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Jungfraujoch/image_analysis/WriteReflections.h
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leonarski_fandClaude Opus 4.8 a773aaa6a9
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WriteReflections: write merging statistics + ISa to the mmCIF output
The .cif (--scaling-output cif) now carries the per-shell and overall merging
statistics in the standard _reflns / _reflns_shell categories (resolution, redundancy,
completeness, <I/sigma>, R-rim/R-meas, CC1/2) plus the Diederichs asymptotic I/sigma
(ISa) as a free-text _reflns.pdbx_diffrn_ISa item (no standard CIF tag exists). The
MergeStatistics and the ISa string are threaded through WriteReflections to the mmCIF
writer; jfjoch_process and jfjoch_scale pass them. Values match the text statistics table.

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-30 22:29:45 +02:00

35 lines
1.4 KiB
C++

// SPDX-FileCopyrightText: 2025 Paul Scherrer Institute
// SPDX-License-Identifier: GPL-3.0-only
#pragma once
#include <string>
#include <vector>
#include "../common/Reflection.h"
#include "../common/UnitCell.h"
#include "../common/DiffractionExperiment.h"
struct MergeStatistics;
void WriteMmcifReflections(const std::vector<MergedReflection> &reflections,
const UnitCell &unitCell,
const DiffractionExperiment &experiment,
const MergeStatistics &statistics,
const std::string &isa,
const std::string &filename);
void WriteMtzReflections(const std::vector<MergedReflection> &reflections,
const UnitCell &unitCell,
const DiffractionExperiment &experiment,
const std::string &filename);
void WriteHKLReflections(const std::vector<MergedReflection> &reflections,
const std::string &filename);
void WriteReflections(const std::vector<MergedReflection> &reflections,
const UnitCell &unitCell,
const DiffractionExperiment &experiment,
const MergeStatistics &statistics,
const std::string &isa,
const std::string &filename);