is usually used in combination with IMOD (etomo GUI).
Testing
calcFSCshould print the version number
Build notes
Linking the binary is a bit of a pain. It requires gcc to be loaded to provide relatively recent versions of libstdc++.so.6. I didn't fine what exact version Matlab MCR expects, but 9.5.0 seemed to work. MCR is linked dynamically at runtime through LD_LIBRARY_PATH. This is not set in the modulefile as expected, but rather in wrapper scripts which source particle.cfg. Sed commands in pbuild::install update this file so that it reads the loaded modules correctly. (Remark Nov. 2024: still true for version 1.17.0)
Versions
According to the website (INSTALL.TXT) the following Matlab is needed :
-1.17.0 : 2022b (Merlin7, automatically loads matlab)