add topaz merlin7

This commit is contained in:
2024-12-16 15:20:00 +01:00
parent f7fd7dd3c0
commit 51547afd76
5 changed files with 116 additions and 0 deletions
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#%Module
module-whatis "A pipeline for particle detection in cryo-electron microscopy images using convolutional neural networks trained from positive and unlabeled examples. Topaz also includes methods for micrograph and tomogram denoising using deep denoising models."
module-url "https://github.com/tbepler/topaz"
module-license "https://github.com/tbepler/topaz/blob/master/LICENSE"
module-maintainer "Greta Assmann <greta.assmann@psi.ch>"
module-help "Particle Picker for CryoEM. Used with Cryosparc"
# Check for supported shell types
set shelltype [module-info shelltype]
switch -- $shelltype {
"sh" {
puts stdout "conda(){ :; };"
puts stdout "set +u"
puts stdout "source \"${PREFIX}\"/miniconda/etc/profile.d/conda.sh;\n"
}
default {
puts stderr "Shells of type '$shelltype' are NOT supported!"
}
}
switch [module-info mode] {
"load" {
# Relies on the anaconda module being loaded since we need to update the path
puts stdout "conda activate ${P}_${V};\n"
}
"unload" -
"remove" {
puts stdout "conda deactivate;\n"
}
}