major reorganization; updates to versions; fixes

config/versions.conf

@@ -1,7 +1,7 @@
 autoconf	2.69
 automake	1.14
 bash		4.3.30
-boost		1.55.0
+boost		1.57.0
 BoxLib		2014-02-28
 cmake		2.8.12.2
 dialog		1.2.1
@@ -17,8 +17,8 @@ fsstress	1.0.0
 h5hut_serial	1.99.13
 H5hut		1.99.13
 H5root		1.2.0
-hdf5_serial	1.8.12
-hdf5		1.8.12
+hdf5_serial	1.8.14
+hdf5		1.8.14
 ippl		1.1.3
 libtool		2.4.2
 libungif	4.1.4
@@ -36,11 +36,11 @@ OpenBLAS_OMP	0.2.9
 parmetis	3.2.0
 patchelf	0.8.1
 Python		3.4.0
-root		5.34.19
+root		5.34.26
 SuperLU		4.3
 SuperLU_DIST	3.3
 Tcl		8.6.3
 tiff		4.0.3
-trilinos	11.10.2
+trilinos	11.12.1
 UMFPACK		5.6.2
 vtk		5.10.1