Files
MX_Pmodule/EM/PEET
..
2024-12-19 13:00:56 +01:00
2024-12-19 13:00:56 +01:00
2024-12-19 13:00:56 +01:00
2024-12-19 13:00:56 +01:00

PEET

Particle Estimateion for Electron Tomography

Installation

PEET is shipped as a self-expanding installation script. Run ./build to install. This module is usually used in combination with IMOD (etomo GUI).

Testing

  • calcFSC should print the version number

Build notes

Linking the binary is a bit of a pain. It requires gcc to be loaded to provide relatively recent versions of libstdc++.so.6. I didn't fine what exact version Matlab MCR expects, but 9.5.0 seemed to work. MCR is linked dynamically at runtime through LD_LIBRARY_PATH. This is not set in the modulefile as expected, but rather in wrapper scripts which source particle.cfg. Sed commands in pbuild::install update this file so that it reads the loaded modules correctly. (Remark Nov. 2024: still true for version 1.17.0)

Versions

According to the website (INSTALL.TXT) the following Matlab is needed :

-1.17.0 : 2022b (Merlin7, automatically loads matlab)