leonarski_fandClaude Opus 4.8
100fe7b7e7
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PixelRefine is now an intensity-only operation: geometry is fixed (refined upstream by XtalOptimizer) and the only objective is the factored per-reflection likelihood (FACTORED_MODEL.md Terms 1+2) - measured per-resolution profile width R1 plus one Fisher-weighted intensity/scaling residual per reflection, fitting the per-image scale G and B. Validated on crystal 2 (fixed_master.h5 as stills, 1.7 A): CC1/2 84-92%, CCref 77-92%, flat - reproduces the env-flag prototype and matches the rotation path from the stills path. Removed: - the per-pixel ShoeboxResidual loss and PixelResidual cost functor; - all in-PixelRefine geometry refinement (orientation/cell/beam/distance/R), the regularised-orientation LSQ, signal-weighting, and the global sweep; - Term 3 (per-spot recentring) - a confirmed no-op on both crystals; - the diagnostic scaffolding (covariance, centroid, adaptive_R1) and the PR_* env knobs + stderr dumps in IndexAndRefine; - the PredictImage/ChiSquaredImage renderers and the entire viewer PixelRefine window/table/params + worker bindings + shoebox overlay. The sweep box-integrator background median became mean (consistency) by virtue of removing the sweep. METHODS.md rewritten for the current model; findings recorded in FINDINGS-2026-06.md. Net -2200 lines. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
34 lines
810 B
C++
34 lines
810 B
C++
// SPDX-FileCopyrightText: 2025 Filip Leonarski, Paul Scherrer Institute <filip.leonarski@psi.ch>
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// SPDX-License-Identifier: GPL-3.0-only
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#pragma once
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#include "JFJochImage.h"
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#include <QVector>
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#include <QColor>
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#include <QPointF>
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#include <QRect>
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#include <QGraphicsTextItem>
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#include <vector>
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#include <QTimer>
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#include "../SimpleImage.h"
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#include "../../common/ColorScale.h"
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class JFJochSimpleImage : public JFJochImage {
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Q_OBJECT
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std::shared_ptr<const SimpleImage> image_;
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// Prepare image
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template<class T>
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void loadImageInternal(const uint8_t *input);
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void loadImageInternal();
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void mouseHover(QMouseEvent *event) override;
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public:
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explicit JFJochSimpleImage(QWidget *parent = nullptr);
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public slots:
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void setImage(std::shared_ptr<const SimpleImage> img);
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};
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