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leonarski_fandClaude Opus 4.8 d393ec814c Remove residual sample identities missed by the earlier scrub 
The rc.160 sample-identity cleanup left protein names, internal dataset
codes, and a measured cell angle in several source comments and one test.
Most sensitive: a measured monoclinic beta tied to an internal code in
Rugnux.cpp and IndexAndRefine.cpp. Rewrite each to describe the
crystallographic situation only (space group / metric relation), keeping
the technical reasoning intact. Comment- and string-only; no behaviour
change. (rugnux_cli.cpp's remaining name is scrubbed in the following
commit, alongside its other change to that file.)

Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
2026-07-15 22:18:32 +02:00
..
crystfel
Remove sample identities from the repository; document the rule
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data
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test_data
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xds
v1.0.0-rc.134 (#43)
2026-04-09 13:30:47 +02:00
xds_durin
version 1.0.0-rc.13
2024-10-05 13:14:49 +02:00
xds_neggia
version 1.0.0-rc.13
2024-10-05 13:14:49 +02:00
AcquisitionCountersTest.cpp
v1.0.0-rc.36
2025-05-05 19:32:22 +02:00
AutoIncrVectorTest.cpp
v1.0.0-rc.139 (#49)
2026-04-29 09:50:50 +02:00
AzimuthalIntegrationTest.cpp
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
BraggIntegrationEngineCompressedImageTest.cpp
v1.0.0-rc.156 (#66)
2026-07-03 19:18:56 +02:00
BraggIntegrationEngineGPUTest.cpp
v1.0.0-rc.156 (#66)
2026-07-03 19:18:56 +02:00
CalcBraggPredictionTest.cpp
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
CBORTest.cpp
Remove sample identities from the repository; document the rule
2026-07-15 17:19:43 +02:00
CCTest.cpp
v1.0.0-rc.146 (#56)
2026-05-28 18:48:35 +02:00
CheckImageOutput.h
v1.0.0-rc.36
2025-05-05 19:32:22 +02:00
CMakeLists.txt
v1.0.0-rc.159 (#69)
2026-07-13 13:54:03 +02:00
CoordTest.cpp
v1.0.0-rc.41
2025-06-10 18:14:04 +02:00
CrystalLatticeTest.cpp
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
DetectorGeometryTest.cpp
v1.0.0-rc.103 (#8)
2025-11-19 09:40:50 +01:00
DetectorSettingsTest.cpp
v1.0.0-rc.139 (#49)
2026-04-29 09:50:50 +02:00
DetectorSetupTest.cpp
v1.0.0-rc.143 (#53)
2026-04-30 22:16:50 +02:00
DetGeomCalibTest.cpp
v1.0.0-rc.96 (#1)
2025-11-02 13:45:57 +01:00
DiffractionExperimentTest.cpp
Remove sample identities from the repository; document the rule
2026-07-15 17:19:43 +02:00
DiffractionGeometryTest.cpp
v1.0.0-rc.158 (#68)
2026-07-12 19:42:29 +02:00
DiffractionSpotTest.cpp
v1.0.0-rc.36
2025-05-05 19:32:22 +02:00
enospc_shim.c
SHIM library improvements from the HDF Group
2026-05-08 11:39:51 +02:00
FPGAFrameGeneratorTest.cpp
version 1.0.0-rc.25
2024-11-22 21:25:20 +01:00
FPGAHLSModulesTest.cpp
v1.0.0-rc.91
2025-10-20 20:43:44 +02:00
FPGAHostWriterTest.cpp
v1.0.0-rc.34
2025-04-14 11:52:06 +02:00
FPGAIntegrationTest.cpp
v1.0.0-rc.97
2025-11-09 12:42:27 +01:00
FPGANetworkTest.cpp
v1.0.0-rc.72
2025-09-08 20:28:59 +02:00
FPGAPTPTest.cpp
v1.0.0-rc.72
2025-09-08 20:28:59 +02:00
FPGASpotFindingUnitTest.cpp
v.1.0.0-rc.32
2025-03-24 12:16:33 +01:00
FrameTransformationTest.cpp
v1.0.0-rc.156 (#66)
2026-07-03 19:18:56 +02:00
FrenchWilsonTest.cpp
v1.0.0-rc.159 (#69)
2026-07-13 13:54:03 +02:00
GoniometerAxisTest.cpp
v1.0.0-rc49
2025-06-18 15:19:18 +02:00
GridScanSettingsTest.cpp
v1.0.0-rc.104 (#9)
2025-11-19 17:28:10 +01:00
HDF5WritingTest.cpp
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2026-07-15 17:19:43 +02:00
HistogramTest.cpp
v1.0.0-rc.121 (#28)
2025-12-12 21:24:20 +01:00
HKLKeyTest.cpp
v1.0.0-rc.124 (#31)
2026-02-01 13:29:33 +01:00
ImageBufferTest.cpp
v1.0.0-rc.128 (#35)
2026-03-03 22:24:44 +01:00
ImageMetadataTest.cpp
v1.0.0-rc.103 (#8)
2025-11-19 09:40:50 +01:00
ImageSpotFinderCPUTest.cpp
v1.0.0-rc.137 (#46)
2026-04-25 19:59:21 +02:00
ImageSpotFinderGPUTest.cpp
v1.0.0-rc.137 (#46)
2026-04-25 19:59:21 +02:00
IndexingUnitTest.cpp
Remove sample identities from the repository; document the rule
2026-07-15 17:19:43 +02:00
JFCalibrationTest.cpp
v1.0.0-rc.36
2025-05-05 19:32:22 +02:00
JFConversionTest.cpp
version 1.0.0-rc.25
2024-11-22 21:25:20 +01:00
jfjoch_hdf5_enospc_test.cpp
SHIM library improvements from the HDF Group
2026-05-08 11:39:51 +02:00
JFJochReaderTest.cpp
Remove sample identities from the repository; document the rule
2026-07-15 17:19:43 +02:00
JFJochReceiverIntegrationTest.cpp
v1.0.0-rc.150 (#60)
2026-06-15 20:24:15 +02:00
JFJochReceiverLiteTest.cpp
Remove sample identities from the repository; document the rule
2026-07-15 17:19:43 +02:00
JFJochReceiverPlotsTest.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
JFJochReceiverProcessingTest.cpp
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2026-07-15 17:19:43 +02:00
JFJochStateMachineTest.cpp
v1.0.0-rc.139 (#49)
2026-04-29 09:50:50 +02:00
JFPedestalTest.cpp
version 1.0.0-rc.25
2024-11-22 21:25:20 +01:00
JPEGTest.cpp
v1.0.0-rc.40
2025-05-28 18:49:27 +02:00
LatticeReductionTest.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
LatticeSearchTest.cpp
v1.0.0-rc.91
2025-10-20 20:43:44 +02:00
LoadReferenceMtzFreeFlagsTest.cpp
v1.0.0-rc.159 (#69)
2026-07-13 13:54:03 +02:00
LossyFilterTest.cpp
version 1.0.0-rc.25
2024-11-22 21:25:20 +01:00
MergeScaleTest.cpp
v1.0.0-rc.146 (#56)
2026-05-28 18:48:35 +02:00
ModuleSummationTest.cpp
version 1.0.0-rc.27 minor fixes
2024-12-04 20:58:51 +01:00
MovingAverageTest.cpp
v1.0.0-rc.31
2025-03-02 13:15:28 +01:00
MultiLatticeSearchTest.cpp
v1.0.0-rc.148 (#58)
2026-06-08 08:30:35 +02:00
PedestalCalcTest.cpp
v1.0.0-rc.97
2025-11-09 12:42:27 +01:00
PixelMaskTest.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
PreviewCounterTest.cpp
version 1.0.0-rc.25
2024-11-22 21:25:20 +01:00
RawToConvertedGeometryTest.cpp
v1.0.0-rc.97
2025-11-09 12:42:27 +01:00
RegressionTest.cpp
1.0.0-rc.89
2025-10-01 22:54:40 +02:00
ReindexAmbiguityTest.cpp
v1.0.0-rc.159 (#69)
2026-07-13 13:54:03 +02:00
ResolutionShellsTest.cpp
v1.0.0-rc.91
2025-10-20 20:43:44 +02:00
RfreeFlagsTest.cpp
v1.0.0-rc.159 (#69)
2026-07-13 13:54:03 +02:00
ROIIntegrationCPUTest.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROIIntegrationGPUTest.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ROIMapTest.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
RotationIndexerTest.cpp
v1.0.0-rc.147 (#57)
2026-06-02 11:49:24 +02:00
RugnuxLargeTest.cpp
Remove sample identities from the repository; document the rule
2026-07-15 17:19:43 +02:00
RugnuxTest.cpp
Remove sample identities from the repository; document the rule
2026-07-15 17:19:43 +02:00
SearchSpaceGroupTest.cpp
Remove residual sample identities missed by the earlier scrub
2026-07-15 22:18:32 +02:00
SpotUtilsTest.cpp
v1.0.0-rc.91
2025-10-20 20:43:44 +02:00
StatusVectorTest.cpp
v1.0.0-rc.127 (#34)
2026-03-02 15:57:12 +01:00
StreamWriterTest.cpp
v1.0.0-rc.97
2025-11-09 12:42:27 +01:00
StrongPixelSetTest.cpp
v1.0.0-rc.97
2025-11-09 12:42:27 +01:00
TCPImagePusherTest.cpp
v1.0.0-rc.157 (#67)
2026-07-11 07:19:11 +02:00
TestData.h
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ThreadSafeFIFOSetTest.cpp
v1.0.0-rc.135 (#44)
2026-04-16 11:59:59 +02:00
TIFFTest.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
TimeTest.cpp
v1.0.0-rc.96 (#1)
2025-11-02 13:45:57 +01:00
TopPixelsTest.cpp
v1.0.0-rc.121 (#28)
2025-12-12 21:24:20 +01:00
UnitCellTest.cpp
v1.0.0-rc.146 (#56)
2026-05-28 18:48:35 +02:00
XDSPluginTest.cpp
v1.0.0-rc.134 (#43)
2026-04-09 13:30:47 +02:00
XtalOptimizerTest.cpp
v1.0.0-rc.153 (#63)
2026-06-23 20:29:49 +02:00
ZMQImagePusherTest.cpp
v1.0.0-rc.129 (#36)
2026-03-05 22:13:12 +01:00
ZMQMetadataSocketTest.cpp
v1.0.0-rc.133
2026-03-26 20:50:33 +01:00
ZMQPreviewSocketTest.cpp
version 1.0.0-rc.25
2024-11-22 21:25:20 +01:00
ZSTDCompressorTest.cpp
Remove sample identities from the repository; document the rule
2026-07-15 17:19:43 +02:00