leonarski_f
a433399106
Add three entry points so ROI statistics can be (re)computed without a full re-analysis, in support of interactive ROI editing in the viewer: - RebuildROI(): recreate the ROI engine after the ROI set changes (the CudaStream is now kept as a member so the GPU engine can be rebuilt). - AnalyzeROIOnly(): decompress + preprocess + ROI, skipping azimuthal integration, spot finding and indexing (a new image when re-analysis is off). - RunROIOnly(): rerun only the ROI integration on the already-preprocessed image (an interactive ROI move). A full Analyze() still computes ROIs. Co-Authored-By: Claude Opus 4.8 <noreply@anthropic.com>
67 lines
2.4 KiB
C++
67 lines
2.4 KiB
C++
// SPDX-FileCopyrightText: 2024 Filip Leonarski, Paul Scherrer Institute <filip.leonarski@psi.ch>
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// SPDX-License-Identifier: GPL-3.0-only
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#pragma once
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#include <mutex>
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#include "../common/JFJochMessages.h"
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#include "../common/DiffractionExperiment.h"
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#include "../common/AzimuthalIntegrationMapping.h"
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#include "../common/PixelMask.h"
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#include "../common/AzimuthalIntegrationProfile.h"
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#include "bragg_prediction/BraggPrediction.h"
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#include "spot_finding/ImageSpotFinder.h"
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#include "indexing/IndexerThreadPool.h"
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#include "azint/AzIntEngine.h"
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#include "roi/ROIIntegration.h"
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#include "IndexAndRefine.h"
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#include "image_preprocessing/ImagePreprocessor.h"
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#include "image_preprocessing/ImagePreprocessorBuffer.h"
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class CudaStream;
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// MXAnalysisWithoutFPGA is not thread safe - it has to owned by a single thread
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class MXAnalysisWithoutFPGA {
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const DiffractionExperiment &experiment;
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const AzimuthalIntegrationMapping &integration;
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std::vector<uint8_t> decompression_buffer;
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std::unique_ptr<ImagePreprocessor> preprocessor;
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size_t npixels;
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size_t xpixels;
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std::unique_ptr<AzIntEngine> azint;
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std::unique_ptr<ROIIntegration> roi;
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std::unique_ptr<ImageSpotFinder> spotFinder;
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IndexAndRefine &indexer;
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std::unique_ptr<BraggPrediction> prediction;
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std::unique_ptr<ImagePreprocessorBuffer> preprocessor_buffer;
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const PixelMask &mask;
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std::vector<bool> mask_resolution;
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float mask_high_res;
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float mask_low_res;
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void UpdateMaskResolution(const SpotFindingSettings& settings);
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#ifdef JFJOCH_USE_CUDA
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std::shared_ptr<CudaStream> stream; // kept so RebuildROI() can recreate the GPU ROI engine
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#endif
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public:
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MXAnalysisWithoutFPGA(const DiffractionExperiment &experiment, const AzimuthalIntegrationMapping &integration,
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const PixelMask &mask, IndexAndRefine &indexer);
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void Analyze(DataMessage &output, AzimuthalIntegrationProfile &profile, const SpotFindingSettings &spot_finding_settings);
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// Surgical ROI-only paths used when a full re-analysis is not wanted: rebuild the
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// ROI engine after the ROI set changes, recompute ROIs after preprocessing a new
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// image (reanalyze off), or just rerun ROIs on the current preprocessed image (an
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// interactive ROI move). A full Analyze() already computes ROIs, so needs nothing.
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void RebuildROI();
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void AnalyzeROIOnly(DataMessage &output);
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void RunROIOnly(DataMessage &output);
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};
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