add napari module

EM/napari/README.md

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+# napari-boxmanager
+
+The napari module is built in combination with the crYOLO module : 
+
+From crYOLO/1.9.9 crYOLO exists as two different conda envs, one crYOLO (code itself) env, one napari (visualization) env. 
+The installation notes recommend to link one into another, on Merlin7 simply two different modules and envs exist.
+Users need to load one env in one terminal ( crYOLO itself) and another for visualization (napari).
+
+## Adding New Versions
+
+Adding new versions: change the environment file in the build folder accordingly (and the config.yaml file)  and run the build script. 
+

EM/napari/build

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+#!/usr/bin/env modbuild
+
+
+pbuild::configure() {
+    #MINICONDA INSTALL
+    mkdir -p  "$PREFIX/miniconda"
+    wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh -O "$PREFIX/miniconda/miniconda.sh"
+    bash "$PREFIX/miniconda/miniconda.sh" -b -u -p "$PREFIX/miniconda/"
+
+ 
+    #CREATE ENV , make sure to source the "correct" conda.sh
+    "$PREFIX/miniconda/condabin/conda" env create --name "${P}_${V}" -f "$BUILDBLOCK_DIR/environment.yaml"
+
+}
+
+#DO NOTHING
+pbuild::compile(){
+    :
+}
+
+pbuild::install(){
+    :
+}
+
+
+
+

EM/napari/environment.yaml

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+channels:
+  - conda-forge
+  - anaconda
+dependencies:
+  - python=3.10
+  - pyqt
+  - napari=0.4.17
+  - pip
+  - pip:
+    - napari-boxmanager
+

EM/napari/files/config.yaml

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+---
+format: 1
+napari:
+  defaults:
+    group: EM
+    overlay: base
+    relstage: unstable
+  versions:
+    0.4.17:
+      variants:
+        - overlay: Alps 
+          systems: [.*.merlin7.psi.ch]
+          relstage: unstable

EM/napari/modulefile

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+#%Module
+
+module-whatis	        "Particle selection tool for cryo-em (crYOLO) "
+module-url		"https://cryolo.readthedocs.io/en/stable/installation.html#install-napari-and-the-boxmanager-plugin"
+module-license	        "SPHIRE-crYOLO Complimentary Science Software License (http://sphire.mpg.de/wiki/doku.php?id=cryolo_license). Non-commercial academic and research purposes only"
+module-maintainer	"Greta Assmann  <greta.assmann@psi.ch>"
+
+module-help	"Napari-Boxmanager is a tool to use in combination with crYOLO (visualization for particle picking) "
+
+# Check for supported shell types
+set shelltype [module-info shelltype]
+switch -- $shelltype {
+    "sh" {
+        puts stdout "conda(){ :; };"
+        puts stdout "set +u"
+        puts stdout "source \"${PREFIX}\"/miniconda/etc/profile.d/conda.sh;\n"
+    }
+    default {
+        puts stderr "Shells of type '$shelltype' are NOT supported!"
+    }
+}
+
+
+switch [module-info mode] {
+    "load" {
+      # Relies on the anaconda module being loaded since we need to update the path
+      puts stdout "conda activate ${P}_${V};\n"
+    }
+    "unload" -
+    "remove" {
+        puts stdout "conda deactivate;\n"
+    }
+}
+