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Jungfraujoch/image_analysis/indexing/PostIndexingRefinement.h
leonarski_f 6133da1377
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v1.0.0-rc.133
This is an UNSTABLE release. The release has significant modifications and bug fixes, if things go wrong, it is better to revert to 1.0.0-rc.132.

* jfjoch_broker: Use httplib for HTTP server instead of Pistache
* jfjoch_broker: Drop OpenSSL support
* jfjoch_broker: Base work for multi-lattice support in the future
* Update dependencies to more recent versions (spdlog, HDF5, Catch2, httplib)

Reviewed-on: #41
2026-03-26 20:50:33 +01:00

36 lines
1.2 KiB
C++

// SPDX-FileCopyrightText: 2025 Filip Leonarski, Paul Scherrer Institute <filip.leonarski@psi.ch>
// SPDX-License-Identifier: GPL-3.0-only
#pragma once
#include <vector>
#include <optional>
#include <algorithm>
#include <cmath>
#include <cstdint>
#include <Eigen/Dense>
#include "../common/CrystalLattice.h"
constexpr float REFINE_CANDIDATE_SPOT_COUNT_RATIO_THRESHOLD = 0.9f;
constexpr float REFINE_CANDIDATE_VOLUME_RATIO_THRESHOLD = 1.05f;
constexpr float REFINE_CANDIDATE_OVERLAP_RATIO_THRESHOLD = 0.2f;
constexpr float REFINE_MIN_VOLUME_EPSILON = 1e-12f;
constexpr float REFINE_MIN_REFERENCE_LENGTH_EPSILON = 1e-6f;
struct RefineParameters {
int64_t viable_cell_min_spots;
float dist_tolerance_vs_reference;
std::optional<UnitCell> reference_unit_cell;
float min_length_A;
float max_length_A;
float min_angle_deg;
float max_angle_deg;
float indexing_tolerance;
};
std::vector<CrystalLattice> Refine(const std::vector<Coord> &in_spots,
size_t nspots,
Eigen::MatrixX3<float> &oCell,
Eigen::VectorX<float> &scores,
RefineParameters &p);