Add new MotionCor2 variants

Also standardize the MotionCor2 wrapper so that it's the same for all
module versions regardless of cuda support
This commit is contained in:
2022-11-10 16:09:27 +01:00
parent 58881d8169
commit 98daea70bd
4 changed files with 26 additions and 0 deletions

21
EM/MotionCor2/bin/MotionCor2 Executable file
View File

@@ -0,0 +1,21 @@
#!/bin/bash
# Script directory. Better than $MOTIONCOR2_HOME/bin since it can be called without loading modules.
BIN="$( cd "$( dirname "${BASH_SOURCE[0]}" )" >/dev/null 2>&1 && pwd )"
if [ -z ${CUDA_VERSION} ]; then
echo 'MotionCor2 requires the cuda module. Run `module load cuda/<version>`' >&2
exit 1
fi
CUDA=$(echo "${CUDA_VERSION}" | sed -r 's/([0-9]+)\.([0-9]+)(\..*)/\1\2/')
EXE=$(echo "$BIN"/MotionCor2_*_Cuda${CUDA}*)
#echo "Running $EXE"
if [ ! -x "$EXE" ]; then
echo "MotionCor2/$MOTIONCOR2_VERSION is not compatible with cuda/$CUDA_VERSION" >&2
exit 1
fi
exec "$EXE" "$@"