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Merge branch 'master' into 'openmpi_slurm'

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# Conflicts:
#   Compiler/openmpi/modulefile
This commit is contained in:
caubet_m
2020-09-18 13:05:12 +02:00
parent b2dc06e2df a454593f55
commit 5352d620fd
77 changed files with 500 additions and 390 deletions
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3
Compiler/OpenBLAS/files/variants.rhel6
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@@ -6,3 +6,6 @@ OpenBLAS/0.2.20_omp stable gcc/7.3.0
OpenBLAS/0.2.20 stable intel/17.4
OpenBLAS/0.3.7 stable gcc/{7.4.0,8.3.0,9.2.0}
OpenBLAS/0.3.9 stable gcc/{7.5.0,8.4.0,9.3.0,10.1.0}
OpenBLAS/0.3.10 stable gcc/{7.5.0,8.4.0,9.3.0,10.1.0}

60
Compiler/boost/build
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@@ -1,44 +1,44 @@
#!/usr/bin/env modbuild
pbuild::set_download_url "https://netcologne.dl.sourceforge.net/project/${P}/${P}/$V/${P}_${V_PKG//./_}.tar.gz"
#pbuild::set_download_url "https://dl.bintray.com/boostorg/release/${V_PKG}/source/${P}_${V_PKG//./_}.tar.gz"
#pbuild::set_download_url "https://netcologne.dl.sourceforge.net/project/$P/$P/$V/$P_${V_MAJOR}_${V_MINOR}_${V_PATCHLVL}.tar.gz"
pbuild::set_download_url "https://dl.bintray.com/boostorg/release/${V_PKG}/source/${P}_${V_PKG//./_}.tar.gz"
pbuild::add_to_group 'Compiler'
BOOST_BUILD_PATH="${BUILD_DIR}"
pbuild::configure() {
cd "${SRC_DIR}"
"${SRC_DIR}"/bootstrap.sh \
--prefix="${PREFIX}" \
--with-libraries=all \
--with-python-root="${PYTHON_PREFIX}" \
|| exit 1
TOOLSET=''
pbuild::pre_configure() {
case "${COMPILER}" in
gcc )
TOOLSET=gcc
;;
* )
std::die 1 "Unsupported compiler!"
;;
esac
}
pbuild::compile() {
cd "${SRC_DIR}"
./b2 \
--build-type=minimal \
--build-dir="${BUILD_DIR}" \
--layout=system \
cd "${SRC_DIR}"
./bootstrap.sh \
--prefix="${PREFIX}" \
--with-toolset=${TOOLSET} \
--without-libraries=python \
|| exit 1
./b2 \
--build-dir="${BUILD_DIR}" \
--layout=system \
--without-python \
--without-mpi \
variant=release \
link=shared,static \
threading=multi \
stage
toolset=${TOOLSET} \
variant=release \
link=shared,static \
threading=multi \
install -j 3 \
|| exit 1
}
pbuild::install() {
cd "${SRC_DIR}"
./b2 \
--build-type=minimal \
--build-dir="${BUILD_DIR}" \
--layout=system \
--without-mpi \
variant=release \
link=shared,static \
threading=multi \
install
:
}

39
Compiler/boost/files/variants
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@@ -1,39 +0,0 @@
boost/1.55.0 stable gcc/4.7.4 b:Python/3.4.0
boost/1.55.0 stable gcc/4.8.3 b:Python/3.4.0
boost/1.55.0 stable gcc/4.8.4 b:Python/3.4.0
boost/1.55.0 stable gcc/4.8.5 b:Python/2.7.11
boost/1.55.0 stable gcc/4.9.2 b:Python/3.4.0
boost/1.57.0 stable gcc/4.8.2 b:Python/3.4.0
boost/1.58.0 stable gcc/4.8.4 b:Python/3.4.0
boost/1.58.0 stable gcc/4.8.5 b:Python/2.7.11
boost/1.58.0 stable gcc/4.9.3 b:Python/2.7.11
boost/1.58.0 stable gcc/6.3.0 b:Python/2.7.12
boost/1.61.0 stable gcc/4.8.5 b:Python/2.7.11
boost/1.61.0 stable gcc/6.2.0 b:Python/2.7.11
boost/1.62.0 stable gcc/4.8.5 Python/2.7.12
boost/1.62.0 stable gcc/4.9.4 Python/2.7.12
boost/1.62.0 stable gcc/5.4.0 Python/2.7.12
boost/1.62.0 stable gcc/6.2.0 Python/2.7.12
boost/1.62.0 stable gcc/6.3.0 Python/2.7.12
boost/1.62.0 stable gcc/7.1.0 Python/2.7.12
boost/1.63.0 stable gcc/6.3.0 Python/2.7.12
boost/1.64.0 stable gcc/5.4.0 Python/2.7.12
boost/1.66.0 stable gcc/5.5.0 b:Python/2.7.12
boost/1.66.0 stable gcc/6.4.0 b:Python/2.7.12
boost/1.66.0 stable gcc/7.3.0 b:Python/2.7.12
boost/1.66.0 stable clang-macos/9.0.0 b:Python/2.7.12
boost/1.66.0 stable intel/17.4 b:Python/2.7.12
boost/1.67.0 stable gcc/5.5.0 b:Python/2.7.14
boost/1.67.0 stable gcc/6.4.0 b:Python/2.7.14
boost/1.67.0 stable gcc/7.3.0 b:Python/2.7.14
boost/1.67.0 stable clang-macos/9.0.0 b:Python/2.7.14
boost/1.67.0 stable intel/17.4 b:Python/2.7.14
boost/1.68.0 stable gcc/7.3.0 b:Python/2.7.14
boost/1.68.0 stable gcc/8.2.0 b:Python/2.7.14

25
Compiler/boost/files/variants.rhel6 Normal file
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@@ -0,0 +1,25 @@
boost/1.55.0 deprecated gcc/{4.7.4,4.8.3,4.8.4,4.9.2} b:Python/3.4.0
boost/1.55.0 deprecated gcc/4.8.5 b:Python/2.7.11
boost/1.57.0 deprecated gcc/4.8.2 b:Python/3.4.0
boost/1.58.0 deprecated gcc/4.8.4 b:Python/3.4.0
boost/1.58.0 deprecated gcc/{4.8.5,4.9.3} b:Python/2.7.11
boost/1.61.0 deprecated gcc/{4.8.5,6.2.0} b:Python/2.7.11
boost/1.62.0 deprecated gcc/{4.8.5,4.9.4,5.4.0,6.2.0,6.3.0,7.1.0} Python/2.7.12
boost/1.63.0 deprecated gcc/6.3.0 Python/2.7.12
boost/1.64.0 deprecated gcc/5.4.0 Python/2.7.12
boost/1.66.0 stable gcc/{5.5.0,6.4.0,7.3.0} b:Python/2.7.14
boost/1.66.0 stable intel/17.4 b:Python/2.7.12
boost/1.67.0 stable gcc/{5.5.0,6.4.0,7.3.0} b:Python/2.7.14
boost/1.67.0 stable intel/17.4 b:Python/2.7.14
boost/1.68.0 stable gcc/{7.3.0,8.2.0} b:Python/2.7.14
boost/1.73.0 unstable gcc/{7.5.0,8.4.0,9.3.0,10.1.0} b:zlib/1.2.11

1
Compiler/gsl/files/variants.rhel6
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@@ -13,3 +13,4 @@ gsl/2.5 stable gcc/{6.3.0,7.3.0,7.4.0,8.3.0,9.1.0}
gsl/2.5 stable intel/19.4
gsl/2.6 stable gcc/{7.4.0,8.3.0,9.1.0,9.2.0}
gsl/2.6 stable gcc/{7.5.0,8.4.0,9.3.0,10.1.0}

1
Compiler/gtest/files/variants.rhel6
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@@ -1,2 +1,3 @@
gtest/1.7.0 stable gcc/{5.4.0,6.4.0,7.3.0,7.4.0} b:cmake/3.10.3
gtest/1.8.1 stable gcc/{5.5.0,6.4.0,7.4.0,8.3.0,9.2.0} b:cmake/3.10.3
gtest/1.10.0 unstable gcc/{7.5.0,8.4.0,9.3.0,10.1.0} b:cmake/3.15.5

17
Compiler/lapack/build Executable file
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@@ -0,0 +1,17 @@
#!/usr/bin/env modbuild
pbuild::set_download_url "https://github.com/Reference-LAPACK/$P/archive/v${V_PKG}.tar.gz"
pbuild::add_configure_args '-DCBLAS=ON'
pbuild::add_configure_args '-DLAPACKE=ON'
pbuild::add_to_group 'Compiler'
pbuild::install_docfiles \
'README.md' \
'LICENSE'
# Local Variables:
# mode: sh
# sh-basic-offset: 8
# tab-width: 8
# End:

1
Compiler/lapack/files/variants.rhel6 Normal file
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@@ -0,0 +1 @@
lapack/3.9.0 unstable gcc/{7.5.0,8.4.0,9.3.0,10.1.0} b:cmake/3.15.5

21
Compiler/lapack/modulefile Normal file
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@@ -0,0 +1,21 @@
#%Module1.0
module-whatis "Linear Algebra PACKage"
module-url "http://www.netlib.org/lapack/"
module-license "See $PREFIX/share/doc/openmpi/LICENSE"
module-maintainer "Achim Gsell <achim.gsell@psi.ch>"
module-help "
LAPACK is written in Fortran 90 and provides routines for solving
systems of simultaneous linear equations, least-squares solutions
of linear systems of equations, eigenvalue problems, and singular
value problems. The associated matrix factorizations (LU, Cholesky,i
QR, SVD, Schur, generalized Schur) are also provided, as are related
computations such as reordering of the Schur factorizations and
estimating condition numbers. Dense and banded matrices are handled,
but not general sparse matrices. In all areas, similar functionality
is provided for real and complex matrices, in both single and double
precision.
This modules also includes the C-bindings in the library liblapack.a
and the BLAS library libcblas.a.
"

12
Compiler/mpich/files/variants
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@@ -1,12 +0,0 @@
mpich/3.2.1 stable gcc/4.8.5
mpich/3.2.1 stable gcc/5.5.0
mpich/3.2.1 stable gcc/6.4.0
mpich/3.2.1 stable gcc/7.3.0
mpich/3.2.1 stable gcc/8.2.0
mpich/3.2.1_merlin unstable gcc/6.4.0 b:binutils/2.29 b:mxm/3.6.3104
mpich/3.2.1_merlin unstable gcc/7.3.0 b:binutils/2.29 b:mxm/3.6.3104
mpich/3.2.1 stable intel/17.4
mpich/3.3 stable gcc/7.3.0
mpich/3.3 stable gcc/7.4.0
mpich/3.3 stable gcc/8.3.0

1
Compiler/mpich/files/variants.merlin Normal file
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@@ -0,0 +1 @@
mpich/3.2.1_merlin unstable gcc/{6.4.0,7.3.0} b:binutils/2.29 b:mxm/3.6.3104

8
Compiler/mpich/files/variants.rhel6 Normal file
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@@ -0,0 +1,8 @@
mpich/3.1.4 deprecated gcc/{4.7.4,4.8.4,4.9.2,5.1.0}
mpich/3.1.4 deprecated intel/15.2
mpich/3.2.1 stable gcc/{4.8.5,5.5.0,6.4.0,7.3.0,8.2.0}
mpich/3.2.1 stable intel/17.4
mpich/3.3 stable gcc/{7.3.0,7.4.0,8.3.0}
mpich/3.3.2 unstable gcc/{7.5.0,8.4.0,9.3.0}

1
Compiler/openmpi/files/variants.rhel6
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@@ -38,6 +38,7 @@ openmpi/3.1.2 stable gcc/{7.3.0,8.2.0}
openmpi/3.1.2 stable intel/18.4
openmpi/3.1.3 stable gcc/{4.8.5,5.5.0,6.4.0,6.5.0,7.3.0,8.2.0,8.3.0}
openmpi/3.1.4 stable gcc/{7.4.0,8.3.0,9.1.0,9.2.0}
openmpi/3.1.6 stable gcc/{7.5.0,8.4.0,9.3.0,10.1.0}
openmpi/4.0.0 stable gcc/{5.5,6.4,6.5,7.3,7.4,8.2,8.3}.0

10
Compiler/vtk/5/variants.Linux
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@@ -1,10 +0,0 @@
vtk/5.10.1 stable b:cmake/2.8.12.2 gcc/4.7.4
vtk/5.10.1 stable b:cmake/2.8.12.2 gcc/4.8.3
vtk/5.10.1 stable b:cmake/3.1.3 gcc/4.8.4
vtk/5.10.1 stable b:cmake/3.4.1 gcc/4.8.5
vtk/5.10.1 stable b:cmake/3.1.3 gcc/4.9.2
vtk/5.10.1 stable b:cmake/3.6.3 gcc/4.9.4
vtk/5.10.1 stable b:cmake/3.6.3 gcc/5.3.0
vtk/5.10.1 stable b:cmake/3.6.3 gcc/6.2.0
vtk/5.10.1 unstable b:cmake/3.1.3 intel/15.3

1
Compiler/vtk/6/variants.Linux
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@@ -1 +0,0 @@
vtk/6.3.0 unstable b:cmake/3.6.3 gcc/6.2.0

1
Compiler/vtk/7/variants.Linux
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@@ -1 +0,0 @@
vtk/7.0.0 unstable b:cmake/3.6.3 gcc/6.2.0

1
Compiler/vtk/8/variants.Linux
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@@ -1 +0,0 @@
vtk/8.0.0 unstable b:cmake/3.6.3 gcc/5.4.0

11
Compiler/vtk/files/variants.rhel6 Normal file
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@@ -0,0 +1,11 @@
vtk/5.10.1 deprecated b:cmake/2.8.12.2 gcc/{4.7.4,4.8.3}
vtk/5.10.1 deprecated b:cmake/3.1.3 gcc/{4.8.4,4.9.2}
vtk/5.10.1 deprecated b:cmake/3.1.3 intel/15.3
vtk/5.10.1 deprecated b:cmake/3.6.3 gcc/{4.8.5,4.9.4,5.3.0}
vtk/7.0.0 deprecated b:cmake/3.6.3 gcc/6.2.0
vtk/8.0.0 deprecated b:cmake/3.6.3 gcc/5.4.0
vtk/8.2.0 unstable b:cmake/3.15.5 gcc/{7.5.0,8.4.0,9.3.0}