#%Module1.0

module-whatis           "a software environment for subtomogram averaging of cryo-EM data"
module-url              "https://wiki.dynamo.biozentrum.unibas.ch/w/index.php/Main_Page"
module-license          "MIT (dynamo), MCR license (MCR library)"
module-maintainer       "Spencer Bliven <spencer.bliven@psi.ch>"

module-help             "
Dynamo is a software environment for subtomogram averaging of cryo-EM data.  In
a full workflow, you would organize tomograms in catalogues, use them to pick
particles and create alignment and classification projects to be run on
different computing environments. 

Cite:

1. Dynamo: A flexible, user-friendly development tool for subtomogram averaging
   of cryo-EM data in high-performance computing environments. Castaño-Díez D,
   Kudryashev M, Arheit M, Stahlberg H., J Struct Biol. 2012.
2. Dynamo Catalogue: Geometrical tools and data management for particle picking
   in subtomogram averaging of cryo-electron tomograms Castaño-Díez D, Kudryashev
   M, Stahlberg H., in J Struct Biol. 2017 Feb; 197(2):135-144
3. The Dynamo package for tomography and subtomogram averaging: components for
   MATLAB, GPU computing and EC2 Amazon Web Services Castaño-Díez D. in Acta
   Crystallographica Section D: Structural Biology 73 (6).
4. Protocols for Subtomogram Averaging of Membrane Proteins in the Dynamo
   Software Package Navarro PP, Stahlberg H and Castaño-Díez D (2018). Front. Mol.
   Biosci. 5:82.
"

setenv DYNAMO_ROOT "$PREFIX/bin"
# merlin-specific
setenv MCR_CACHE_ROOT "/scratch/$::env(USER)"