Building a module for (P)elegant

Home page and official build instructions

Elgant is a software packages produced by the Accelerator Operations and Physics Group. It requires the EPICS build-system and SDDS. The EPICS build-system is completely based on Makefiles. This makes it a bit harder to compile and more error prone.

Instructions to setup epics/base, epics/extensions and to compile SDDS as well as elegant can be found here. The instructions to build from source are almost at the end of the page.

Instructions to build Pelegant

Getting required configuration files

SDDS and Elegant sources

Required Modules

module load gcc/8.4.0 gsl/2.6 OpenBLAS/0.3.10 mpich/3.2.1

module load gcc/8.4.0 gsl/2.6 lapack/3.9.0 openmpi/3.1.6

Setup Environment

SDDS_VERSION=4.3
ELEGANT_VERSION=2020.2.0
source "${PMODULES_ROOT}/config/modbuild.conf"
DOWNLOAD_DIR="${PMODULES_DISTFILESDIR}/elegant"
PREFIX="${PMODULES_ROOT}/MPI/elegant/${ELEGANT_VERSION}/${MPI}/${MPI_VERSION}/${COMPILER}/${COMPILER_VERSION}"

export EPICS_BASE="${PREFIX}/epics/base"
export HOST_ARCH=linux-x86_64
export EPICS_HOST_ARCH=linux-x86_64
export RPN_DEFNS="${PREFIX}/RPN_DEFNS/defns.rpn"
export PERLLIB="${PREFIX}/lib/perl"

ARGS=()
ARGS+=( "GNU_BIN=$GCC_DIR/bin" )
ARGS+=( "LD=/usr/bin/ld" )
ARGS+=( "AR=/usr/bin/ar -rc" )
ARGS+=( "RANLIB=/usr/bin/ranlib" )
ARGS+=( "EPICS_BASE=${EPICS_BASE}" )
ARGS+=( "SYSGSL=1")

#ARGS+=( "INSTALL_LOCATION=${PREFIX}" )
#ARGS+=( "INSTALL_LIB=${PREFIX}/lib" )
#ARGS+=( "INSTALL_SHRLIB=${PREFIX}/lib" )
#ARGS+=( "INSTALL_TCLLIB=${PREFIX}/lib" )
#ARGS+=( "INSTALL_BIN=${PREFIX}/bin" )

Prepare base build environment

EPICS base configuration

mkdir -p "${PREFIX}"
mkdir -p "${RPN_DEFNS%/*}"
cp "${DOWNLOAD_DIR}/defns.rpn" "${RPN_DEFNS}"
cd "${PREFIX}"
tar xvf "${DOWNLOAD_DIR}/epics.base.configure.tar.gz"
cd epics/base
make -e "${ARGS[@]}"

Unpack EPICS extensions and OAG apps configuration

ARGS+=( "TOOLS=${PREFIX}/bin")
cd "${PREFIX}"
tar xvf "${DOWNLOAD_DIR}/epics.extensions.configure.tar.gz"
tar xvf "${DOWNLOAD_DIR}/oag.apps.configure.tar.gz"
cd "${PREFIX}/oag/apps/configure"
sed -i "s/clean::/clean:/" RULES_PYTHON
make -e "${ARGS[@]}"

You have to fix the clean:: target in ${PREFIX}/oag/apps/configure/PYTHON_RULES

Build required tools and libraries from SDDS

cd "${PREFIX}"
tar xvf "${DOWNLOAD_DIR}/SDDS.${SDDS_VERSION}.tar.gz"
cd "${PREFIX}/epics/extensions/src/SDDS/"
sed -i -e  "s/\( sddspseudoinverse_SYS_LIB.*\)/\1 gfortran/" SDDSaps/pseudoInverse/Makefile
sed -i -e  "s/\( sddsmatrixop_SYS_LIBS.*\)/\1 gfortran/" SDDSaps/pseudoInverse/Makefile

make -e "${ARGS[@]}" -C png   && \
make -e "${ARGS[@]}"  


make -e "${ARGS[@]}" -C pgapack   && \

make -e "${ARGS[@]}" -C fftpack   && \
make -e "${ARGS[@]}" -C lzma      && \
make -e "${ARGS[@]}" -C matlib    && \
make -e "${ARGS[@]}" -C mdbcommon && \
make -e "${ARGS[@]}" -C mdblib    && \
make -e "${ARGS[@]}" -C mdbmth    && \
make -e "${ARGS[@]}" -C SDDSlib   && \
make -e "${ARGS[@]}" -C SDDSaps/pseudoInverse OP_SYS_LDLIBS=-lgfortran

make -e "${ARGS[@]}" -C meschach  && \
make -e "${ARGS[@]}" -C namelist  && \
make -e "${ARGS[@]}" -C rpns/code && \


make -e "${ARGS[@]}" -C SDDSlib clean
make    "${ARGS[@]}" MPI=1 -C SDDSlib

Compile elegant

cd "${PREFIX}" tar xvf "${DOWNLOAD_DIR}/elegant.${ELEGANT_VERSION}.tar.gz" cd "${PREFIX}/oag/apps/src/elegant" make -e "${ARGS[@]}" STATIC_BUILD=NO

Compile Pelegant

cd "${PREFIX}/epics/extensions/src/SDDS/"
make -e "${ARGS[@]}" -C SDDSlib clean
make    "${ARGS[@]}" MPI=1 -C SDDSlib
cd "${PREFIX}/oag/apps/src/elegant"
make clean
make    "${ARGS[@]}" STATIC_BUILD=NO Pelegant