bliven_s
308fd1c890
There are _cpu and _gpu flags available, which are selected based on fancy modulefile code (Thanks Achim)
58 lines
2.1 KiB
Plaintext
58 lines
2.1 KiB
Plaintext
#%Module
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module-whatis "crYOLO is a fast and accurate particle picking procedure for electron microscopy"
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module-url "http://sphire.mpg.de/wiki/doku.php?id=pipeline:window:cryolo"
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module-license "SPHIRE-crYOLO Complimentary Science Software License (http://sphire.mpg.de/wiki/doku.php?id=cryolo_license). Non-commercial academic and research purposes only"
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module-maintainer "Spencer Bliven <spencer.bliven@psi.ch>"
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module-help "
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CrYOLO is a fast and accurate particle picking procedure. It's based on
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convolutional neural networks and utilizes the popular You Only Look Once
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(YOLO) object detection system.
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* crYOLO makes picking fast – On a modern GPU it will pick your particles at
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up to 6 micrographs per second.
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* crYOLO makes picking smart – The network learns the context of particles
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(e.g. not to pick particles on carbon or within ice contamination )
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* crYOLO makes training easy – You might use a general network model and skip
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training completely. However, if the general model doesn't give you
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satisfactory results or if you would like to improve them, you might want
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to train a specialized model specific for your data set by selecting
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particles (no selection of negative examples necessary) on a small number
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of micrographs.
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"
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# Check for supported shell types
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set shelltype [module-info shelltype]
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switch -- $shelltype {
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"sh" {
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puts stdout "source \"\${ANACONDA_PREFIX}\"/admintools/conda_setup.sh;\n"
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}
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default {
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puts stderr "Shells of type '$shelltype' are NOT supported!"
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}
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}
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# Determine useflags and construct conda env name
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set list [split $V "_"]
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set version [lindex ${list} 0]
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set useflags [lrange ${list} 1 end]
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set flavour [lindex $useflags 0]
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set env_to_activate [string tolower ${P}]-${version}-${flavour}
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#puts stderr "P/V: $P/$V"
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#puts stderr "USEFLAG: [lindex $useflags 0]"
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#puts stderr "$env_to_activate"
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switch [module-info mode] {
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"load" {
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# Relies on the anaconda module being loaded since we need to update the path
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puts stdout "conda activate $env_to_activate;\n"
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}
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"unload" -
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"remove" {
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puts stdout "conda deactivate;\n"
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}
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}
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