add adxv, imagemagick, and pymol-open-source

ImageMagick/README.md

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+# ImageMagick
+
+ImageMagick 7 image manipulation toolkit: `magick`, `convert`,
+`identify`, `mogrify`, `montage`, ... plus the MagickCore / MagickWand /
+Magick++ libraries.
+
+- Upstream: https://imagemagick.org/ (source: https://github.com/ImageMagick/ImageMagick)
+- License: ImageMagick License (Apache-2.0 derived)
+
+## How it is built
+
+Standard autotools from the sha-pinned GitHub tag tarball; the default
+modbuild hooks do `./configure --prefix=$PREFIX && make && make install`.
+Built with the gcc/12.3.0 module (also a runtime dep — Magick++ needs
+its libstdc++ on RHEL8). Version keys are the full upstream tag
+(`7.1.2-30`), which the download URL uses as `${V}`.
+
+Image-format delegates (PNG, JPEG, TIFF, ...) auto-enable from the
+`-devel` RPMs present on the build host. If a needed format is missing,
+install the RPM (e.g. `libpng-devel libjpeg-turbo-devel libtiff-devel`)
+and rebuild.
+
+## Building on Ra
+
+```sh
+module use unstable && module load modbuild/2.1.3
+cd ImageMagick
+modbuild build \
+    --tmpdir=/das/work/p21/p21515/.cache/Pmodules \
+    --distdir=/das/work/p21/p21515/.cache/Pmodules \
+    7.1.2-30
+module use MX unstable && module load ImageMagick/7.1.2-30
+```
+
+## Verifying the install
+
+```sh
+which magick                 # -> /opt/psi/MX/ImageMagick/7.1.2-30/bin/magick
+magick -version              # version + enabled features
+magick -list format | head   # delegates that got enabled
+magick rose: /tmp/rose.png   # end-to-end: writes a PNG (needs libpng delegate)
+```
+
+## Adding a new version
+
+Pick the tag from https://github.com/ImageMagick/ImageMagick/tags, add
+version + tarball sha256 in `files/config.yaml` (`sha256sum` the
+downloaded tag tarball), then build as above.

ImageMagick/build

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+#!/usr/bin/env modbuild
+
+# Plain autotools build: default hooks run ./configure --prefix=$PREFIX,
+# make -j, make install. Delegates (png/jpeg/tiff/...) auto-enable from
+# whatever -devel RPMs exist on the build host; `magick -list format`
+# shows what got in.
+
+pbuild::post_install() {
+    # modbuild has no errexit in hooks - without this a failed make still installs the modulefile
+    [[ -x "$PREFIX/bin/magick" ]] || std::die 42 "magick binary missing - configure/make failed above"
+}

ImageMagick/files/config.yaml

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+---
+format: 1
+ImageMagick:
+  defaults:
+    group: MX
+    overlay: base
+    relstage: unstable
+    urls:
+      # tag is the full version incl. patch release, e.g. 7.1.2-30 -> ${V}
+      - url: https://github.com/ImageMagick/ImageMagick/archive/refs/tags/${V}.tar.gz
+        name: ImageMagick-${V}.tar.gz
+        strip_dirs: 1
+  shasums:
+    ImageMagick-7.1.2-30.tar.gz: 3034a64f22398e15ee3dd1e6b1aa83d838cfc47df1bb246ae0eca9590e6ace72
+  versions:
+    7.1.2-30:
+      config:
+        relstage: unstable
+        # gcc also at runtime: Magick++ links gcc-12 libstdc++, newer than RHEL8 system one
+        build_requires: [gcc/12.3.0]
+        runtime_deps: [gcc/12.3.0]

ImageMagick/modulefile

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+#%Module1.0
+
+module-whatis       "ImageMagick - create, edit and convert bitmap images (magick, convert, ...)"
+module-url          "https://imagemagick.org/"
+module-license      "ImageMagick License (Apache-2.0 derived)"
+module-maintainer   "MX Data <jiaxin.duan@psi.ch>"
+
+module-help     "
+ImageMagick 7 command-line tools (magick, convert, mogrify, identify,
+montage, ...) plus MagickCore/MagickWand/Magick++ libraries and
+pkg-config files. Enabled image formats depend on the -devel RPMs
+present at build time: check with `magick -list format`.
+"
+
+prepend-path    PATH               $PREFIX/bin
+prepend-path    LD_LIBRARY_PATH    $PREFIX/lib
+prepend-path    PKG_CONFIG_PATH    $PREFIX/lib/pkgconfig
+prepend-path    MANPATH            $PREFIX/share/man