Jungfraujoch/image_analysis/MXAnalysisAfterFPGA.cpp

// SPDX-FileCopyrightText: 2024 Filip Leonarski, Paul Scherrer Institute <filip.leonarski@psi.ch>
// SPDX-License-Identifier: GPL-3.0-only

#include "MXAnalysisAfterFPGA.h"
#include "spot_finding/DetModuleSpotFinder_cpu.h"
#include "../common/CUDAWrapper.h"
#include "spot_finding/SpotUtils.h"
#include "bragg_prediction/BraggPredictionFactory.h"

double stddev(const std::vector<float> &v) {
    if (v.size() <= 1)
        return 0.0;

    double mean = 0.0f;

    for (const auto &i: v)
        mean += i;
    mean /= v.size();

    double stddev = 0.0f;
    for (const auto &i: v)
        stddev += (i - mean) * (i - mean);

    return sqrt(stddev / (v.size() - 1));
}


MXAnalysisAfterFPGA::MXAnalysisAfterFPGA(const DiffractionExperiment &in_experiment, IndexAndRefine &indexer)
    : experiment(in_experiment),
      indexer(indexer),
      prediction(CreateBraggPrediction(experiment.IsRotationIndexing())) {
    if (experiment.IsSpotFindingEnabled())
        find_spots = true;
}

void MXAnalysisAfterFPGA::ReadFromFPGA(const DeviceOutput *output, const SpotFindingSettings &settings, size_t module_number) {
    if (state == State::Disabled || !find_spots || !settings.enable) {
        state = State::Disabled;
    } else {
        StrongPixelSet strong_pixel_set;
        strong_pixel_set.ReadFPGAOutput(experiment, *output);
        strong_pixel_set.FindSpots(experiment, settings, spots, module_number);
        state = State::Enabled;
    }
}

void MXAnalysisAfterFPGA::ReadFromCPU(DeviceOutput *output, const SpotFindingSettings &settings, size_t module_number) {
    std::unique_lock ul(read_from_cpu_mutex);

    if (state == State::Disabled || !find_spots || !settings.enable) {
        state = State::Disabled;
    } else {
        state = State::Enabled;

        std::vector<float> d_map(RAW_MODULE_SIZE);

        experiment.CalcSpotFinderResolutionMap(d_map.data(), module_number);

        arr_mean.resize(RAW_MODULE_SIZE);
        arr_sttdev.resize(RAW_MODULE_SIZE);
        arr_valid_count.resize(RAW_MODULE_SIZE);
        arr_strong_pixel.resize(RAW_MODULE_SIZE);

        if (experiment.GetByteDepthImage() == 2)
            FindSpots(*output,
                      settings,
                      d_map.data(),
                      arr_mean.data(),
                      arr_sttdev.data(),
                      arr_valid_count.data(),
                      arr_strong_pixel.data());
        else if (experiment.GetByteDepthImage() == 4)
            FindSpots<int32_t>(*output,
                               settings,
                               d_map.data(),
                               arr_mean.data(),
                               arr_sttdev.data(),
                               arr_valid_count.data(),
                               arr_strong_pixel.data());
        else if (experiment.GetByteDepthImage() == 1)
            FindSpots<int8_t>(*output,
                              settings,
                              d_map.data(),
                              arr_mean.data(),
                              arr_sttdev.data(),
                              arr_valid_count.data(),
                              arr_strong_pixel.data());

        ReadFromFPGA(output, settings, module_number);
    }
}

void MXAnalysisAfterFPGA::Process(DataMessage &message, const SpotFindingSettings& spot_finding_settings) {
    if (find_spots && (state == State::Enabled)) {
        SpotAnalyze(experiment, spot_finding_settings, spots, message);

        if (spot_finding_settings.indexing)
            indexer.ProcessImage(message, spot_finding_settings, message.image, *prediction);
    }
    spots.clear();
    state = State::Idle;
}