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64 Commits

Author SHA1 Message Date
viessm_h 42a6bd0bf8 add relion 5 stable with performance flags 2025-03-25 15:47:11 +01:00
assman_g a23cb82fe4 delete swan file 2025-02-11 10:37:41 +01:00
assman_g a827e8e33d relion5.0.0 on merlin7 2025-02-11 10:35:56 +01:00
assman_g 51066a5431 new DeepEMhancer merlin7 2024-12-19 13:47:10 +01:00
assman_g 0fe0086db3 versoin 2.99.66 merlin7 2024-12-19 13:15:34 +01:00
assman_g 14ad23e527 new versoin 1.17.0 and Merlin7 2024-12-19 13:00:56 +01:00
assman_g 51547afd76 add topaz merlin7 2024-12-16 15:20:00 +01:00
assman_g 8e08282bb9 new version 5.0.0 on merlin7 2024-12-16 14:16:34 +01:00
assman_g 6373496851 1.9.9 for merlin7 2024-12-05 16:26:39 +01:00
assman_g 3a53e81e88 add napari module 2024-12-05 15:33:42 +01:00
assman_g 6a28c61c08 add cryocare module 2024-07-24 11:51:17 +02:00
assman_g 18e0912f98 add tomodrgn 2024-05-24 11:54:22 +02:00
assman_g 18454b7782 Merge branch 'relion5-mc-fix' into 'master' 
Set MotionCor2 path based on the loaded cuda version.

Closes #275

See merge request Pmodules/buildblocks!432
 2024-04-03 16:25:12 +02:00
assman_g d9d6ec9f98 relion5.0 update 2024-04-03 16:13:27 +02:00
bliven_s 190c57cf82 Set MotionCor2 path based on the loaded cuda version. 
Fixes #275.
 2024-04-02 12:08:01 +02:00
assman_g edb6f50ad2 add line to README 2023-10-31 13:59:04 +01:00
Assmann Greta Marie 892dbbdc45 add finddqe build folder 2023-10-30 17:01:11 +01:00
bliven_s cef27d8920 Built dynamo/1.1.538 2023-08-16 11:19:04 +02:00
bliven_s c34c70f631 Mark PEET/1.16.0 as stable 2023-08-02 13:00:50 +02:00
bliven_s f6a3445a09 Add IMOD/4.11.24 release 2023-07-31 17:52:58 +02:00
bliven_s 708e207ca2 Add IMOD/4.12.50-beta 
Beta versions come from a different URL
 2023-07-31 17:47:01 +02:00
bliven_s a3a83885e0 Mark IMOD/4.11.20 as stable 2023-07-31 17:34:07 +02:00
germann_e 61f03792d2 ADD: EMAN build file & EMAN/2.99.47 installatioN 2023-05-26 09:16:40 +00:00
bliven_s ea8a7a0d97 Add MotionCor2/1.6.4 2023-04-03 16:47:27 +02:00
bliven_s 5e881abe45 Release relion 4.0.1 2023-03-22 16:33:08 +01:00
bliven_s 06173e5ed2 Release PEET 1.16.0 2023-01-30 11:31:31 +01:00
bliven_s e783deb71e Create ctffind4 build script & install 4.1.14 2022-11-30 17:01:09 +01:00
bliven_s 7507f282c8 Marking MotionCor2 stable 2022-11-30 16:58:46 +01:00
bliven_s 98daea70bd Add new MotionCor2 variants 
Also standardize the MotionCor2 wrapper so that it's the same for all
module versions regardless of cuda support
 2022-11-10 16:23:05 +01:00
bliven_s 4e437aefde Install IMOD/4.11.20 
This is the first version to use modbuild; IMOD/4.9.5 was installed
manually.
 2022-11-03 13:11:32 +01:00
bliven_s a09fe1e77b Merge branch 'cryodrgn' into 'master' 
Create cryodrgn/1.1.0 pmodule

See merge request Pmodules/buildblocks!354
 2022-10-19 15:11:07 +00:00
bliven_s 052151c0a9 Create cryodrgn pmodule 
Wraps the conda environment
 2022-10-19 17:06:27 +02:00
bliven_s fee9a03019 Merge branch 'peet' into 'master' 
New module: PEET

See merge request Pmodules/buildblocks!353
 2022-10-12 14:22:28 +00:00
bliven_s 05653093ff New module: PEET 2022-10-12 16:20:40 +02:00
bliven_s db36627b60 Deprecating older relion versions 
These depended on deprecated openmpi/4.0.4_slurm, so they have to also
be deprecated.
 2022-10-06 17:57:00 +02:00
bliven_s 667790976d Updating relion release status 2022-10-06 17:48:45 +02:00
viessm_h 2eca89992b add relion 4.0.0 2022-09-29 14:17:07 +02:00
bliven_s 0fa181b856 Deprecating crYOLO/1.2.3 and moving other versions to stable 
1.2.3 was based on miniconda and should be removed in the future
 2022-02-16 16:45:06 +01:00
bliven_s bad1541b54 Add relion/4.0-beta 2021-09-30 13:58:16 +02:00
bliven_s bc2425090a Add relion/3.1.3 2021-09-30 12:14:45 +02:00
bliven_s 1f1a754c5d Fix dependency problem iun relion/3.0.8-1 2021-07-26 15:39:38 +02:00
bliven_s 221f141241 Relion 3.1.2 and 3.1.1-1 
3.1.1-1 is compiled against cuda-aware openmpi/4.0.5_slurm (CUDA
11.0.3), which fixes some bugs
 2021-03-05 15:25:08 +01:00
bliven_s 782e89c578 Major Relion recompilation using newer openmpi 
- Add relion/2.1 with openmpi/4.0.4_slurm
- Add relion/3.0.8-1 with openmpi/4.0.5_slurm
- Mark 3.1.0-1 and 3.1.1 as stable
- Deprecate all older versions (betas and versions with openmpi/3.1.4
  and older, which don't work with the current configuration)
 2021-01-22 21:34:09 +01:00
bliven_s 94901de619 Fix dynamo license in modulefile 2020-12-17 17:16:41 +01:00
bliven_s bc1043cc1c Merge branch 'dynamo' into 'master' 
Initial dynamo/1.1.514 buildblock

See merge request Pmodules/buildblocks!157
 2020-12-17 11:17:25 +01:00
bliven_s 21c3278e96 Initial dynamo/1.1.514 buildblock 2020-12-17 11:13:18 +01:00
bliven_s 51436c8166 Adding preallocated scripts 2020-12-11 15:28:02 +01:00
bliven_s 451d3db6f4 Add cisTEM modulefile 
No new versions are available
 2020-12-11 15:22:36 +01:00
bliven_s 3d0560a0f3 Release relion 3.1.1 2020-11-18 21:09:21 +01:00
bliven_s 5bdf6b2952 Add Gctf buildblock 
No new versions were installed, but this documents the build process and
updates the modulefile.
 2020-11-18 21:09:20 +01:00