From 4c760838f49a18d2810c9c881d5cd14b37ff34b1 Mon Sep 17 00:00:00 2001
From: Achim Gsell <achim.gsell@psi.ch>
Date: Mon, 2 Jul 2018 13:07:39 +0200
Subject: [PATCH 1/8] lammps/files/lammps-2018.3.tar.gz added

---
 .gitattributes                        | 1 +
 MPI/lammps/2018/variants              | 1 +
 MPI/lammps/files/lammps-2018.3.tar.gz | 3 +++
 3 files changed, 5 insertions(+)
 create mode 100644 .gitattributes
 create mode 100644 MPI/lammps/2018/variants
 create mode 100644 MPI/lammps/files/lammps-2018.3.tar.gz

diff --git a/.gitattributes b/.gitattributes
new file mode 100644
index 0000000..f087b42
--- /dev/null
+++ b/.gitattributes
@@ -0,0 +1 @@
+*.tar.gz filter=lfs diff=lfs merge=lfs -text
diff --git a/MPI/lammps/2018/variants b/MPI/lammps/2018/variants
new file mode 100644
index 0000000..b74e7a5
--- /dev/null
+++ b/MPI/lammps/2018/variants
@@ -0,0 +1 @@
+lammps/2018.3	unstable	gcc/7.3.0 openmpi/3.0.1
diff --git a/MPI/lammps/files/lammps-2018.3.tar.gz b/MPI/lammps/files/lammps-2018.3.tar.gz
new file mode 100644
index 0000000..f85294c
--- /dev/null
+++ b/MPI/lammps/files/lammps-2018.3.tar.gz
@@ -0,0 +1,3 @@
+version https://git-lfs.github.com/spec/v1
+oid sha256:2a00bda549f0bc75196ae58c9176198af03c3ce9a79640ecf1a521fc32978002
+size 124306996

From 443b3b092ea3820516930f21fed54451eee5fd8c Mon Sep 17 00:00:00 2001
From: Achim Gsell <achim.gsell@psi.ch>
Date: Mon, 2 Jul 2018 13:11:19 +0200
Subject: [PATCH 2/8] netcdf/build reviewd, build Fortran interface

---
 HDF5/netcdf/build | 18 ++++++++++++++++--
 1 file changed, 16 insertions(+), 2 deletions(-)

diff --git a/HDF5/netcdf/build b/HDF5/netcdf/build
index b013a6f..52e6fc8 100755
--- a/HDF5/netcdf/build
+++ b/HDF5/netcdf/build
@@ -1,5 +1,7 @@
 #!/usr/bin/env modbuild
 
+SOURCE_URL="https://www.unidata.ucar.edu/downloads/$P/ftp/$P-$V.tar.gz"
+
 pbuild::pre_configure() {
 	:
 }
@@ -15,12 +17,24 @@ pbuild::configure() {
 		--prefix="${PREFIX}" \
 		--enable-netcdf-4 \
 		--with-pic \
+		--enable-pnetcdf \
+		--enable-remote-fortran-bootstrap \
 		|| exit 1
 }
 
+pbuild::build() {
+	make check
+	make 
+	make install
+	make build-netcdf-fortran
+	make install-netcdf-fortran
+}
+
+pbuild::install() {
+	:
+}
+
 pbuild::add_to_group 'HDF5'
-pbuild::set_runtime_dependencies "${COMPILER}" "${MPI}" 'hdf5'
-pbuild::set_build_dependencies   "${COMPILER}" "${MPI}" 'hdf5'
 pbuild::set_docfiles 'COPYRIGHT' 'README.md' 'RELEASE_NOTES.md'
 pbuild::make_all
 

From 16c0a5b67653d0264b1e8d6b5c7dd50bf78a0577 Mon Sep 17 00:00:00 2001
From: Achim Gsell <achim.gsell@psi.ch>
Date: Mon, 2 Jul 2018 13:12:40 +0200
Subject: [PATCH 3/8] mpc: review, variant for 1.1.0 with gmp/6.1.2 and
 mpfr/4.0.1 added

---
 Libraries/mpc/1/variants |  1 +
 Libraries/mpc/build      | 11 +++++------
 2 files changed, 6 insertions(+), 6 deletions(-)

diff --git a/Libraries/mpc/1/variants b/Libraries/mpc/1/variants
index 97455ac..6c43014 100644
--- a/Libraries/mpc/1/variants
+++ b/Libraries/mpc/1/variants
@@ -3,3 +3,4 @@ mpc/1.0.3	stable		b:gmp/6.1.0 b:mpfr/3.1.4
 mpc/1.0.3-1	stable		b:gmp/6.1.1 b:mpfr/3.1.4
 mpc/1.0.3-2	stable		b:gmp/6.1.2 b:mpfr/3.1.5
 mpc/1.1.0	stable		b:gmp/6.1.2 b:mpfr/4.0.0
+mpc/1.1.0-1	unstable	b:gmp/6.1.2 b:mpfr/4.0.1
diff --git a/Libraries/mpc/build b/Libraries/mpc/build
index 0b67874..be22992 100755
--- a/Libraries/mpc/build
+++ b/Libraries/mpc/build
@@ -1,6 +1,10 @@
 #!/usr/bin/env modbuild
 
-SOURCE_URL="ftp://ftp.gnu.org/gnu/$P/$P-$V_MAJOR.$V_MINOR.$V_PATCHLVL.tar.gz"
+module use 'Libraries'
+
+pbuild::set_source_url "ftp://ftp.gnu.org/gnu/${P}/${P}-${V_PKG}.tar.gz"
+pbuild::add_to_group 'Libraries'
+pbuild::use_cc '/usr/bin/cc'
 
 pbuild::configure() {
 	"${MODULE_SRCDIR}"/configure \
@@ -11,10 +15,5 @@ pbuild::configure() {
 		|| exit 1
 }
 
-# use system gcc to compile
-declare -rx CC=gcc
-
-module use 'Libraries'
-pbuild::add_to_group 'Libraries'
 pbuild::make_all
 

From 249b5e7315efe3b823377f9b349de3e5a2f2e0cb Mon Sep 17 00:00:00 2001
From: Achim Gsell <achim.gsell@psi.ch>
Date: Mon, 2 Jul 2018 13:13:28 +0200
Subject: [PATCH 4/8] mpfr: version 4.0.1 added

---
 Libraries/mpfr/4/variants | 1 +
 1 file changed, 1 insertion(+)

diff --git a/Libraries/mpfr/4/variants b/Libraries/mpfr/4/variants
index cec1cb1..3d8e833 100644
--- a/Libraries/mpfr/4/variants
+++ b/Libraries/mpfr/4/variants
@@ -1 +1,2 @@
 mpfr/4.0.0      stable          b:gmp/6.1.2
+mpfr/4.0.1      stable          b:gmp/6.1.2

From d5b59c1a96e86b3f3d2ee618762fd93ed8f325c9 Mon Sep 17 00:00:00 2001
From: Achim Gsell <achim.gsell@psi.ch>
Date: Mon, 2 Jul 2018 13:14:08 +0200
Subject: [PATCH 5/8] lammps/build reviewed

---
 MPI/lammps/build | 11 +++++------
 1 file changed, 5 insertions(+), 6 deletions(-)

diff --git a/MPI/lammps/build b/MPI/lammps/build
index df7bb75..5dd6318 100755
--- a/MPI/lammps/build
+++ b/MPI/lammps/build
@@ -1,7 +1,10 @@
 #!/usr/bin/env modbuild
 
-SOURCE_URL="lammps-2017.8.tar.gz"
-
+pbuild::add_to_group 'MPI'
+pbuild::set_download_url="file:///lammps-2017.8.tar.gz"
+pbuild::set_docfiles \
+		LICENSE \
+		README
 pbuild::compile_in_sourcetree
 
 pbuild::configure() {
@@ -18,9 +21,5 @@ pbuild::install() {
 	strip "${PREFIX}/bin/lmp_omp"
 }
 
-pbuild::add_to_group 'MPI'
-pbuild::set_docfiles \
-		LICENSE \
-		README
 pbuild::make_all
 

From 12f9f2466e48bd192cc1aadc063a6f5193a5cc4b Mon Sep 17 00:00:00 2001
From: Achim Gsell <achim.gsell@psi.ch>
Date: Mon, 2 Jul 2018 13:15:03 +0200
Subject: [PATCH 6/8] emacs/25/variants: release version 25.3 as stable

---
 Tools/emacs/25/variants | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/Tools/emacs/25/variants b/Tools/emacs/25/variants
index c8c3e1b..c131366 100644
--- a/Tools/emacs/25/variants
+++ b/Tools/emacs/25/variants
@@ -1,2 +1,2 @@
 emacs/25.1 stable b:libungif/4.1.4 b:tiff/4.0.3
-emacs/25.3 unstable b:libungif/4.1.4 b:tiff/4.0.9
+emacs/25.3 stable b:libungif/4.1.4 b:tiff/4.0.9

From d88ea6b84600e20388d24b821476d92aa5d5424f Mon Sep 17 00:00:00 2001
From: Achim Gsell <achim.gsell@psi.ch>
Date: Mon, 2 Jul 2018 13:16:13 +0200
Subject: [PATCH 7/8] gnuplot: build-script reviewed, version 5.2.4 added to
 variants

---
 Tools/gnuplot/5/variants | 1 +
 Tools/gnuplot/build      | 6 +++---
 2 files changed, 4 insertions(+), 3 deletions(-)

diff --git a/Tools/gnuplot/5/variants b/Tools/gnuplot/5/variants
index 1093a84..988e97d 100644
--- a/Tools/gnuplot/5/variants
+++ b/Tools/gnuplot/5/variants
@@ -1,3 +1,4 @@
 gnuplot/4.6.3	stable
 gnuplot/5.0.0	stable
 gnuplot/5.2.0	stable
+gnuplot/5.2.4	stable
diff --git a/Tools/gnuplot/build b/Tools/gnuplot/build
index f321704..d774601 100755
--- a/Tools/gnuplot/build
+++ b/Tools/gnuplot/build
@@ -1,6 +1,8 @@
 #!/usr/bin/env modbuild
 
-SOURCE_URL="https://sourceforge.net/projects/gnuplot/files/$P/$V/$P-$V.tar.gz"
+pbuild::add_to_group 'Tools'
+pbuild::set_source_url "https://sourceforge.net/projects/gnuplot/files/$P/$V/$P-$V.tar.gz"
+pbuild::set_docfiles 'Copyright' 'ChangeLog' 'NEWS' 'README'
 
 pbuild::configure() {
 	"${MODULE_SRCDIR}"/configure \
@@ -10,8 +12,6 @@ pbuild::configure() {
 		|| exit 1
 }
 
-pbuild::add_to_group 'Tools'
-pbuild::set_docfiles 'Copyright' 'ChangeLog' 'NEWS' 'README'
 pbuild::make_all
 
 # Local Variables:

From 7189810a8d184950b78ab179d70acb7e3239d497 Mon Sep 17 00:00:00 2001
From: Achim Gsell <achim.gsell@psi.ch>
Date: Mon, 2 Jul 2018 16:13:28 +0200
Subject: [PATCH 8/8] lammps-2018.3.tar.gz moved to repository
 Pmodules/download

---
 MPI/lammps/files/lammps-2018.3.tar.gz | 3 ---
 1 file changed, 3 deletions(-)
 delete mode 100644 MPI/lammps/files/lammps-2018.3.tar.gz

diff --git a/MPI/lammps/files/lammps-2018.3.tar.gz b/MPI/lammps/files/lammps-2018.3.tar.gz
deleted file mode 100644
index f85294c..0000000
--- a/MPI/lammps/files/lammps-2018.3.tar.gz
+++ /dev/null
@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:2a00bda549f0bc75196ae58c9176198af03c3ce9a79640ecf1a521fc32978002
-size 124306996