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7-add-autoproc

Rosetta_3.15

install_pandda

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olex2_1.5

olex2_v1.5

#10

#11

#12

#13

#14

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• ef1951d42a olex2: bundle image libs, run the cctbx first start at build time main duan_j 2026-10-16 18:21:46 +02:00
• 59b10215b3 olex2: bundle readline 8.2 in the sysroot; loader check reports instead of dying duan_j 2026-10-16 18:05:23 +02:00
• fffd36970c olex2: merge sysroot/lib64 (libgcc) into usr/lib64; make configure re-runnable duan_j 2026-10-16 17:55:10 +02:00
• f6b63e740d olex2: export OLEX2_ROOT from the modulefile, use it in the README checks duan_j 2026-10-16 17:49:09 +02:00
• 53a5753541 olex2: bundle glibc 2.39 + libstdc++ 14 sysroot, patchelf the executables duan_j 2026-10-16 17:46:54 +02:00
• 2b5bb570ca olex2: do not preserve ownership when copying into PREFIX duan_j 2026-10-16 17:26:28 +02:00
• 514ef49dbb failed build log for olex2, to debug duan_j 2026-10-16 17:24:11 +02:00
• 1eb66c483b olex2: rewrite recipe for RHEL9 - official archive with GUI + olex2c duan_j 2026-10-16 17:19:04 +02:00
• 8ebbe0c1cf log latest rugnux version duan_j 2026-10-05 13:40:53 +02:00
• 529085bfda update rugnux version to rc167 duan_j 2026-09-09 10:25:59 +02:00
• 80581c23e7 update new-module skill and record linking debug strategy in README duan_j 2026-09-04 13:40:04 +02:00
• 3db277e287 pymol-open-source: fix silent glm CMakeLists.txt collision - root cause of missing _cmd duan_jandClaude Fable 5 2026-09-03 11:10:37 +02:00
• 7beb62cf05 pymol-open-source: build with --no-build-isolation per upstream INSTALL duan_jandClaude Fable 5 2026-09-03 10:36:27 +02:00
• 7a5ca6638a pymol-open-source: wipe stale setuptools build tree + build wheel with --no-cache duan_jandClaude Fable 5 2026-09-03 10:26:17 +02:00
• 783c6325ad fix cache-clean hint: dist name is pymol, not pymol-open-source duan_jandClaude Fable 5 2026-09-03 10:21:45 +02:00
• 9767ebbb1d harden pymol-open-source install check: import _cmd, not just launcher duan_jandClaude Fable 5 2026-09-03 09:37:00 +02:00
• 41ec3b8894 added rc166 duan_j 2026-09-03 09:25:28 +02:00
• f748558fe4 update qfit to include missing package duan_j 2026-09-02 10:02:19 +02:00
• 77494991a6 update qfit to make qligand working duan_j 2026-09-02 09:26:34 +02:00
• 11d171f75d update autoPROC duan_j 2026-09-01 11:38:03 +02:00
• f8b2e907e8 update BUSTER duan_j 2026-09-01 11:36:37 +02:00
• 1fbb6c1c97 update qfit duan_j 2026-09-01 11:34:07 +02:00
• 6093b993d0 update adxv duan_j 2026-09-01 11:20:44 +02:00
• 5e09fbfec7 install qfit duan_j 2026-09-01 11:11:03 +02:00
• a9c84530f8 update pymol-open-source duan_j 2026-09-01 10:56:37 +02:00
• 339626a467 add adxv, imagemagick, and pymol-open-source duan_j 2026-09-01 10:43:13 +02:00
• 1cf8491a57 add pymol, but it needs a license... duan_j 2026-09-01 10:04:46 +02:00
• 2c336def42 update jfjoch_viewer config duan_j 2026-08-27 15:01:52 +02:00
• db90904255 install the rugnux apart from jfjoch_viewer duan_j 2026-08-27 14:57:03 +02:00
• 546ace238d installed rugnux 162 on ra duan_j 2026-08-25 14:10:06 +02:00
• 431ccdbbca update module file to highlight dependencies to cole ccp4/7.0 install_pandda duan_j 2026-08-24 22:48:24 +02:00
• 4ffc1b152d PanDDA2 1.0.0: new module, uv venv from sha-pinned xchem/PanDDA2 duan_jandClaude Fable 5 2026-08-24 20:43:11 +02:00
• cb65827159 PanDDA 0.2.14: new module via ccp4-python pip, ccp4/9.0 dep duan_jandClaude Fable 5 2026-08-24 20:23:38 +02:00
• 5f354dd5cb build jfjoch_viewer 1.0.0-rc161 duan_j 2026-08-19 15:57:38 +02:00
• d417a2a95e jfjoch_viewer: download versioned tarball from Gitea releases duan_jandClaude Fable 5 2026-08-19 14:37:58 +02:00
• 040c400a66 README: restore permissions escalation and PR invite lost in force push duan_jandClaude Fable 5 2026-08-19 12:59:02 +02:00
• 4415976b08 Update README.md duan_j 2026-08-19 11:47:30 +02:00
• 8593754ab3 README: credit tutorial participants, drop merged build-* branch section duan_jandClaude Fable 5 2026-08-19 11:44:25 +02:00
• 7dc7fdb139 Ignore all archive/installer formats to keep binaries out of history duan_jandClaude Fable 5 2026-08-19 08:21:36 +02:00
• bc64105537 emphasis again do not fill /var/tmp duan_j 2026-08-18 22:34:37 +02:00
• 1c8a83aa94 Sync new-module skill with current practice; README agent caveats duan_jandClaude Fable 5 2026-08-18 22:29:13 +02:00
• c3c38856b3 Docs overhaul: quickstart, current commands everywhere, credits duan_jandClaude Fable 5 2026-08-18 22:18:37 +02:00
• 3b0d69d326 Merge remote-tracking branch 'origin/build-xtrapol8' duan_j 2026-08-18 21:54:18 +02:00
• 256cc30ebc Merge remote-tracking branch 'origin/build-pymol' duan_j 2026-08-18 21:54:18 +02:00
• 1e8c478d72 Merge remote-tracking branch 'origin/build-phenix' duan_j 2026-08-18 21:54:18 +02:00
• cd986ddd24 Merge remote-tracking branch 'origin/build-crystfel' duan_j 2026-08-18 21:54:18 +02:00
• 371df4d3a8 Merge remote-tracking branch 'origin/build-ccp4' duan_j 2026-08-18 21:54:18 +02:00
• f21bc10dc0 README: consolidate build tips, ship new-module skill in-repo duan_jandClaude Fable 5 2026-08-18 21:42:47 +02:00
• c0e4e55fb9 ccp4 README: document explicit --tmpdir/--distdir build command duan_jandClaude Fable 5 2026-08-18 20:45:49 +02:00
• fcedf651b6 ccp4 README: BINARY.setup py-compile phase is also slow duan_jandClaude Fable 5 2026-08-18 20:37:55 +02:00
• 89a9c682fe ccp4 README: note that install is slow, not stuck duan_jandClaude Fable 5 2026-08-18 20:27:34 +02:00
• 1332910115 ccp4: download via wget --continue in custom prep duan_jandClaude Fable 5 2026-08-18 20:14:26 +02:00
• 3bf22a4b7e ccp4: die-guard install steps, glob ccp4-* top dir duan_jandClaude Fable 5 2026-08-18 20:07:19 +02:00
• 8f1b3bf3a1 ccp4 README: fix modbuild flags per 2.1.3 --help duan_jandClaude Fable 5 2026-08-18 19:58:07 +02:00
• 273569c87e Add ccp4 module: vendor tarball, non-interactive BINARY.setup duan_jandClaude Fable 5 2026-08-18 19:44:06 +02:00
• 809be4432c added readme duan_j 2026-08-18 19:23:19 +02:00
• 92a616ea79 add download of the tar.gz from tag to build file of Xtrapol8 duan_j 2026-08-18 19:22:16 +02:00
• b70f3dfc57 testing git Emma Victoria Beale 2026-08-18 16:36:49 +02:00
• 6abd7ea855 use local meson, need to pip install meson > 0.60 at home folder Emma Victoria Beale 2026-08-18 15:25:02 +02:00
• 3f57f83951 added version 1.19.2-4158 “marsh_m” 2026-08-18 15:56:41 +02:00
• 2ddb347ec6 update config for crystfel, build from source dir with meson duan_j 2026-08-18 15:44:56 +02:00
• 94cd0d8080 Xtrapol8: add 1.2.9, ccp4 runtime dep, and missing modulefile env duan_jandClaude Fable 5 2026-08-18 15:29:16 +02:00
• 6c2fd9be47 pymol: switch to incentive 3.1.8 Linux bundle from pymol.org duan_jandClaude Fable 5 2026-08-18 15:11:19 +02:00
• 0e6199871f Add crystfel 0.13.0 module: meson build from DESY source tarball duan_jandClaude Fable 5 2026-08-18 14:51:14 +02:00
• 62a0c97aa6 Merge branch 'build-careless' duan_j 2026-08-18 13:51:41 +02:00
• ef600bb06e xdsgui: add shelx, ccp4, xds_viewer to runtime deps duan_jandClaude Fable 5 2026-08-18 12:31:00 +02:00
• 2df67c7dba Add xdsgui module: prebuilt binary + generate_XDS.INP from XDS wiki duan_jandClaude Fable 5 2026-08-18 12:15:14 +02:00
• b02b3e36f3 Document install verification checklist in careless README duan_jandClaude Fable 5 2026-08-18 11:52:48 +02:00
• a1e15f765d use common cache dir to save disk space and time duan_j 2026-08-18 11:17:38 +02:00
• 7544d0d952 Revert "Split careless into CPU module and careless-gpu using cuda/12.8.1 module" duan_j 2026-08-18 11:14:19 +02:00
• cc44565e35 Revert "Drop careless-gpu: the [cuda] pip extra install covers GPU and CPU nodes" duan_j 2026-08-18 11:14:13 +02:00
• f6c2f5a650 Drop careless-gpu: the [cuda] pip extra install covers GPU and CPU nodes duan_jandClaude Fable 5 2026-08-18 11:13:19 +02:00
• b55d6c1d91 Split careless into CPU module and careless-gpu using cuda/12.8.1 module duan_jandClaude Fable 5 2026-08-18 11:07:12 +02:00
• f983b0a174 careless: put uv cache under PREFIX, home quota too small for TF wheels duan_jandClaude Fable 5 2026-08-18 10:55:59 +02:00
• 6f7523601b careless: call uv by explicit path, modbuild strips ~/.local/bin from PATH duan_jandClaude Fable 5 2026-08-18 10:54:10 +02:00
• c0410dfe2d careless: build venv with uv instead of conda (anaconda.com blocked on Ra) duan_jandClaude Fable 5 2026-08-18 10:51:44 +02:00
• 0b8fc62557 test module skill with careless duan_j 2026-08-18 10:45:20 +02:00
• 04458082c2 Fix module path: /opt/psi/MX, not /etc/psi/MX duan_jandClaude Fable 5 2026-08-14 14:47:45 +02:00
• ad8eeca28d Update READMEs: Pmodules wiki background, unx-mx_adm permissions, build-* propagation notes duan_jandClaude Fable 5 2026-08-14 14:45:38 +02:00
• fd8519dd49 Merge branch 'dials' into main (PR #20): add autoPROC module duan_j 2026-08-14 14:26:05 +02:00
• f9b3121b47 update module header from Pmodule to Module duan_j 2026-08-14 11:45:14 +02:00
• bbfb701244 added jfjoch_viewer rc.160, changed 1st line in modulefile from Pmodule to Module to show in the new module duan_j 2026-08-14 11:37:24 +02:00
• b5494074e0 updated README.md duan_j 2026-08-12 16:07:29 +02:00
• 1a62e98370 update DIALS: rememebr to add support to /entry/data/data, see issue in aareproc repo duan_j 2026-08-05 09:16:14 +02:00
• 0e212b1e91 ignore more files duan_j 2026-08-14 11:46:55 +02:00
• c2c20f07f3 update module header from Pmodule to Module duan_j 2026-08-14 11:45:14 +02:00
• 19db414923 update gitignore duan_j 2026-08-14 11:42:30 +02:00
• f3b99e2144 added jfjoch_viewer rc.160, changed 1st line in modulefile from Pmodule to Module to show in the new module duan_j 2026-08-14 11:37:24 +02:00
• cdb9073fa2 updated README.md duan_j 2026-08-12 16:07:29 +02:00
• d443adf247 update DIALS: rememebr to add support to /entry/data/data, see issue in aareproc repo duan_j 2026-08-05 09:16:14 +02:00
• 5eff01e86e add autoPROC pmodule duan_jandClaude Fable 5 2026-07-17 18:25:29 +02:00
• 95cd92496d add jfjoch_viewer 1.0.0-rc.158 duan_j 2026-07-13 14:42:57 +02:00
• 17ade5eb72 build jfjoch viewer duan_j 2026-07-06 15:45:33 +02:00
• d507342f06 compile Xtrapol8 v1.2.8 with phenix 1.21 duan_j 2026-03-26 17:06:02 +01:00
• 0949e0f218 update readme and give solution for unbound variable problem, also including naming convension suggested by Achim duan_j 2026-03-26 16:07:58 +01:00
• a753597423 updated XDS version to 20251103 duan_j 2025-12-21 17:06:27 +01:00
• ae98ae3e47 Merge pull request 'Changed build to keep the same structure of the installation as the zip archive' (#18) from olex2_v1.5 into main duan_j 2025-11-21 16:00:35 +01:00
• 52fcf485c8 Changed build to keep the same structure of the installation as the zip archive olex2_v1.5 agosti_j 2025-11-21 15:56:14 +01:00
• 3db667c3ea Merge pull request 'Add olex2 v1.5' (#17) from olex2_1.5 into main duan_j 2025-11-21 12:01:12 +01:00
• c72e6d47b2 Add olex2 v1.5 agosti_j 2025-11-20 16:40:24 +01:00