mx/MX_Pmodule
1
0
Fork 0
Code Issues 1 Pull Requests Actions Packages Projects Releases Wiki Activity

relion5.0 update

Browse Source
This commit is contained in:
assman_g
2024-04-03 16:13:27 +02:00
parent e44af53b40
commit d9d6ec9f98
4 changed files with 61 additions and 3 deletions
Download Patch File Download Diff File Expand all files Collapse all files
EM/relion/modulefile
+4 -2
View File
@@ -3,7 +3,7 @@
module-whatis "3D reconstructions or 2D class averages in electron cryo-microscopy (cryo-EM)"
module-url "https://www2.mrc-lmb.cam.ac.uk/relion/index.php/Main_Page"
module-license "GPLv2 license"
module-maintainer "Spencer Bliven <spencer.bliven@psi.ch>"
module-maintainer "Greta Assmann <greta.assmann@psi.ch>"
module-help "
RELION (for REgularised LIkelihood OptimisatioN, pronounce rely-on) is a
@@ -41,7 +41,9 @@ setenv RELION_SUMMOVIE_EXECUTABLE /opt/psi/EM/Summovie/1.0.2/bin/sum_movie_openm
setenv RELION_CTFFIND_EXECUTABLE /opt/psi/EM/ctffind4/4.1.8/bin/ctffind
setenv RELION_GCTF_EXECUTABLE /opt/psi/EM/Gctf/1.06/bin/Gctf
setenv RELION_RESMAP_EXECUTABLE /opt/psi/EM/ResMap/1.1.4/bin/ResMap
setenv RELION_TOPAZ_EXECUTABLE /opt/psi/EM/relion/5.0-sp/conda_env/5.0-beta/bin/topaz
setenv RELION_PYTHON_EXECUTABLE /opt/psi/EM/relion/5.0-sp/conda_env/5.0-beta/bin/python
setenv RELION_TORCH_HOME_PATH /opt/psi/EM/relion/5.0-sp/torch
# Version-specific variables
setenv RELION_QSUB_TEMPLATE /opt/psi/EM/relion/$V/scripts/multi_gpu.sh
setenv RELION_MOTIONCOR2_EXECUTABLE /opt/psi/EM/MotionCor2/1.4.0/bin/MotionCor2