From 7f3cee67dafa2bd08f5731229f438f1bd63666c2 Mon Sep 17 00:00:00 2001 From: Derek Feichtinger Date: Wed, 6 Nov 2019 15:03:59 +0100 Subject: [PATCH 1/5] added jupytest plugin for jupyterhub --- .../jupyterhub-1.0.0_py36/jupyterhub_1.0.0_py36.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/Programming/anaconda/2019.07/conda-env-defs/jupyterhub-1.0.0_py36/jupyterhub_1.0.0_py36.yml b/Programming/anaconda/2019.07/conda-env-defs/jupyterhub-1.0.0_py36/jupyterhub_1.0.0_py36.yml index a889e4e..a2a77c8 100644 --- a/Programming/anaconda/2019.07/conda-env-defs/jupyterhub-1.0.0_py36/jupyterhub_1.0.0_py36.yml +++ b/Programming/anaconda/2019.07/conda-env-defs/jupyterhub-1.0.0_py36/jupyterhub_1.0.0_py36.yml @@ -9,3 +9,4 @@ dependencies: - jupyter_contrib_nbextensions - ipywidgets - pip + - jupytext From f000f498935e5408b417aec8e1100b662fa7a30b Mon Sep 17 00:00:00 2001 From: Derek Feichtinger Date: Wed, 6 Nov 2019 15:09:59 +0100 Subject: [PATCH 2/5] added plotly and graphviz to anaconda datascience environments --- .../2019.07/conda-env-defs/datascience_py36/datascience_36.yml | 2 ++ .../conda-env-defs/datascience_py37/datascience_py37.yml | 2 ++ 2 files changed, 4 insertions(+) diff --git a/Programming/anaconda/2019.07/conda-env-defs/datascience_py36/datascience_36.yml b/Programming/anaconda/2019.07/conda-env-defs/datascience_py36/datascience_36.yml index 8f9f851..74bf6e4 100644 --- a/Programming/anaconda/2019.07/conda-env-defs/datascience_py36/datascience_36.yml +++ b/Programming/anaconda/2019.07/conda-env-defs/datascience_py36/datascience_36.yml @@ -17,6 +17,8 @@ dependencies: - deap - nb_conda_kernels - ipywidgets + - plotly + - python-graphviz # Note that the dask 2.1.0 with python 3.6 led to a non-functioning configuration # (serialization errors in dask). Therefore we exclude it here. # - dask diff --git a/Programming/anaconda/2019.07/conda-env-defs/datascience_py37/datascience_py37.yml b/Programming/anaconda/2019.07/conda-env-defs/datascience_py37/datascience_py37.yml index 7eeab07..324ef2b 100644 --- a/Programming/anaconda/2019.07/conda-env-defs/datascience_py37/datascience_py37.yml +++ b/Programming/anaconda/2019.07/conda-env-defs/datascience_py37/datascience_py37.yml @@ -18,5 +18,7 @@ dependencies: - deap - nb_conda_kernels - ipywidgets + - plotly - dask - dask-jobqueue + - python-graphviz From 4810bd4c7b2694128b8d8f022f108ccd9779dd4f Mon Sep 17 00:00:00 2001 From: Derek Feichtinger Date: Wed, 6 Nov 2019 15:12:08 +0100 Subject: [PATCH 3/5] added bayesian-optimization package to anaconda datascience_p37 env on mail request by virginie.solans@psi.ch --- .../conda-env-defs/datascience_py37/datascience_py37.yml | 2 ++ 1 file changed, 2 insertions(+) diff --git a/Programming/anaconda/2019.07/conda-env-defs/datascience_py37/datascience_py37.yml b/Programming/anaconda/2019.07/conda-env-defs/datascience_py37/datascience_py37.yml index 324ef2b..cc287de 100644 --- a/Programming/anaconda/2019.07/conda-env-defs/datascience_py37/datascience_py37.yml +++ b/Programming/anaconda/2019.07/conda-env-defs/datascience_py37/datascience_py37.yml @@ -22,3 +22,5 @@ dependencies: - dask - dask-jobqueue - python-graphviz + - bayesian-optimization + From 083a95b3af7576f20833113a9dacc6cb18ced207 Mon Sep 17 00:00:00 2001 From: Derek Feichtinger Date: Wed, 6 Nov 2019 15:14:05 +0100 Subject: [PATCH 4/5] added conda-build to anaconda hpce-tools We should be able to build our own anaconda packages in a centrally provided environment. --- .../anaconda/2019.07/conda-env-defs/hpce-tools/hpce-tools.yml | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/Programming/anaconda/2019.07/conda-env-defs/hpce-tools/hpce-tools.yml b/Programming/anaconda/2019.07/conda-env-defs/hpce-tools/hpce-tools.yml index 2aca8ee..19d540e 100644 --- a/Programming/anaconda/2019.07/conda-env-defs/hpce-tools/hpce-tools.yml +++ b/Programming/anaconda/2019.07/conda-env-defs/hpce-tools/hpce-tools.yml @@ -6,4 +6,5 @@ channels: dependencies: - python=3.6 - ldapuserdir - + - cython # for pyslurm + - conda-build From 03cc1e648cd0588bb538bba093429ecda554fb88 Mon Sep 17 00:00:00 2001 From: Derek Feichtinger Date: Wed, 6 Nov 2019 15:20:12 +0100 Subject: [PATCH 5/5] adding xlrd to anaconda envs for pandas/excel compatibility --- .../2019.07/conda-env-defs/datascience_py36/datascience_36.yml | 1 + .../2019.07/conda-env-defs/datascience_py37/datascience_py37.yml | 1 + .../anaconda/2019.07/conda-env-defs/talos_py36/talos_py36.yml | 1 + .../tensorflow-1.13.1_py36/tensorflow-1.13.1_py36.yml | 1 + 4 files changed, 4 insertions(+) diff --git a/Programming/anaconda/2019.07/conda-env-defs/datascience_py36/datascience_36.yml b/Programming/anaconda/2019.07/conda-env-defs/datascience_py36/datascience_36.yml index 74bf6e4..dcb07b9 100644 --- a/Programming/anaconda/2019.07/conda-env-defs/datascience_py36/datascience_36.yml +++ b/Programming/anaconda/2019.07/conda-env-defs/datascience_py36/datascience_36.yml @@ -5,6 +5,7 @@ channels: dependencies: - python=3.6 - pandas + - xlrd - numpy - scipy - scikit-learn diff --git a/Programming/anaconda/2019.07/conda-env-defs/datascience_py37/datascience_py37.yml b/Programming/anaconda/2019.07/conda-env-defs/datascience_py37/datascience_py37.yml index cc287de..0f63606 100644 --- a/Programming/anaconda/2019.07/conda-env-defs/datascience_py37/datascience_py37.yml +++ b/Programming/anaconda/2019.07/conda-env-defs/datascience_py37/datascience_py37.yml @@ -5,6 +5,7 @@ channels: dependencies: - python=3.7 - pandas + - xlrd - numpy - scipy - scikit-learn diff --git a/Programming/anaconda/2019.07/conda-env-defs/talos_py36/talos_py36.yml b/Programming/anaconda/2019.07/conda-env-defs/talos_py36/talos_py36.yml index fffdff1..cc1464b 100644 --- a/Programming/anaconda/2019.07/conda-env-defs/talos_py36/talos_py36.yml +++ b/Programming/anaconda/2019.07/conda-env-defs/talos_py36/talos_py36.yml @@ -4,6 +4,7 @@ channels: dependencies: - python=3.6 - pandas + - xlrd - numpy - scipy - scikit-learn diff --git a/Programming/anaconda/2019.07/conda-env-defs/tensorflow-1.13.1_py36/tensorflow-1.13.1_py36.yml b/Programming/anaconda/2019.07/conda-env-defs/tensorflow-1.13.1_py36/tensorflow-1.13.1_py36.yml index 83bb851..28d9b37 100644 --- a/Programming/anaconda/2019.07/conda-env-defs/tensorflow-1.13.1_py36/tensorflow-1.13.1_py36.yml +++ b/Programming/anaconda/2019.07/conda-env-defs/tensorflow-1.13.1_py36/tensorflow-1.13.1_py36.yml @@ -5,6 +5,7 @@ channels: dependencies: - python=3.6 - pandas + - xlrd - numpy - scipy - scikit-learn